View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_78 (Length: 251)
Name: NF3114_low_78
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2709626 - 2709862
Alignment:
| Q |
1 |
aatacctggatctgaaggagtcttccattaagtggcttttactctttctcctgttatttggttggtgctaattatcatattttcaatgaaagcatttgac |
100 |
Q |
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|||| ||||| |||||||||| |||||| ||||||||||||||||||| |||||| |||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
2709626 |
aatagctggagctgaaggagttttccatgaagtggcttttactctttcacctgttttttggttgctgctaagtatcatatttgcaatgaaagcatttgat |
2709725 |
T |
|
| Q |
101 |
ggatgcttgccactctcccatattatgttgcctgtagtgttttcaagcaaaacaagatttccatcattttgaagttgagcagtgacattagaatttgatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
2709726 |
ggatgcttgccactctcccatattatgttgcctgtagtgttttcaagcaaagcaagatttccatcattttgtagctgagcagtgacattagaatttgatg |
2709825 |
T |
|
| Q |
201 |
atgccaaattacttgagacatttgatgaccatataac |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2709826 |
atgccaaattacttgagacatttgatgaccatataac |
2709862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2714664 - 2714890
Alignment:
| Q |
1 |
aatacctggatctgaaggagtcttccattaagtggcttttactctttctcctgttatttggttggtgctaattatcatattttcaatgaaagcatttgac |
100 |
Q |
| |
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|||| |||||||||||||||| |||||| ||||| |||||||||||| |||||| |||||||| ||||||||||||||||| | ||||||| |||||| |
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| T |
2714664 |
aatagctggatctgaaggagttttccatgaagtgagttttactctttcacctgttttttggttgctgctaattatcatatttcctatgaaagtatttgat |
2714763 |
T |
|
| Q |
101 |
ggatgcttgccactctcccatattatgttgcctgtagtgttttcaagcaaaacaagatttccatcattttgaagttgagcagtgacattagaatttgatg |
200 |
Q |
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| T |
2714764 |
ggatgcttgatactctcccatattatgat------attgtcttcaagcaaaacaagatttccttcattttgaagttgagcagtgacattagaatttgagg |
2714857 |
T |
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| Q |
201 |
atgccaaattacttgagacatttgatgaccata |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2714858 |
atgccaaattacttgagacatttgatgaccata |
2714890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 2726402 - 2726473
Alignment:
| Q |
166 |
attttgaagttgagcagtgacattagaatttgatgatgccaaattacttgagacatttgatgaccatataac |
237 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2726402 |
attttgaagctgagcagtgacattagaatttgaggatgccaaattacttgagacatttgatgaccatataac |
2726473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 2747499 - 2747633
Alignment:
| Q |
1 |
aatacctggatctgaaggagtcttccattaagtggcttttactctttctcctgttatttggttggtgctaattatcatattttcaatgaaagcatttgac |
100 |
Q |
| |
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|||| ||||||| |||||||| |||||| ||||| ||||||| |||| |||||| ||||||| |||||||| |||||||| || ||| |||| || |
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| T |
2747499 |
aatagctggatcagaaggagttttccatgaagtgagttttactttttcccctgttctttggtttgtgctaatgctcatatttggaaggaatgcatcagat |
2747598 |
T |
|
| Q |
101 |
ggatgcttgccactctcccatattatgttgcctgt |
135 |
Q |
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||||| ||| ||||||||||||||| |||||||| |
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| T |
2747599 |
ggatgtttgaaactctcccatattatattgcctgt |
2747633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 2720630 - 2720759
Alignment:
| Q |
6 |
ctggatctgaaggagtcttccattaagtggcttttactctttctcctgttatttggttggtgctaattatcatattttcaatgaaagcatttgacggatg |
105 |
Q |
| |
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|||||||||||||||| ||||| ||||| ||||||| |||| |||||| ||||||||||||||||| |||||||| | || |||| || ||||| |
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| T |
2720630 |
ctggatctgaaggagttttccaagaagtgagttttactttttcccctgttttttggttggtgctaattgtcatatttaggaggactgcatcagatggatg |
2720729 |
T |
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| Q |
106 |
cttgccactctcccatattatgttgcctgt |
135 |
Q |
| |
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||| ||||||||||||||| |||||||| |
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| T |
2720730 |
tttgaaactctcccatattatcttgcctgt |
2720759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 2726015 - 2726149
Alignment:
| Q |
1 |
aatacctggatctgaaggagtcttccattaagtggcttttactctttctcctgttatttggttggtgctaattatcatattttcaatgaaagcatttgac |
100 |
Q |
| |
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|||| ||||||| ||||||| ||||| ||||| ||||||| |||| |||||| ||||||| |||||||||||||||||| | ||| |||| || |
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| T |
2726015 |
aatagctggatccaaaggagttttccaagaagtgtattttactttttcccctgttctttggtttgtgctaattatcatatttgggaggaatgcatcagat |
2726114 |
T |
|
| Q |
101 |
ggatgcttgccactctcccatattatgttgcctgt |
135 |
Q |
| |
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||||| ||| ||||||||||||||| |||||||| |
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| T |
2726115 |
ggatgtttgaaactctcccatattatattgcctgt |
2726149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 2734135 - 2734217
Alignment:
| Q |
133 |
tgtagtgttttcaagcaaaacaagatttccatcattttgaagttgagcagtgacattagaatttgatgatgccaaattacttg |
215 |
Q |
| |
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|||||||| || |||||||||||||||||| | |||||||| |||| ||||||| |||||||||| ||| |||| ||||||| |
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| T |
2734135 |
tgtagtgtctttaagcaaaacaagatttcctttattttgaaattgaagagtgacaatagaatttgacgattccaagttacttg |
2734217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 2749443 - 2749520
Alignment:
| Q |
166 |
attttgaagttgagcagtgacattagaatttgatgatgccaaattact------tgagacatttgatgaccatataac |
237 |
Q |
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|||||||| |||| || |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
2749443 |
attttgaaattgaacaatgacattaaaatttgaggatgccaaattacttgagagtgagacatttgatgaccatataac |
2749520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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