View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_low_69 (Length: 272)
Name: NF3114_low_69
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_69 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16838124 - 16837859
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16838124 |
tctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacacattttgacttgaa |
16838025 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaa-aaaatctagatctcttgtctttaga |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16838024 |
aatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacaccattggaaaaaaatctagatctcttgtctttaga |
16837925 |
T |
|
| Q |
200 |
gtccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837924 |
gtccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
16837859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16797612 - 16797348
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16797612 |
tctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctacaatgatgaaagggtaaaaacacattttgacttgaa |
16797513 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16797512 |
aatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtctatcatagaaaacaccattggaaaaaatctagaactcttgtctttagag |
16797413 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16797412 |
tccttgcgaaaaaaggttcaagaaattttgcaaaaccaaaggtatttgcttgttcttgatgatgt |
16797348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 17069952 - 17069688
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069952 |
tctctgtctattccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttgacttgaa |
17069853 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069852 |
aatatgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacaccattggaaaaaatctagatctcttgtctttagag |
17069753 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17069752 |
tcaaggcaaaaaaaggttcaagaaattttgcaaagcaaaaggtatttgcttgttcttgatgatgt |
17069688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 16867720 - 16867982
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867720 |
tctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtcttcaatgatgaaagggtaaaaacacattttgacttgaa |
16867819 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867820 |
aatatgggtgt--gtttcggacgatttcagtttgatgaaaattttagagtccatcacagaaaacaccattggaaaaaatctagatctcttgtctttagaa |
16867917 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16867918 |
accttgagaaaaaaggttcaagaaattttgcaaaacaaaaagtatttgcttgttcttgatgatgt |
16867982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16658455 - 16658191
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658455 |
tctctgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtcttcaatgatgaaagggtaaaaacacattttgacttgaa |
16658356 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16658355 |
aatatgggtgtgtgtttcggatgatttcagtttactgaaaattttagagtccatcatagaaaacaccattggaaaaaacctagatctcttgtctttagag |
16658256 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16658255 |
tcaaggaaaaaaaaggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
16658191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16987900 - 16987636
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||| || ||| | ||||||||| |||| |||||| |||||| |||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
16987900 |
tctctgtctattccattgttggccacggtggatatggaaaaacagcacttgctcaaatggtcttcaatgatgaaagtgtaaagacacattttgacttgaa |
16987801 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||| |||||||||| ||||| |||| ||| ||||||||||||| | |||||| |||||||||| |
|
|
| T |
16987800 |
aatatgggtgtgtgtttctgatgatttcagtatgatgaaagttttagagtcgatcattgaaaacactattggaaaaaatccacatctctcgtctttagag |
16987701 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||| |||||| |||||||||||| | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16987700 |
tcaatgcaaaaaaatgttcaagaaattctacaaaacaaaaggtatttacttgttcttgatgatgt |
16987636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 18872899 - 18873163
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||| ||| ||||||| |
|
|
| T |
18872899 |
tctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtcttcaatgatgaaagggtagatacacactttaacttgaa |
18872998 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||| || |||| ||| ||||||| |||| |||||||||||||| |||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
18872999 |
aatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcatagaatccaccgatggaaaaaatccagatctctcgtctttagaa |
18873098 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||| ||| |||||| || | ||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
18873099 |
tcaatgcaaaagaaggttaaaaatattttgcaaaacaaaaggtatctacttgttcttgatgatgt |
18873163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 18805905 - 18806169
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| | |||||||||||||||| | ||||| ||| ||||||| |
|
|
| T |
18805905 |
tctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtattcaatgatgaaagggtagatacacactttaacttgaa |
18806004 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||| || |||| ||| ||||||| |||| |||||||||||||| | || ||||||||| || |||||||| ||||||||| |
|
|
| T |
18806005 |
aatatgggtgtgtgtttctgaggattttagtatgatgaaagttttgcagtccatcatagaatccgccgttggaaaaagtccagatctctcgtctttagaa |
18806104 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||| ||| | |||||| ||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
18806105 |
tcaatgcaaaaggaagttcaaaaaattttgcaaaacaaaaggtatctacttgttcttgatgatgt |
18806169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16788411 - 16788149
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||| | || | | | |||||||||||||| |||||| | || | ||| ||||||| |||| || ||||||||| |||| |
|
|
| T |
16788411 |
tctctgtctattccattgttggcctaggtgaatatggaaaaacaacacttgctcaattagtatacaacaatgaaagagtaagaaaccattttgacctgaa |
16788312 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
||||||| | | |||||| ||| ||||||| |||||| |||||||| || |||||||| ||| ||||||||||||| |||||||| ||||| ||| |
|
|
| T |
16788311 |
aatatggatttttgtttcagatgatttcagcatgatgaaggttttagag-ccgtcatagaagacacaattggaaaaaatccagatctctcatctttggag |
16788213 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
16788212 |
tcaatgcgaaagaaggttcaagaaatttt-caaaacaaaaggtatctacttgttcttgatgatgt |
16788149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16781551 - 16781287
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||| | || ||| | |||||||||||||| |||||| |||| | ||| |||||||| |||| || |||||||| ||||| |
|
|
| T |
16781551 |
tctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtatacaaggatgaaagcgtaaccacccattttgatttgaa |
16781452 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
||||||||| |||||||| ||| ||||||| |||||||| || | || ||||||||| ||| |||| |||||| |||||| | ||||||| |
|
|
| T |
16781451 |
aatatgggtttgtgtttcagatgatttcagcatcatgaaaatcctacactctatcatagaatctgccactggacaaaatcataatctctcgactttagaa |
16781352 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
| ||| |||||| ||||||||| ||||||||| ||||| |||||| ||||| || |||||||| |
|
|
| T |
16781351 |
ttaatgcaaaaaaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactggatgatgt |
16781287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 16844279 - 16844015
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||| ||| | ||||| ||| |||| |||||| |||||| ||||||||| |||||||| || |||||| ||||| |
|
|
| T |
16844279 |
tctctgtctattccattgttggtcatggtggatatggaaagacagcacttgctcaactggtcttcaatgatgagagggtaaatactcattttcctttgaa |
16844180 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||| |||||| ||||| |||| ||| ||||| || ||| ||||||| | | |||| | ||||| | |
|
|
| T |
16844179 |
aatatgggtttgtgtttctgatgattttagtatgatgaagattttgcagtcgatcgtagaatccaaagatgggaaaaatccaaacctctcgactttacaa |
16844080 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
| ||| | ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
16844079 |
gcaatgcaagaaaaggttcaaactattttgcaaaacaaaaggtatttacttgtccttgacgatgt |
16844015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18870422 - 18870470
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacact |
49 |
Q |
| |
|
||||| ||||||| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
18870422 |
tctctttctattccattgttggtgttggtgggcaaggaaaaacaacact |
18870470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 265
Target Start/End: Complemental strand, 37929 - 37669
Alignment:
| Q |
5 |
tgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaaaata |
104 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929 |
tgtctgttccattgttggtgttggcggacaaggaaaaacaacactcgctcaaatggtctacaatgatgaaagggtaaaaacacattttgacttgaaaata |
37830 |
T |
|
| Q |
105 |
tgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagagtcct |
204 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37829 |
tgggtgtgtgtttcggatgatttcagtttgatgaaaattttagagtccatcatagaaaacaccattggaaaaaacctagatctcttgtctttagagtcaa |
37730 |
T |
|
| Q |
205 |
tgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37729 |
ggaaaaaaaaggttcaagatattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
37669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 13295 - 13031
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||| || ||| | |||||||||||||| |||||| |||||| |||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
13295 |
tctctgtctattccattgttggccacggtggatatggaaaaacaacacttgctcaaatggtcttcaatgatgaaagtgtaaagacacattttgacttgaa |
13196 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
13195 |
aatatgggtgtgtgtttctgatgatttcagtatgatgaaggttttagagtccatcatagaagacaccattggaaaaaatccaaatctctcctctttagag |
13096 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13095 |
tcaatgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
13031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 8953 - 8689
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||| || ||| | |||||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8953 |
tctctgtctattctattgttggccacggtggatatggaaaaacaacacttgctcaaacagtcttcaatgatgaaagggtaaagacacattttgacttgaa |
8854 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||| | | || ||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
8853 |
aatatgggtgtgtgtttctggtgatatcaatgcgatgaaagttttagagtccatcatagaaaacaccattggaaaaaatccacatctctcgtctttagag |
8754 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||| | ||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
8753 |
tcaatgcaacaaaaggttcaagaaattttgcaaaaaaataggtatttacttgttcttgatgatgt |
8689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 5125 - 4861
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| | |||||| ||||||||| | ||||| ||| ||||||| |
|
|
| T |
5125 |
tctctgtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatgaggaaagggtagatacacactttaacttgaa |
5026 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||| || |||| | | ||||||| |||| |||||||||||||| |||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
5025 |
aatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatcatagaatccaccgatggaaaaaatccagatctctcgtctttagaa |
4926 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||| ||| |||||| || | ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
4925 |
tcaatgcaaaagaaggttaaaaatattttgcaaaacaaaagatatctacttgttcttgatgatgt |
4861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 9805 - 9541
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
|||| |||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| | |||||||||||||||| | ||||| ||| ||||||| |
|
|
| T |
9805 |
tctcngtctattccattgttggtgttggtgggcaaggaaaaacaacacttgctcaagtggtgttcaatgatgaaagggtagatacacactttaacttgaa |
9706 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
|||||||||||||||||| || |||| | | ||||||| |||| |||||||||||||| |||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
9705 |
aatatgggtgtgtgtttctgaggattttaatatgatgaaagttttgcagtccatcatagaatccaccgatggaaaaaatccagatctctcgtctttagaa |
9606 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||| ||| |||||| || | ||||||||||| ||||| ||| | ||||||||||||||||| |
|
|
| T |
9605 |
tcaatgcaaaagaaggttaaaaatattttgcaaaataaaagatatctacttgttcttgatgatgt |
9541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 38939068 - 38939332
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| ||||||||| | || ||| | |||||||||||||| |||||| |||||| ||| ||||||| |||| || |||||||| ||||| |
|
|
| T |
38939068 |
tctctgtctattccattgttggtctaggtggatatggaaaaacaacacttgctcaattggtctacaacaatgaaagcgtaaccacccattttgatttgaa |
38939167 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
||||||||| |||||||| ||| ||||||| ||||||||| || | |||||||||||| ||| |||| |||||| || ||||| |||| || |
|
|
| T |
38939168 |
aatatgggtttgtgtttcagatgatttcagcatgatgaaaatcctacactccatcatagaatctgccactggacaaaatcataatttcttgactttggaa |
38939267 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||| |||||| ||||||||| ||||||||| |||||||||||| ||||| || |||||||| |
|
|
| T |
38939268 |
tcaatgcaaaaaaaagttcaagaagttttgcaaagcaaaaggtatttacttgtactggatgatgt |
38939332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 7053010 - 7053227
Alignment:
| Q |
36 |
ggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaaaatatgggtgtgtgtttcggataatttcagttcga |
135 |
Q |
| |
|
|||||||||||||| |||||| |||||| || |||||||| |||| || ||||||||||||||||||||||| |||||||| ||| ||||||| || |
|
|
| T |
7053010 |
ggaaaaacaacacttgctcaattggtctataacgatgaaagtgtaagcacccattttgacttgaaaatatgggtttgtgtttcagatgatttcagcatga |
7053109 |
T |
|
| Q |
136 |
tgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagagtccttgcgaaaaaaggttcaagaaattttgcaaaa |
235 |
Q |
| |
|
| ||||| || | |||||||||||| ||| ||| |||||| |||||| ||| |||| ||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
7053110 |
ttaaaatcctacactccatcatagaatctgccacaggacaaaatcctaatctctcttctctagaatccatgcaaaaaaaggttcaagaagttttgcaaag |
7053209 |
T |
|
| Q |
236 |
caaaaggtatttgcttgt |
253 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
7053210 |
caaaaggtatttacttgt |
7053227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 9596 - 9332
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||| | || ||| | |||||||||||||| |||||| |||| | ||| || ||||| |||| || |||||||| ||||| |
|
|
| T |
9596 |
tctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtttacaacgaagaaagcgtaaccacccattttgatttgaa |
9497 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
||||||||| |||||||| ||| ||||||| ||||||||| || | |||||||||||| ||| |||| ||| || || ||||| |||| || |
|
|
| T |
9496 |
aatatgggtttgtgtttcagatgatttcagcatgatgaaaatcctacactccatcatagaatctgccactggacaaagtcataatttcttgactttggaa |
9397 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||| |||||| ||||||||| ||||||||| ||||| |||||| ||||| || |||||||| |
|
|
| T |
9396 |
tcgatgcaaaaaaaagttcaagaagttttgcaaagcaaaaagtatttacttgtactcgatgatgt |
9332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 13378543 - 13378279
Alignment:
| Q |
1 |
tctctgtctattcaattgttggtgttggcggacaaggaaaaacaacactcgctcaagtggtctgcaatgatgaaagggtaaaaacacattttgacttgaa |
100 |
Q |
| |
|
||||||||||||| |||||||| | || ||| | |||||||||||||| |||||| |||| | ||| ||||||| |||| || || ||||||||||| |
|
|
| T |
13378543 |
tctctgtctattccattgttggcctaggtggatatggaaaaacaacacttgctcaattggtgtacaacgatgaaaacgtaagcacccactttgacttgaa |
13378444 |
T |
|
| Q |
101 |
aatatgggtgtgtgtttcggataatttcagttcgatgaaaattttagagtccatcatagaaagcaccattggaaaaaatctagatctcttgtctttagag |
200 |
Q |
| |
|
||||||||| |||||||| ||| |||||||| || |||||| || | || ||||||||| | ||| ||||| ||||| ||||||| || |
|
|
| T |
13378443 |
aatatgggtttgtgtttctgatgatttcagtatgaagaaaatcctacattctatcatagaatctgaaacaggacgaaatccgaatctcatgtctttggaa |
13378344 |
T |
|
| Q |
201 |
tccttgcgaaaaaaggttcaagaaattttgcaaaacaaaaggtatttgcttgttcttgatgatgt |
265 |
Q |
| |
|
|| ||| |||||| ||||||||| ||||||||| |||||||||||| ||||| || |||||||| |
|
|
| T |
13378343 |
tcaatgcaaaaaaaagttcaagaagttttgcaaagcaaaaggtatttacttgtactagatgatgt |
13378279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University