View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_5 (Length: 644)
Name: NF3114_low_5
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 405 - 626
Target Start/End: Original strand, 675152 - 675373
Alignment:
| Q |
405 |
aaaatcaatcttttcaacaaccctttgagtttctctcactaaaaatccaatcttttcacaaatttctcaaaccccattttgattctctttgattctgata |
504 |
Q |
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| T |
675152 |
aaaatcaatcttttcaacaaccctttgagtttctctcactaaaaatccaatcttttcacaaatttctcaaaccccattttgattctctttgattctgata |
675251 |
T |
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| Q |
505 |
cacccacaagaaaaagattcaatttttatcacaaatttacttggataaaaaatgggtttttcgaagaattcgaagaaaacacaaatagagaagagtttgg |
604 |
Q |
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| T |
675252 |
cacccacaagaaaaagattcaatttttatcacaaatttacttggataaaaaatgggtttttcgaagaattcgaagaaaacacaaatagagaagagtttgg |
675351 |
T |
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| Q |
605 |
aatctgaagctaagaaatgggt |
626 |
Q |
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| T |
675352 |
aatctgaagctaagaaatgggt |
675373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 674744 - 674928
Alignment:
| Q |
10 |
gcacagactctgtcatcatcattatttcattcaataatctnnnnnnntccaaggataaaatcgtaattcttcatctcaaaattcatagagcgggagttag |
109 |
Q |
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| T |
674744 |
gcacagactctgtcatcatcattatttcattcaataatataaaaaaatccaaggttaaaatcgtaattcttcatctcaaaattcatagagcgggaattag |
674843 |
T |
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| Q |
110 |
agccgttgcttctcaattcaatgaaattttcgcgccaaattttcatttcccacttgccctgcccgtaaattctcggtcagcccct |
194 |
Q |
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| T |
674844 |
agccgttgcttctcaattcaatgaaattttcgcgccaaattttcatttcccacttgccctgcccgtaaattctcggtcagaccct |
674928 |
T |
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