View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_79 (Length: 251)
Name: NF3114_low_79
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_79 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 8342901 - 8343041
Alignment:
| Q |
1 |
tattttgacaactactatttatttccatatttttgtatattaatatcaggacatggtacacaaggaaaagttcttgaaattgtgtcctgttcttttgtgt |
100 |
Q |
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| T |
8342901 |
tattttgacaactactatttatttccatatttttgtatattaatatcaggacatggtaaacaaggaaaagttcttgaaattgtgtcttgttcttttgtgt |
8343000 |
T |
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| Q |
101 |
agaacacgaaaagtcatctaagtatttgtctaattttcacc |
141 |
Q |
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| T |
8343001 |
agaacaagaaaagtcatctaagtatttgtctaattttcacc |
8343041 |
T |
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Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 8343443 - 8343534
Alignment:
| Q |
133 |
attttcaccttaaaatatagatttttcaatcacttgcttatagtgccaaaatctcagtatatgtagccaagctaagcaatttcaactttgtt |
224 |
Q |
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| T |
8343443 |
attttcaccttaaaatatagatttttcaatcacttgcttatagtgccaaaatctcagtatatgtagccaagctaagcaatttcaactttgtt |
8343534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 25661 - 25758
Alignment:
| Q |
127 |
tgtctaattttcaccttaaaatatagatttttcaatcacttgcttatagtgccaaaatctcagtatatgtagccaagctaagcaatttcaactttgttga |
226 |
Q |
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| T |
25661 |
tgtcttattctcaccttaaagtataaacttttcaataacttgcttatagtgcccacatctcagtatatg-----aagctaagccatatcaacttcgttga |
25755 |
T |
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