View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_65 (Length: 277)
Name: NF3114_low_65
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_65 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 5722621 - 5722364
Alignment:
| Q |
18 |
gattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5722621 |
gattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaacc |
5722522 |
T |
|
| Q |
118 |
ttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgaggggtattatctttgattaaccccaatttgtgtgtgcacatttcctcttt |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5722521 |
ttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaaggtgaggggtattatctttgattaaccacaatttgtgtgtgcacatttcctcttt |
5722422 |
T |
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| Q |
218 |
ataatatattattaccgttnnnnnnntgcaggaagatctttactatccacatcctttg |
275 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
5722421 |
ataatatattattaccgttaaaaaaatgcaggaagatctttactatccccatcctttg |
5722364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 5692281 - 5692077
Alignment:
| Q |
18 |
gattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5692281 |
gattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagttgagagaagaactccttacagaacc |
5692182 |
T |
|
| Q |
118 |
ttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgaggggtattatctttgattaaccccaatttgtgtgtgcacatttcctcttt |
217 |
Q |
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| T |
5692181 |
ttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgaggagtattatctctgattaaccacaatgtgtgtgtttacatatcctcttt |
5692082 |
T |
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| Q |
218 |
ataat |
222 |
Q |
| |
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||||| |
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| T |
5692081 |
ataat |
5692077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 5670507 - 5670314
Alignment:
| Q |
18 |
gattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |
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| T |
5670507 |
gattggtatacatgcctatgtcttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaagttgagagaagaactccttacagaaca |
5670408 |
T |
|
| Q |
118 |
ttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgaggggtattatctttgattaaccccaatttgtgtgtgcacatttc |
211 |
Q |
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| T |
5670407 |
ttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgaggggtattatctttgattaaccacaatttgtgtgtgcacatttc |
5670314 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 5670168 - 5670100
Alignment:
| Q |
207 |
atttcctctttataatatattattaccgttnnnnnnntgcaggaagatctttactatccacatcctttg |
275 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
5670168 |
atttcctctttataatatattattactgttaaaaaaatgcaggaagatctttactatccacatcctttg |
5670100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 12137825 - 12137677
Alignment:
| Q |
18 |
gattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| | |||||| ||||||||||||||||| ||| ||||| |
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| T |
12137825 |
gattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatcttacagttgagagaagaactctatactgaacc |
12137726 |
T |
|
| Q |
118 |
ttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtg |
166 |
Q |
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||||| ||||||| ||| |||||| |||||||| ||||| |||||| |
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| T |
12137725 |
ttatgcaaaagttaattggaaaaaagcacgtcaccagtgtgcgaaggtg |
12137677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 92826 - 92678
Alignment:
| Q |
21 |
tggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaacctta |
120 |
Q |
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|||||||| | || |||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||||| | ||| ||||||| |
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| T |
92826 |
tggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcgtcttacagttgagagaagaacttcatactcaacctta |
92727 |
T |
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| Q |
121 |
tgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgagg |
169 |
Q |
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| T |
92726 |
tggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgagg |
92678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 103472 - 103622
Alignment:
| Q |
18 |
gattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaacc |
117 |
Q |
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|
||||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||| | |||||| |||||||||||||||||| ||| | || |
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| T |
103472 |
gattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagagaagaactccatactcagcc |
103571 |
T |
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| Q |
118 |
ttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgag |
168 |
Q |
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|||||||||| || ||| ||| |||||||||||||||||||||||| |
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| T |
103572 |
ttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgag |
103622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 164443 - 164547
Alignment:
| Q |
23 |
gtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatg |
122 |
Q |
| |
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||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | |||||| |||||||||||||||||| ||| ||||||||| |
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| T |
164443 |
gtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatg |
164542 |
T |
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| Q |
123 |
aaaaa |
127 |
Q |
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||||| |
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| T |
164543 |
aaaaa |
164547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 13052404 - 13052547
Alignment:
| Q |
25 |
atacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatgaa |
124 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||| |||| |||||||||| | |||||| |||||||||||||| | | || ||||||| ||| |
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| T |
13052404 |
atacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaagaaattcataatcaaccttacgaa |
13052503 |
T |
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| Q |
125 |
aaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgag |
168 |
Q |
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||||||| ||| ||| |||||||| ||||||||||||||| |
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| T |
13052504 |
aaagttgattggttcaaatcacgtcaccaatgtgcaaaggtgag |
13052547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 1942043 - 1941994
Alignment:
| Q |
30 |
tgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacacca |
79 |
Q |
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|||| |||| ||||||||| |||||||||||||| ||||||||||||||| |
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| T |
1942043 |
tgccaatgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
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