View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_62 (Length: 282)
Name: NF3114_low_62
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 55711319 - 55711555
Alignment:
| Q |
17 |
caggaagaacttcacttatactcttcaggtgaaagatcagattggtagctatttctacttcccg-cagtttgaatgaataaagccgctgttgcatttggt |
115 |
Q |
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| T |
55711319 |
caggaagaacttcacttatactcttcaggtgaaagatcagattggtagctatttctacttcccgtcattttgaatgaataaagccgctgttgcatttggt |
55711418 |
T |
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| Q |
116 |
agcttcagaatttggagccgtgctcacattcacattcctgtcccctttcctccctccgcaggagactttaccatacttgctggtgattggttcaagctag |
215 |
Q |
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| T |
55711419 |
agcttcagaatttggagccgtgctcacattcagattcctgtcccctttcctccctccgcaggagactttaccatacttgctggtgattggttcaagctag |
55711518 |
T |
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| Q |
216 |
gccaccgcgtaattaaatcttttgcattcatttcaat |
252 |
Q |
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| T |
55711519 |
gccaccgtgtaattaaatcttttgcattcatttcaat |
55711555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 55295399 - 55295627
Alignment:
| Q |
19 |
ggaagaacttcacttatactcttcaggtgaaagatcagattggtagctatttctacttcccg-cagtttgaatgaataaagccgctgttgcatttggtag |
117 |
Q |
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| T |
55295399 |
ggaagaacttcacttacactctccaggtgaaggaccagatcggtacctacttctacttcccatcacttggaatgcataaagctgctggtgcatttggtgg |
55295498 |
T |
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| Q |
118 |
cttcagaatttggagccgtgctcacattcacattcctgtcccctttcctccctccgcaggagactttaccatacttgctggtgattggttcaagctaggc |
217 |
Q |
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| T |
55295499 |
catcagaatttggagccgtcctcgcattc------ctgttccttttcctcctcctgctggggactttaccttacttgctggtgattggtccaagctaggc |
55295592 |
T |
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| Q |
218 |
caccgcgtaattaaatcttttgcattcatttcaat |
252 |
Q |
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| T |
55295593 |
caccgcgtaatcaaattctttgcattcatttcaat |
55295627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 17346340 - 17346394
Alignment:
| Q |
22 |
agaacttcacttatactcttcaggtgaaagatcagattggtagctatttctactt |
76 |
Q |
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||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |
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| T |
17346340 |
agaacttcacttatattcttcaagtaaaagatcagattggtagctatttctactt |
17346394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 17137447 - 17137400
Alignment:
| Q |
29 |
cacttatactcttcaggtgaaagatcagattggtagctatttctactt |
76 |
Q |
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| T |
17137447 |
cacttatattcttcaagtaaaagatcagattggcagctatttctactt |
17137400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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