View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_low_7 (Length: 602)
Name: NF3114_low_7
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_7 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 297 - 592
Target Start/End: Original strand, 24069056 - 24069351
Alignment:
| Q |
297 |
aacaaaaatgattgagtggcactccaataatggatgttgtctttctttcatcctcaattggcgtttgaaagaaggtgaaaatttgtggtcacaaacaaat |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24069056 |
aacaaaaatgattgagtggcactccaataatggaccttgtctttctttcatcctcaattggcgtttgaaagaaggtggaaatttgtggtcacaaacaaat |
24069155 |
T |
|
| Q |
397 |
tgttgatttggtaaatagcacatacttgaaatagcaaaacaaagtttgttacacccccatgattttagctgactaagccttagtagttttttccaacaga |
496 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24069156 |
tgttgatatggtaaatagcacatacttgaaatagcaaaacaaagtttgttacacccccatgattttagctgactaagccttagtagttttttccaacaga |
24069255 |
T |
|
| Q |
497 |
atcttcattatttctttctttgtgggtaggttaaaacatctaaaccttccatctttctctccctttctatccaaaaattatcatttggtaattcat |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
24069256 |
atcttcattatttctttctttgtgggtaggttaaaacatctaaaccttccatctttctctccctttctatccaaaaatcataatttggtatttcat |
24069351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 149742 - 149646
Alignment:
| Q |
86 |
taatatgtatttatacaatgatgttgccatgggtaccaaatatcttggataccaagtatgtctatcttgggcctcaattatatctaaccaatatata |
182 |
Q |
| |
|
|||||| ||||||| ||||||||||| | |||| || || |||||| || |||||| |||||| |||| | |||||||| |||||| |||||||| |
|
|
| T |
149742 |
taatatatatttatccaatgatgttgtcttgggcactaagtatctttgacaccaagagtgtctaacttgaacttcaattatctctaactaatatata |
149646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 20698645 - 20698585
Alignment:
| Q |
120 |
accaaatatcttggataccaagtatgtctatcttgggcctcaattatatctaaccaatata |
180 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| ||| |||||||| || ||| |||||| |
|
|
| T |
20698645 |
accaaatatcttgggcaccaagtatgtctaactttggcatcaattatctccaactaatata |
20698585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University