View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_low_56 (Length: 306)

Name: NF3114_low_56
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_low_56
NF3114_low_56
[»] chr3 (1 HSPs)
chr3 (1-292)||(52804280-52804575)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 52804280 - 52804575
Alignment:
Q  1 cgattacgacactcttgaaatatggttggactgatgcttacgacattctttggccgttga---aaattatcaattttcttgtattgcnnnnnnnnttatg 97  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||   ||||||||||||||||||||||||        |||||    
T  52804280 cgattacgacactcttgaaatatggttggactgatacttacgacactctttggccgttgatgaaaattatcaattttcttgtattgcaaaaaaaattatg 52804379  T
Q  98 tccatcttttttatggaacattgttcttatgaacatcacatacatggataccgtttagtaaatagcaatacactcaaaataattgttaatgtgacgaaga 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52804380 tccatcttttttatggaacattgttcttatgaacatcacatacatgaataccgtttagtaaatagcaatacactcaaaataattgttaatgtgacgaaga 52804479  T
Q  198 gagaaagacgttaattttaaagaaacacaaatgtatgggaatgtattttaataag-tgttcgacaacttttagttgtcaaaataagttttttatgt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52804480 gagaaagacgttaattttaaagaaacacaaatgtatgggaatgtattttaataagttgttcgacaacttttagttgtcaaaataagttttttatgt 52804575  T

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