View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_73 (Length: 259)
Name: NF3114_low_73
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 8910644 - 8910849
Alignment:
| Q |
36 |
taaagtgacaaataagtaacaaactattaatttttgtttacaacaaaaaatgaaaactagaatttcaacgccatacatggcagtattttaatatgtagtt |
135 |
Q |
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| T |
8910644 |
taaagtgacagataagtaacaaactattaatttttgtttacaacaaaaa-tgagaactagaatttcaacgccatacatgtcagtattttaatatgtagtt |
8910742 |
T |
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| Q |
136 |
gttatagaactttgcaaaacctcaacacatcgtaagagtcaaattcagagactgaatattcgaggagaaaagatagaaatgagtttgatttcatttgaac |
235 |
Q |
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| T |
8910743 |
gttatagaactttgcaaaagctcaacacatcgtaagagtcaaattcagagactgaatattcgaggagaaaagatagaaatgagtttgatttcatttgaac |
8910842 |
T |
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| Q |
236 |
atgtgat |
242 |
Q |
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||||||| |
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| T |
8910843 |
atgtgat |
8910849 |
T |
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