View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_low_51 (Length: 321)

Name: NF3114_low_51
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_low_51
NF3114_low_51
[»] chr4 (13 HSPs)
chr4 (18-321)||(51904408-51904711)
chr4 (227-321)||(5994869-5994963)
chr4 (227-321)||(16318883-16318975)
chr4 (109-164)||(32091500-32091555)
chr4 (234-321)||(37586474-37586561)
chr4 (227-296)||(8109065-8109134)
chr4 (228-321)||(51339967-51340059)
chr4 (227-321)||(27654562-27654656)
chr4 (109-161)||(22882842-22882894)
chr4 (109-161)||(22934506-22934558)
chr4 (259-305)||(39401946-39401992)
chr4 (93-164)||(24969134-24969204)
chr4 (227-296)||(39471266-39471335)
[»] chr5 (4 HSPs)
chr5 (233-321)||(41034437-41034525)
chr5 (234-321)||(25002014-25002101)
chr5 (118-164)||(316784-316830)
chr5 (239-305)||(36325538-36325604)
[»] chr1 (7 HSPs)
chr1 (232-304)||(46792979-46793051)
chr1 (234-321)||(18473734-18473821)
chr1 (274-321)||(11247855-11247902)
chr1 (227-321)||(28274871-28274965)
chr1 (227-305)||(18953166-18953244)
chr1 (227-288)||(30678913-30678974)
chr1 (227-288)||(39974202-39974263)
[»] chr2 (16 HSPs)
chr2 (227-321)||(6420456-6420548)
chr2 (227-321)||(19193504-19193598)
chr2 (227-321)||(18949196-18949290)
chr2 (259-321)||(4024774-4024836)
chr2 (227-321)||(31494291-31494385)
chr2 (227-321)||(19953480-19953574)
chr2 (227-296)||(12989300-12989369)
chr2 (227-292)||(20459017-20459082)
chr2 (109-170)||(42261577-42261638)
chr2 (232-296)||(45554668-45554732)
chr2 (78-164)||(28523085-28523169)
chr2 (109-164)||(41454256-41454311)
chr2 (227-321)||(43400218-43400312)
chr2 (227-301)||(44152336-44152409)
chr2 (227-296)||(30706379-30706448)
chr2 (234-294)||(35523456-35523516)
[»] chr7 (14 HSPs)
chr7 (227-305)||(20954780-20954858)
chr7 (229-311)||(46994366-46994448)
chr7 (233-321)||(2911846-2911934)
chr7 (227-320)||(35549651-35549744)
chr7 (259-321)||(24845463-24845525)
chr7 (226-296)||(38065327-38065397)
chr7 (259-321)||(44350240-44350302)
chr7 (227-296)||(27888391-27888460)
chr7 (93-164)||(43363548-43363620)
chr7 (229-296)||(25686839-25686906)
chr7 (109-164)||(26639342-26639397)
chr7 (227-296)||(27949382-27949451)
chr7 (93-164)||(36574592-36574663)
chr7 (234-306)||(37490002-37490074)
[»] chr3 (14 HSPs)
chr3 (227-299)||(40631197-40631269)
chr3 (227-296)||(52123958-52124027)
chr3 (238-321)||(53655419-53655502)
chr3 (227-321)||(7640596-7640690)
chr3 (227-321)||(22813273-22813367)
chr3 (227-296)||(41451897-41451966)
chr3 (229-321)||(10798280-10798372)
chr3 (227-311)||(27243140-27243224)
chr3 (227-287)||(43657870-43657930)
chr3 (227-294)||(24734816-24734883)
chr3 (109-164)||(35138797-35138852)
chr3 (259-321)||(7791913-7791975)
chr3 (227-288)||(20791413-20791474)
chr3 (234-318)||(34706590-34706674)
[»] chr8 (10 HSPs)
chr8 (234-321)||(24683656-24683743)
chr8 (227-316)||(38091440-38091529)
chr8 (78-148)||(30909406-30909474)
chr8 (231-321)||(11574036-11574126)
chr8 (274-321)||(45524924-45524971)
chr8 (227-313)||(13407325-13407411)
chr8 (227-320)||(12212126-12212219)
chr8 (227-320)||(12456554-12456647)
chr8 (227-288)||(16983511-16983572)
chr8 (120-165)||(33655407-33655452)
[»] scaffold0005 (1 HSPs)
scaffold0005 (227-321)||(296921-297015)
[»] chr6 (3 HSPs)
chr6 (227-321)||(12690337-12690431)
chr6 (234-311)||(6163527-6163604)
chr6 (227-296)||(34905445-34905514)
[»] scaffold0002 (1 HSPs)
scaffold0002 (109-170)||(490412-490473)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 51904408 - 51904711
Alignment:
Q  18 gtttacttagttctatccaacaattatctacatttgggaggagataaagctcttgaatcgactatcaaagggtcattacaaagagaaatacaaagagttg 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  51904408 gtttacttagttctatccaacaattatctacatttggggggagataaagctcttgaatctactatcaaagggtcattacaaagagagatacaaagagttg 51904507  T
Q  118 caagaaattagattcaacaaactctccaagaacatatctaatttctatgatttctcacttttttcgcttgatgatgagagtatacaaaagtgaccaagaa 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51904508 caagaaattagattcgacaaactctccaagaacatatctaatttctatgatttctcacttttttcgcttgatgatgagagtatacaaaagtgaccaagaa 51904607  T
Q  218 attagtaccgctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttc 317  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51904608 attagtattgctagcaacactctcttttcaacactctctctaacacttacattcttattggcttaaatcatggtgggtctcacactttgtaaataggttc 51904707  T
Q  318 cact 321  Q
    ||||    
T  51904708 cact 51904711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 5994869 - 5994963
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||||||| ||||||||||||| ||| || |||| | || |||| |||| |||||||||||||||||| ||||| ||| |||| |||||||||    
T  5994869 gctagcaacagtctcttttcaacactctctccaacattcactttctaattgacttaaatcatggtgggtctcacacattggaaatgggttccact 5994963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 16318975 - 16318883
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||||||  |||||||| |||||| |||| | || |||| |||||||||||||||| || ||| ||||||||| |||| |||||||||    
T  16318975 gctagcaacactct--tttcaacactctttccaacaatcactttctaattggcttaaatcatgatgagtctcacactttggaaattggttccact 16318883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 32091555 - 32091500
Alignment:
Q  109 aaagagttgcaagaaattagattcaacaaactctccaagaacatatctaatttcta 164  Q
    |||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||    
T  32091555 aaagagttacaagaaattagtttcaacaaactctccaagaacaaacctaatttcta 32091500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 37586474 - 37586561
Alignment:
Q  234 acactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||| |||||||||||| ||| || |||||| || |||| ||| ||||||||||||||||||| ||||||||| |||| || ||||||    
T  37586474 acaccctcttttcaacactctctccaacactcactttctaattagcttaaatcatggtgggtctcacactttgaaaatgggatccact 37586561  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 8109134 - 8109065
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    ||||||||||||||||||| |||| ||| ||||| ||| || |||||||||| ||||||||| |||||||    
T  8109134 gctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtc 8109065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 51339967 - 51340059
Alignment:
Q  228 ctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||||| |||| |||| ||| | | ||||| |  |||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||    
T  51339967 ctagcaacactctttttttaacactctct-tcacactcattttcttattggcttaaatcatagtgggtctcacactttggaaataggtttcact 51340059  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 27654656 - 27654562
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||||||||||||||||||||| ||| || |||||| |  || ||||||| |||||||| ||||| |  ||||| ||| |||| |||||||||    
T  27654656 gctagcaacactctcttttcaacactctctcaaacactcaatttattattggtttaaatcaaggtggatttcacacgttggaaatgggttccact 27654562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 22882842 - 22882894
Alignment:
Q  109 aaagagttgcaagaaattagattcaacaaactctccaagaacatatctaattt 161  Q
    |||| ||| ||||||||||| |||||||||||||||||||||| | |||||||    
T  22882842 aaagggttacaagaaattagcttcaacaaactctccaagaacaaacctaattt 22882894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 22934506 - 22934558
Alignment:
Q  109 aaagagttgcaagaaattagattcaacaaactctccaagaacatatctaattt 161  Q
    |||| ||| ||||||||||| |||||||||||||||||||||| | |||||||    
T  22934506 aaagggttacaagaaattagcttcaacaaactctccaagaacaaacctaattt 22934558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 39401992 - 39401946
Alignment:
Q  259 aacacttacattcttattggcttaaatcatggtgggtcccacacttt 305  Q
    ||||||||| || |||||||||||||||||| |||||| ||||||||    
T  39401992 aacacttacttttttattggcttaaatcatgatgggtctcacacttt 39401946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 24969204 - 24969134
Alignment:
Q  93 ttacaaagagaaatacaaa-gagttgcaagaaattagattcaacaaactctccaagaacatatctaatttcta 164  Q
    |||||||||||  |||||| ||||| ||||||||||| |||||||| ||| | ||||||| ||||||||||||    
T  24969204 ttacaaagaga--tacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaatctaatttcta 24969134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 39471335 - 39471266
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    |||| |||||||||||||| |||| ||| ||||| ||| ||  ||||||||| ||||||||| |||||||    
T  39471335 gctaacaacactctcttttaaacattctctctaatactcactctcttattggtttaaatcattgtgggtc 39471266  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 41034437 - 41034525
Alignment:
Q  233 aacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||||||||||||||| ||| || |||||| || |||| ||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  41034437 aacactctcttttcaacactctatccaacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatgggttccact 41034525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 25002014 - 25002101
Alignment:
Q  234 acactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||||||||| ||| || |||||| || |||| ||||| ||||||||| ||||||| ||||||||| |||| || ||||||    
T  25002014 acactctcttttcaacactctctccaacactcactttctaattggtttaaatcatagtgggtctcacactttggaaatgggctccact 25002101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 316830 - 316784
Alignment:
Q  118 caagaaattagattcaacaaactctccaagaacatatctaatttcta 164  Q
    ||||||||||| |||||||| ||||||||||||| | ||||||||||    
T  316830 caagaaattagcttcaacaagctctccaagaacaaacctaatttcta 316784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 36325604 - 36325538
Alignment:
Q  239 ctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacacttt 305  Q
    |||||||||||| ||| || |||||| || || | |||||||||||||||||||||||  |||||||    
T  36325604 ctcttttcaacattctctccaacactcactttttaattggcttaaatcatggtgggtcttacacttt 36325538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 46793051 - 46792979
Alignment:
Q  232 caacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactt 304  Q
    ||||||| ||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||| |||||||    
T  46793051 caacactatcttttcaacactctttttaacacttacttttttattggcttaaatcatggtgggtctcacactt 46792979  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 18473821 - 18473734
Alignment:
Q  234 acactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||||||||| ||| |  |||||| || |||| ||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  18473821 acactctcttttcaacactctcttcaacactcactttctaattggcttaaatcatggtgggtctcacactttgaaaatgggttccact 18473734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 11247902 - 11247855
Alignment:
Q  274 attggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  11247902 attggcttaaatcatggtgggtctcacactttgaaaatgggttccact 11247855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 28274965 - 28274871
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||| |||||||||||||||||| ||| |  |||||  || || ||||||| |||||||| |||||||| ||||| ||| |||| |||||||||    
T  28274965 gctagtaacactctcttttcaacactctcttaaacacccactttattattggtttaaatcaaggtgggtctcacacattggaaatgggttccact 28274871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 18953166 - 18953244
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacacttt 305  Q
    |||||||||| |||||| | |||| | | |||| |||| || |||||||| |||||||||||||||| || ||||||||    
T  18953166 gctagcaacattctcttcttaacagtatctctaccactcaccttcttatttgcttaaatcatggtggatctcacacttt 18953244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 30678913 - 30678974
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcat 288  Q
    |||||||||||||| |||| | || ||| ||||||||| ||  |||||||||||||||||||    
T  30678913 gctagcaacactcttttttgagcactctctctaacactcactctcttattggcttaaatcat 30678974  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 39974202 - 39974263
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcat 288  Q
    |||| |||||||||||||| |||| ||||||||| ||| ||  ||||||||| |||||||||    
T  39974202 gctaacaacactctcttttgaacattctttctaatactcactctcttattggtttaaatcat 39974263  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 6420456 - 6420548
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||||||||||||||||||||| ||| || | |||| || |||||||||||||||||||||||||||| ||||  ||| ||||||||| ||||    
T  6420456 gctagcaacactctcttttcaacactctctccaccactcactttcttattggcttaaatcatggtgggtctcaca--ttggaaataggtttcact 6420548  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 19193504 - 19193598
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||||||||||||||||||||| ||| || |||||| || |||| ||| | ||||||||||||||||| || |||||| ||||||||| ||||    
T  19193504 gctagcaacactctcttttcaacactctctccaacactcactttctaattagtttaaatcatggtgggtctcatactttggaaataggtttcact 19193598  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 18949196 - 18949290
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||| |||||||||||||||||| | | || |||||| |  |||| ||||||||||||||||||||||| ||||||||  |||| |||||||||    
T  18949196 gctaggaacactctcttttcaacactttctccaacactcaatttctaattggcttaaatcatggtgggtctcacactttaaaaatgggttccact 18949290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 4024836 - 4024774
Alignment:
Q  259 aacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||  |||| ||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  4024836 aacacttattttctaattggcttaaatcatggtgggtctcacactttgaaaatgggttccact 4024774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 31494385 - 31494291
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||||||||||||||||||||| |||    |||||| || |  |||||||||||||||| |||||||| ||||| ||| |||| |||||||||    
T  31494385 gctagcaacactctcttttcaacactctcctaaacactcacttcattattggcttaaatcaaggtgggtctcacacattggaaatgggttccact 31494291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 19953574 - 19953480
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||||||||||| |||| | | || || ||| || || ||||||| ||||||||| ||| ||| ||||||||| |||| |||||||||    
T  19953574 gctagcaacactctctttttaacattttctccaatactcacttttttattggattaaatcatagtgagtctcacactttggaaatgggttccact 19953480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 12989369 - 12989300
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    ||||||||||||||||||| |||| ||| ||||| ||| ||  ||||||||| ||||||||| |||||||    
T  12989369 gctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtc 12989300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 20459082 - 20459017
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtg 292  Q
    |||||||||||||||||||||||| ||| || | |||| || ||||||||||||| |||| |||||    
T  20459082 gctagcaacactctcttttcaacactctctccaccactcactttcttattggcttgaatcgtggtg 20459017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 42261577 - 42261638
Alignment:
Q  109 aaagagttgcaagaaattagattcaacaaactctccaagaacatatctaatttctatgattt 170  Q
    |||||||| ||||||||||| |||||||| ||||||||||||| |  ||||||||| |||||    
T  42261577 aaagagttacaagaaattagcttcaacaagctctccaagaacaaacttaatttctacgattt 42261638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 45554732 - 45554668
Alignment:
Q  232 caacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    |||||||||||||| |||| ||| ||||| ||| || |||||||||| ||||||||| |||||||    
T  45554732 caacactctcttttgaacattctctctaatactcactttcttattggtttaaatcattgtgggtc 45554668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 28523085 - 28523169
Alignment:
Q  78 actatcaaagggtcattacaaagagaaatacaaagagttgcaagaaattagattcaacaaactctccaagaacatatctaatttcta 164  Q
    |||||||||| ||||||||||||||  |||||||| |||  || ||||||||||| |||| ||||||| || || || |||||||||    
T  28523085 actatcaaagagtcattacaaagag--atacaaagtgttataaaaaattagattccacaatctctccacgagcaaatttaatttcta 28523169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 41454311 - 41454256
Alignment:
Q  109 aaagagttgcaagaaattagattcaacaaactctccaagaacatatctaatttcta 164  Q
    |||||||||| ||||||||| |||||||| ||||| || |||| ||||||||||||    
T  41454311 aaagagttgctagaaattagcttcaacaagctctcaaaaaacaaatctaatttcta 41454256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 43400312 - 43400218
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||||||||||||||||||||| |||    |||||| |  || ||||||| |||||||| |||||||  ||||| |||  |||||||||||||    
T  43400312 gctagcaacactctcttttcaacactctcctaaacactcattttattattggtttaaatcaaggtgggtttcacacattgataataggttccact 43400218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 44152409 - 44152336
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccaca 301  Q
    |||||||||||||| | ||||||| ||| ||||||||| || || ||||||| |||||||| |||||||| ||||    
T  44152409 gctagcaacactctttgttcaacattctctctaacactcac-tttttattggtttaaatcaaggtgggtctcaca 44152336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 30706448 - 30706379
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    |||||||||||||||||||||||| ||| || |||||| || || || |||| |||||| | ||||||||    
T  30706448 gctagcaacactctcttttcaacactctctcaaacactcactttattgttggtttaaattaaggtgggtc 30706379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 35523516 - 35523456
Alignment:
Q  234 acactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtggg 294  Q
    ||||||||||||||||| ||| || |||| | || |||| ||| |||||||||||||||||    
T  35523516 acactctcttttcaacattctctccaacattcactttctaatttgcttaaatcatggtggg 35523456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 20954858 - 20954780
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacacttt 305  Q
    |||||||||||||||||||||||| ||| || |||||| || || ||||||||||||||||||||| ||| ||||||||    
T  20954858 gctagcaacactctcttttcaacactctctcaaacactcacttttttattggcttaaatcatggtgagtctcacacttt 20954780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 46994366 - 46994448
Alignment:
Q  229 tagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaat 311  Q
    ||||||||||||||||| |||  ||| ||||||||| || || ||||||||||||||||||||||||| ||||||||| ||||    
T  46994366 tagcaacactctctttttaacgctctctctaacactcacttttttattggcttaaatcatggtgggtctcacactttggaaat 46994448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 321
Target Start/End: Complemental strand, 2911934 - 2911846
Alignment:
Q  233 aacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||| ||||||||||| ||| || || ||| || || |||||||||||||||||||||| || ||||||||  ||||||||||||||    
T  2911934 aacactttcttttcaacactctctccaatactcacttttttattggcttaaatcatggtggatctcacactttagaaataggttccact 2911846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 35549651 - 35549744
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccac 320  Q
    |||||||||||||||||||||||| ||| |||| |||| |  || |||||||||||  ||||||||| |||||  ||||| |||| ||||||||    
T  35549651 gctagcaacactctcttttcaacactctctctaccactcatctttttattggcttatttcatggtggatcccatgctttgaaaatgggttccac 35549744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 24845463 - 24845525
Alignment:
Q  259 aacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||| || |||| ||||||||||||||||||| ||| ||||||||| |||| |||||||||    
T  24845463 aacactcactttctaattggcttaaatcatggtgagtctcacactttggaaatgggttccact 24845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 38065327 - 38065397
Alignment:
Q  226 cgctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    ||||||||||||||||| ||||||| ||| || || ||| || |||||||||| |||||||| ||||||||    
T  38065327 cgctagcaacactctctcttcaacactctctcaaatactcactttcttattggtttaaatcaaggtgggtc 38065397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 44350302 - 44350240
Alignment:
Q  259 aacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||| || |||| ||||||||||||||||||||||| ||||||||| |||| | |||||||    
T  44350302 aacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatggattccact 44350240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 27888460 - 27888391
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    ||||||||||||||||||| | || ||| ||||||||| ||  ||||||||| ||||||||| |||||||    
T  27888460 gctagcaacactctcttttgagcactctctctaacactcactctcttattggtttaaatcattgtgggtc 27888391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 43363548 - 43363620
Alignment:
Q  93 ttacaaagagaaatacaaa-gagttgcaagaaattagattcaacaaactctccaagaacatatctaatttcta 164  Q
    ||||||| ||| ||||||| ||||| ||| ||||||| |||||||| ||||||||||||| | ||||||||||    
T  43363548 ttacaaatagagatacaaaagagttacaataaattagtttcaacaagctctccaagaacaaacctaatttcta 43363620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 25686839 - 25686906
Alignment:
Q  229 tagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    ||||||||||||||||| |||| ||||||||| ||| |   ||||||||| ||||||||| |||||||    
T  25686839 tagcaacactctcttttgaacattctttctaatactcattatcttattggtttaaatcattgtgggtc 25686906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 26639397 - 26639342
Alignment:
Q  109 aaagagttgcaagaaattagattcaacaaactctccaagaacatatctaatttcta 164  Q
    |||| ||| ||||||||||   ||||||||||||||||||||||| ||||||||||    
T  26639397 aaagggttacaagaaattaacatcaacaaactctccaagaacatacctaatttcta 26639342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 27949451 - 27949382
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    ||||||||||||||||||| |||| ||| ||||| ||| ||  ||||||| | ||||||||| |||||||    
T  27949451 gctagcaacactctcttttgaacactctctctaatactcactctcttattagtttaaatcattgtgggtc 27949382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 36574592 - 36574663
Alignment:
Q  93 ttacaaagagaaatacaaagagttgcaagaaattagattcaacaaactctccaagaacatatc-taatttcta 164  Q
    ||||||||||| ||| |||| ||| ||||||||||| |||||||||||| | ||||||| ||| |||||||||    
T  36574592 ttacaaagagatata-aaagggttacaagaaattagcttcaacaaactcacaaagaacaaatcttaatttcta 36574663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 37490074 - 37490002
Alignment:
Q  234 acactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttg 306  Q
    ||||||||||||||||| ||| || |||||| || | |||||||| |||||| | ||| |||| |||||||||    
T  37490074 acactctcttttcaacactctctcaaacactcacttacttattggtttaaatgaaggtcggtctcacactttg 37490002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 40631197 - 40631269
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtccca 299  Q
    |||| |||||||| ||||||||||  || ||||||||||||||| |||||||||||||||||||||| |||||    
T  40631197 gctaacaacactcacttttcaacacactctctaacacttacatttttattggcttaaatcatggtggatccca 40631269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 52123958 - 52124027
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    ||||||||||||||||||| |||| ||| ||||| ||| || |||||||||| ||||||||| |||||||    
T  52123958 gctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtc 52124027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 53655419 - 53655502
Alignment:
Q  238 tctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||||| ||| || |||||| || |||| ||||||||||||||| || | || ||||||||| |||| |||||||||    
T  53655419 tctcttttcaacactctctccaacactcactttctaattggcttaaatcatagttgatctcacactttgaaaatgggttccact 53655502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 7640596 - 7640690
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||| |||||||||||||||||| |||  | |||||| || | |||||||| || ||||| |||| ||| ||||||| | ||||||||||||||    
T  7640596 gctagtaacactctcttttcaacactctcacaaacactcacttccttattggtttcaatcaaggtgagtctcacacttaggaaataggttccact 7640690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 22813273 - 22813367
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||| | |||||||||||||| ||||| |  || |  | |||||||||||||||||||||||| ||| ||||||||  |||| |||||||||    
T  22813273 gctagcagcgctctcttttcaacactcttttttccaatccccttcttattggcttaaatcatggtgagtctcacactttcgaaatgggttccact 22813367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 41451897 - 41451966
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    ||||||||||||||||||| |||| ||| ||||| ||| ||  ||||||||| ||||||||| |||||||    
T  41451897 gctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtc 41451966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 10798280 - 10798372
Alignment:
Q  229 tagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||| |||||||||| |||||  |||| |||| || | |||||||||||| || ||||||| || |||||| ||||  ||||||||    
T  10798280 tagcaacactcacttttcaacactcttttcaacatttactttttaattggcttaaattattgtgggtctcatactttggaaatgagttccact 10798372  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 27243224 - 27243140
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaat 311  Q
    ||||||||||||||||||| |||| ||||||||| ||| ||  ||| ||||| ||||||||  |||||||  |||||||| ||||    
T  27243224 gctagcaacactctcttttgaacactctttctaatactcactctctcattgggttaaatcaatgtgggtcatacactttggaaat 27243140  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 43657930 - 43657870
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatca 287  Q
    ||||||||||||||||||| |||| | |||| |||||| || |||| ||||||||||||||    
T  43657930 gctagcaacactctctttttaacactgtttccaacactcactttctaattggcttaaatca 43657870  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 24734883 - 24734816
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtggg 294  Q
    ||||||||||||||||||| |||| ||| ||||| ||| ||  ||||||||| ||||||||| |||||    
T  24734883 gctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtggg 24734816  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 35138797 - 35138852
Alignment:
Q  109 aaagagttgcaagaaattagattcaacaaactctccaagaacatatctaatttcta 164  Q
    |||||||||||||||||||  |||||||||||| ||||||||| |  |||||||||    
T  35138797 aaagagttgcaagaaattaacttcaacaaactcaccaagaacaaacataatttcta 35138852  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 7791975 - 7791913
Alignment:
Q  259 aacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||| || |||| ||||||||||||||  ||||||| ||||||||| |||||| |||||||    
T  7791975 aacactcactttctaattggcttaaatcacagtgggtctcacactttggaaatagattccact 7791913  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 20791474 - 20791413
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcat 288  Q
    ||||||| ||||||||||| |||| ||| ||||| ||| || |||||||||| |||||||||    
T  20791474 gctagcaccactctcttttgaacactctctctaatactcactttcttattggtttaaatcat 20791413  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 318
Target Start/End: Original strand, 34706590 - 34706674
Alignment:
Q  234 acactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttcc 318  Q
    |||||||||||| |||| | | || |||||  || |||| ||| |||||||||||||||| || ||||||||| |||| ||||||    
T  34706590 acactctcttttgaacactatctccaacacccactttctaatttgcttaaatcatggtggatctcacactttggaaatgggttcc 34706674  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 321
Target Start/End: Complemental strand, 24683743 - 24683656
Alignment:
Q  234 acactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||||||||| | | || |||||| || |||| |||||||||||||||| |||||| |||| |||| |||| |||||||||    
T  24683743 acactctcttttcaacactatctccaacactcactttctgattggcttaaatcatgatgggtctcacattttggaaatgggttccact 24683656  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 38091529 - 38091440
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggtt 316  Q
    |||||||||| ||||||||||||| ||| || |||||| || |||| |||||||||||||||| | |||| || |||||| |||| ||||    
T  38091529 gctagcaacattctcttttcaacactctctccaacactcactttctaattggcttaaatcatgataggtctcatactttggaaatgggtt 38091440  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 30909474 - 30909406
Alignment:
Q  78 actatcaaagggtcattacaaagagaaatacaaagagttgcaagaaattagattcaacaaactctccaaga 148  Q
    |||||||| | |||||||||||||||  ||||||||||| ||||||||||| || ||||| ||||||||||    
T  30909474 actatcaacgagtcattacaaagaga--tacaaagagttacaagaaattagtttaaacaagctctccaaga 30909406  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 11574036 - 11574126
Alignment:
Q  231 gcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||||| ||||||||||| ||||||  ||||| || |  |||||||||||||||| |||||||| ||||| ||| |||| |||| ||||    
T  11574036 gcaacactttcttttcaacactctttcatacactcacctcattattggcttaaatcaaggtgggtctcacacattgaaaattggtttcact 11574126  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 45524924 - 45524971
Alignment:
Q  274 attggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    ||||||||||||||||||||||  ||||||||| |||| |||||||||    
T  45524924 attggcttaaatcatggtgggtttcacactttggaaatgggttccact 45524971  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 13407325 - 13407411
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaatag 313  Q
    ||||||||||||||||||| |||| ||| ||||||||| |   ||| ||||| ||||||||  |||||||  |||||||| ||||||    
T  13407325 gctagcaacactctcttttgaacactctctctaacactcattctctcattgggttaaatcaatgtgggtcatacactttgaaaatag 13407411  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 12212126 - 12212219
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccac 320  Q
    |||||||||||||||||||||||| ||| ||||||| | ||  | || |||| | ||||||  |||||||| |||||||| |||| ||| ||||    
T  12212126 gctagcaacactctcttttcaacattctctctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccac 12212219  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 12456554 - 12456647
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccac 320  Q
    |||||||||||||||||||||||| ||| ||||||| | ||  | || |||| | ||||||  |||||||| |||||||| |||| ||| ||||    
T  12456554 gctagcaacactctcttttcaacattctctctaacattcactcttttcttgggtgaaatcaatgtgggtcctacactttggaaatgggtcccac 12456647  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 16983572 - 16983511
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcat 288  Q
    ||||||||||||||||||| |||| ||| ||||| ||| ||  ||||||||| |||||||||    
T  16983572 gctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcat 16983511  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 33655407 - 33655452
Alignment:
Q  120 agaaattagattcaacaaactctccaagaacatatctaatttctat 165  Q
    |||||| || |||||||||||||| ||||||| |||||||||||||    
T  33655407 agaaatcagcttcaacaaactctctaagaacaaatctaatttctat 33655452  T

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Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 297015 - 296921
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||||||||||||||||||||||| ||| || |||||| || |  ||||||| |||||| | |||||||| ||||| ||| |||| |||||||||    
T  297015 gctagcaacactctcttttcaacactctctcaaacactcacttcattattggtttaaatgaaggtgggtctcacacattggaaatgggttccact 296921  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 12690431 - 12690337
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaataggttccact 321  Q
    |||| ||| |||||||||||||||  || || ||||||  | | |||||||| |||||||| |||||||| ||||||||| |||||| |||||||    
T  12690431 gctaacaatactctcttttcaacatcctctcaaacactctcttccttattggtttaaatcaaggtgggtctcacactttggaaatagattccact 12690337  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 6163527 - 6163604
Alignment:
Q  234 acactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtcccacactttgtaaat 311  Q
    ||||||||||||||| | ||| ||||||||| || || | ||||||||||||||| ||| ||| ||||||||| ||||    
T  6163527 acactctcttttcaatattctctctaacactcactttttaattggcttaaatcatagtgcgtctcacactttggaaat 6163604  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 34905514 - 34905445
Alignment:
Q  227 gctagcaacactctcttttcaacaatctttctaacacttacattcttattggcttaaatcatggtgggtc 296  Q
    ||||||||||||||||||| ||||  || ||||| ||| ||  ||||||||| ||||||||| |||||||    
T  34905514 gctagcaacactctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtc 34905445  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 490412 - 490473
Alignment:
Q  109 aaagagttgcaagaaattagattcaacaaactctccaagaacatatctaatttctatgattt 170  Q
    |||||||| ||||||||||| |||||||| ||||||||||||| |  ||||||||| |||||    
T  490412 aaagagttacaagaaattagcttcaacaagctctccaagaacaaacttaatttctacgattt 490473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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