View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_low_8 (Length: 552)

Name: NF3114_low_8
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_low_8
NF3114_low_8
[»] chr4 (18 HSPs)
chr4 (1-534)||(51904674-51905223)
chr4 (415-534)||(5994926-5995045)
chr4 (413-534)||(27654478-27654599)
chr4 (410-534)||(37586524-37586648)
chr4 (453-534)||(51340022-51340103)
chr4 (421-524)||(5027464-5027566)
chr4 (421-510)||(3976415-3976504)
chr4 (413-534)||(24106705-24106826)
chr4 (429-525)||(26001447-26001543)
chr4 (430-501)||(50571882-50571953)
chr4 (413-498)||(56328679-56328764)
chr4 (450-534)||(32949589-32949673)
chr4 (450-509)||(34004830-34004889)
chr4 (461-496)||(51206092-51206127)
chr4 (430-483)||(20454558-20454611)
chr4 (430-483)||(50481654-50481707)
chr4 (450-526)||(3888642-3888718)
chr4 (469-521)||(43515288-43515340)
[»] chr2 (19 HSPs)
chr2 (413-534)||(19193561-19193682)
chr2 (429-534)||(42669788-42669893)
chr2 (450-534)||(19953433-19953517)
chr2 (461-534)||(18949253-18949326)
chr2 (413-534)||(43400134-43400255)
chr2 (423-534)||(31494219-31494328)
chr2 (413-517)||(20458914-20459016)
chr2 (421-529)||(37077969-37078077)
chr2 (471-534)||(4024748-4024811)
chr2 (450-534)||(6420513-6420595)
chr2 (423-500)||(8163552-8163629)
chr2 (430-495)||(12989209-12989274)
chr2 (415-480)||(17505921-17505986)
chr2 (430-483)||(36471947-36472000)
chr2 (430-495)||(45554585-45554650)
chr2 (413-534)||(19190631-19190754)
chr2 (430-496)||(3804602-3804669)
chr2 (431-495)||(9470100-9470164)
chr2 (410-446)||(35523381-35523417)
[»] chr8 (16 HSPs)
chr8 (421-534)||(45524934-45525047)
chr8 (410-534)||(24683569-24683693)
chr8 (450-528)||(28485445-28485523)
chr8 (459-524)||(9009010-9009075)
chr8 (450-534)||(37927531-37927615)
chr8 (455-531)||(41668592-41668668)
chr8 (422-527)||(24184377-24184482)
chr8 (461-524)||(27799274-27799337)
chr8 (450-523)||(9953738-9953811)
chr8 (461-534)||(42474010-42474083)
chr8 (423-534)||(11574089-11574200)
chr8 (410-524)||(32022911-32023025)
chr8 (413-522)||(45218587-45218694)
chr8 (430-495)||(9952854-9952919)
chr8 (430-495)||(32072115-32072180)
chr8 (429-481)||(38091388-38091440)
[»] chr6 (8 HSPs)
chr6 (421-531)||(25326840-25326950)
chr6 (421-531)||(26159375-26159485)
chr6 (450-531)||(26170952-26171033)
chr6 (413-528)||(29610301-29610416)
chr6 (413-534)||(12690253-12690374)
chr6 (413-534)||(31947265-31947386)
chr6 (431-495)||(34905355-34905419)
chr6 (418-534)||(6163577-6163693)
[»] chr7 (17 HSPs)
chr7 (422-534)||(2911771-2911883)
chr7 (461-534)||(46994421-46994494)
chr7 (413-531)||(23434697-23434814)
chr7 (413-534)||(4090037-4090156)
chr7 (320-408)||(6688283-6688369)
chr7 (475-534)||(24845488-24845547)
chr7 (441-503)||(33852559-33852621)
chr7 (452-505)||(32721014-32721067)
chr7 (475-534)||(44350218-44350277)
chr7 (450-519)||(17354600-17354669)
chr7 (431-495)||(7775019-7775083)
chr7 (431-495)||(22189958-22190022)
chr7 (430-488)||(19422938-19422996)
chr7 (458-499)||(24681643-24681684)
chr7 (429-534)||(39523592-39523697)
chr7 (430-495)||(44511033-44511098)
chr7 (450-518)||(29462076-29462144)
[»] chr5 (12 HSPs)
chr5 (410-532)||(10299883-10300005)
chr5 (453-534)||(43461426-43461507)
chr5 (422-534)||(20526764-20526876)
chr5 (421-525)||(1649559-1649662)
chr5 (413-528)||(32309481-32309596)
chr5 (450-529)||(7585024-7585103)
chr5 (475-534)||(25002064-25002123)
chr5 (493-534)||(41034488-41034529)
chr5 (475-534)||(36325501-36325559)
chr5 (430-488)||(17537206-17537264)
chr5 (423-501)||(42224682-42224760)
chr5 (431-483)||(43405412-43405464)
[»] chr1 (14 HSPs)
chr1 (410-528)||(18157036-18157154)
chr1 (421-534)||(28274795-28274908)
chr1 (410-534)||(18473647-18473771)
chr1 (413-534)||(1468443-1468562)
chr1 (413-525)||(21977188-21977300)
chr1 (457-528)||(5602624-5602695)
chr1 (413-523)||(14340990-14341100)
chr1 (413-525)||(40125906-40126018)
chr1 (475-534)||(11247833-11247892)
chr1 (421-534)||(18953223-18953335)
chr1 (450-527)||(21970343-21970420)
chr1 (450-526)||(15741874-15741950)
chr1 (473-529)||(2592965-2593021)
chr1 (429-473)||(31602076-31602120)
[»] scaffold0005 (1 HSPs)
scaffold0005 (413-529)||(296837-296953)
[»] chr3 (18 HSPs)
chr3 (413-527)||(214036-214149)
chr3 (431-528)||(10798341-10798438)
chr3 (429-534)||(22813330-22813435)
chr3 (413-529)||(49720065-49720181)
chr3 (410-528)||(7791826-7791944)
chr3 (413-534)||(7640653-7640774)
chr3 (450-527)||(44225900-44225977)
chr3 (471-534)||(34706640-34706703)
chr3 (453-534)||(10817375-10817457)
chr3 (437-534)||(44911663-44911760)
chr3 (461-529)||(9774214-9774282)
chr3 (415-481)||(42780673-42780739)
chr3 (457-529)||(8475199-8475271)
chr3 (430-493)||(28529271-28529334)
chr3 (475-534)||(46205590-46205649)
chr3 (429-534)||(38169051-38169156)
chr3 (430-495)||(5452157-5452222)
chr3 (475-523)||(53655476-53655524)
[»] scaffold0370 (2 HSPs)
scaffold0370 (101-141)||(11209-11249)
scaffold0370 (101-141)||(16499-16539)
[»] scaffold0155 (1 HSPs)
scaffold0155 (450-501)||(35632-35683)
[»] scaffold0147 (1 HSPs)
scaffold0147 (450-528)||(28334-28412)


Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 51905223 - 51904674
Alignment:
Q  1 attcatacaagaaagagaaaagaggcgtgttagctgagggcaagatctgatgatgatatgttagttgatcctacaataagacgtggtgcgcagggtatga 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51905223 attcatacaagaaagagaaaagaggcgtgtttgctgagggcaagatctgatgatgatatgttagttgatcctacaataagacgtggtgcgcagggtatga 51905124  T
Q  101 aattttcagcttttggagtgtataaaaggccaacatttttt--ctgtgtgtgtaatctcatgaaatcaaaagagaagactcttagaaacacatggaaaac 198  Q
    |||||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  51905123 aattttcagcttttggagggtataaaaggccaacgtttttttcctgtgtgtgtaatctcatgaaaccaaaagaggagactcttagaaacacatggaaaac 51905024  T
Q  199 acgagagtctgagaggtttgtatgcaacttgggtgaatcttgaaagatcaaaagaaaaaacatttaagggttgctgcattgttaggagagattctatagt 298  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51905023 acgagagtttgagaggtttgtatgcaacttgggtgaatcttgaaagatcaaaagaaaaaacatttaagggttgctgcattgttaggagagattctatagt 51904924  T
Q  299 tggaaaatattttctaaacaaagtgaaaattattaagtgattataagagggtgaatgagagaaatttttaggggatgttcttgaagagtattgggagcta 398  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51904923 tggaaaatactttgtaaacaaagtgaaaatttttaagtgattataagagggtaaatgagagaaatttttaggggatgttcttgaagagtattgggagcta 51904824  T
Q  399 aatttattggaagaaatgctaaggacactatctttt--------------caacactctctttgtcactcattctcttattagatgaaatcaatgtatga 484  Q
    ||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51904823 aatttattggaagaaatgctaaggacactatcttttcaactctatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatga 51904724  T
Q  485 cccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51904723 cccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 51904674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 415 - 534
Target Start/End: Complemental strand, 5995045 - 5994926
Alignment:
Q  415 tgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaa 514  Q
    ||||| ||||| | |||||||||||||||||||  |||||||||||||||| ||| |||  |||||||||| || |||||||||||||||| |||| |||    
T  5995045 tgctagggacattctcttttcaacactctctttaacactcattctcttattggataaaactaatgtatgactcaccactttaagtggaacccatttccaa 5994946  T
Q  515 agtgtgagacccaccatgat 534  Q
     |||||||||||||||||||    
T  5994945 tgtgtgagacccaccatgat 5994926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 413 - 534
Target Start/End: Original strand, 27654478 - 27654599
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||| ||||||| ||||||||||||||||| |  |||||||||||||||| ||| |||  |||||||| |||| |||||||||||||||| |||| |    
T  27654478 aatgctagggacactctcttttcaacactctctctaacactcattctcttattggataaaactaatgtatgtcccaccactttaagtggaacccatttcc 27654577  T
Q  513 aaagtgtgagacccaccatgat 534  Q
    || |||||| | ||||| ||||    
T  27654578 aacgtgtgaaatccaccttgat 27654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 410 - 534
Target Start/End: Complemental strand, 37586648 - 37586524
Alignment:
Q  410 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 509  Q
    |||||||||||||||||| ||||||||||||||| ||   |||||| | | | ||| | | ||| |||| | ||||||| ||||||||||||| || |||    
T  37586648 agaaatgctaaggacactctcttttcaacactctattcaacactcactttttaattggcttaaaccaatatgtgacccaccactttaagtggatcccatt 37586549  T
Q  510 tacaaagtgtgagacccaccatgat 534  Q
    | |||||||||||||||||||||||    
T  37586548 ttcaaagtgtgagacccaccatgat 37586524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 534
Target Start/End: Complemental strand, 51340103 - 51340022
Alignment:
Q  453 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    ||||||| ||||| ||||||| ||||||| |||||| | ||||||||| ||||||||| ||||||||||||||||| |||||    
T  51340103 tcattcttttatttgatgaaaccaatgtacgacccaccgctttaagtgaaacctatttccaaagtgtgagacccactatgat 51340022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 421 - 524
Target Start/End: Complemental strand, 5027566 - 5027464
Alignment:
Q  421 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 520  Q
    ||||||| |||||| ||||||||||||  |||||||| | ||||| |||| ||||||| |||||||||||||||||||| ||| | |||| |||| ||||    
T  5027566 ggacactctcttttgaacactctctttaacactcatttt-ttattggatgtaatcaatatatgacccatcactttaagttgaatcgattttcaaaatgtg 5027468  T
Q  521 agac 524  Q
    ||||    
T  5027467 agac 5027464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 510
Target Start/End: Complemental strand, 3976504 - 3976415
Alignment:
Q  421 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctattt 510  Q
    ||||||| | ||||||||||||||||   |||||||||||||||| ||| ||| |||||||||| ||| || ||||||||||||| ||||    
T  3976504 ggacactctattttcaacactctcttcaacactcattctcttatttgataaaaccaatgtatgatccaccattttaagtggaacccattt 3976415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 534
Target Start/End: Complemental strand, 24106826 - 24106705
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    |||||||| |||||| ||||||||||||||||| |  ||| || ||||||||| |||||||  |||| ||| ||||| ||||||||||||||  ||||      
T  24106826 aatgctaatgacactctcttttcaacactctctctaacacccactctcttattggatgaaactaatgcatgtcccatgactttaagtggaactcatttct 24106727  T
Q  513 aaagtgtgagacccaccatgat 534  Q
    || |||| ||||||||| ||||    
T  24106726 aatgtgtaagacccaccttgat 24106705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 26001447 - 26001543
Alignment:
Q  429 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacc 525  Q
    ||||||||||||||||||   || ||||||| ||||| ||| |||  ||||||||| |||||||||||| || |||  |||| ||||||||||||||    
T  26001447 tcttttcaacactctcttcaacattcattcttttattggataaaagtaatgtatgatccatcactttaaatgaaactcattttcaaagtgtgagacc 26001543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 501
Target Start/End: Original strand, 50571882 - 50571953
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtgg 501  Q
    |||||||||||||||| |  |||| | ||| ||||||||||||||||||||||| ||||||| |||| ||||    
T  50571882 cttttcaacactctctctagcacttactcttttattagatgaaatcaatgtatgccccatcaatttatgtgg 50571953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 56328679 - 56328764
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaag 498  Q
    |||||||| ||||||   |||||||||||||||||  |||||||||||||||  ||||||| |||  ||||||||  |||||||||    
T  56328679 aatgctaatgacacttgtttttcaacactctctttaacactcattctcttatcggatgaaaccaacctatgacccgacactttaag 56328764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 534
Target Start/End: Original strand, 32949589 - 32949673
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||||| | ||||| ||| |||  ||||||||| ||| |||||||| ||||||  |||| |||||||| ||||||||||||||    
T  32949589 cactcatttttttattggataaaactaatgtatgatccaccactttaactggaactaatttccaaagtgtaagacccaccatgat 32949673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 509
Target Start/End: Complemental strand, 34004889 - 34004830
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 509  Q
    |||| ||||| |||||||||||||  ||||||||||||| |||||| |||| ||||||||    
T  34004889 cacttattcttttattagatgaaagtaatgtatgacccaccacttttagtgaaacctatt 34004830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 496
Target Start/End: Original strand, 51206092 - 51206127
Alignment:
Q  461 ttattagatgaaatcaatgtatgacccatcacttta 496  Q
    ||||||||||||||||||||||| ||||||||||||    
T  51206092 ttattagatgaaatcaatgtatgtcccatcacttta 51206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Original strand, 20454558 - 20454611
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatg 483  Q
    |||||||||||||||| |  |||||| ||| ||||||||| |||||||||||||    
T  20454558 cttttcaacactctctctagcactcactcttttattagataaaatcaatgtatg 20454611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Complemental strand, 50481707 - 50481654
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatg 483  Q
    |||||||||||||| ||| ||||||| ||| ||||| ||||||||||| |||||    
T  50481707 cttttcaacactctttttctcactcactcttttattggatgaaatcaaagtatg 50481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 526
Target Start/End: Original strand, 3888642 - 3888718
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagaccc 526  Q
    |||||| ||||||||| ||  |||| |||||||| ||||  | ||||||||||||| |||| |||| ||||||||||    
T  3888642 cactcactctcttattggagaaaattaatgtatgtcccactaatttaagtggaacccatttccaaattgtgagaccc 3888718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 521
Target Start/End: Complemental strand, 43515340 - 43515288
Alignment:
Q  469 tgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtga 521  Q
    |||||| |||||||| |||| ||||||||||| ||| ||||| ||||||||||    
T  43515340 tgaaattaatgtatgtcccaccactttaagtgaaacttatttccaaagtgtga 43515288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 413 - 534
Target Start/End: Complemental strand, 19193682 - 19193561
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    |||||||  |||||| ||||||||||||||||||   |||||||||||||||| ||| ||| |||||||||||||| ||||||||||| ||||||||| |    
T  19193682 aatgctagagacactctcttttcaacactctcttgaacactcattctcttattggataaaaccaatgtatgacccaccactttaagtgaaacctatttcc 19193583  T
Q  513 aaagtgtgagacccaccatgat 534  Q
    ||||| ||||||||||||||||    
T  19193582 aaagtatgagacccaccatgat 19193561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 429 - 534
Target Start/End: Complemental strand, 42669893 - 42669788
Alignment:
Q  429 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 528  Q
    ||||||||||||||||||   |||||||| ||||||| |||  ||||||||||||||||| ||||||||||| |||| |||| |||||||||| ||||||    
T  42669893 tcttttcaacactctcttcaacactcattttcttattggatagaatcaatgtatgacccaccactttaagtgaaacccatttccaaagtgtgaaacccac 42669794  T
Q  529 catgat 534  Q
    ||||||    
T  42669793 catgat 42669788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 534
Target Start/End: Original strand, 19953433 - 19953517
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||| ||||||||||||| ||| |||||    
T  19953433 cactcattcttttattggatgaaaccaatgtatgacccaccactttaagtggaacccatttccaaagtgtgagactcactatgat 19953517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 461 - 534
Target Start/End: Complemental strand, 18949326 - 18949253
Alignment:
Q  461 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    ||||| ||| ||| |||||||||| |||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  18949326 ttattggataaaaccaatgtatgatccatcactttaagtggaacccatttttaaagtgtgagacccaccatgat 18949253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 413 - 534
Target Start/End: Original strand, 43400134 - 43400255
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||| ||| ||| ||||||||||||||||| |  |||||| | ||||||| |||||||  | |||||| |||| ||||||||||||||||||||  |    
T  43400134 aatgctatggatactctcttttcaacactctctctaacactcactttcttattggatgaaactagtgtatgtcccaccactttaagtggaacctattatc 43400233  T
Q  513 aaagtgtgagacccaccatgat 534  Q
    || |||||| ||||||| ||||    
T  43400234 aatgtgtgaaacccaccttgat 43400255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 534
Target Start/End: Original strand, 31494219 - 31494328
Alignment:
Q  423 acactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgag 522  Q
    ||||| |||||||||||||||||    |||||| ||||||||| |||||||  |||||||| ||||  ||||||||||||||| |||| ||| |||||||    
T  31494219 acactctcttttcaacactctctaa--cactcactctcttattggatgaaaataatgtatgtcccactactttaagtggaacccatttccaatgtgtgag 31494316  T
Q  523 acccaccatgat 534  Q
    ||||||| ||||    
T  31494317 acccaccttgat 31494328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 517
Target Start/End: Original strand, 20458914 - 20459016
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||||||||||| ||||  ||||||||||||   |||||||||||||||| ||||||| || ||| |||| || |||||| ||||||||| |||| |    
T  20458914 aatgctaaggacactctctt--caacactctcttaaacactcattctcttattggatgaaaccattgtttgactcaccactttgagtggaacccattttc 20459011  T
Q  513 aaagt 517  Q
    |||||    
T  20459012 aaagt 20459016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 529
Target Start/End: Original strand, 37077969 - 37078077
Alignment:
Q  421 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 520  Q
    ||||||| ||||||||||||| ||| |  ||| || ||||||||| |||| ||| | |||||| |||| |||||||||||||| | |||| ||| |||||    
T  37077969 ggacactctcttttcaacactttctctaacacacactctcttattggatgtaattagtgtatgtcccaccactttaagtggaatccatttccaatgtgtg 37078068  T
Q  521 agacccacc 529  Q
    |||||||||    
T  37078069 agacccacc 37078077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 534
Target Start/End: Original strand, 4024748 - 4024811
Alignment:
Q  471 aaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||||| | |||||||  ||||||||||||||| |||| |||||||||||||||||||||||    
T  4024748 aaatcaatatgtgacccacaactttaagtggaacccattttcaaagtgtgagacccaccatgat 4024811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 534
Target Start/End: Complemental strand, 6420595 - 6420513
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||||| | ||||| | |||||| ||||||||||||| || |||||||| ||||||||| |||  ||||||||||||||||||    
T  6420595 cactcatttttttattgggtgaaattaatgtatgacccaccattttaagtgaaacctatttccaa--tgtgagacccaccatgat 6420513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 500
Target Start/End: Complemental strand, 8163629 - 8163552
Alignment:
Q  423 acactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtg 500  Q
    |||||||||||| |||||||| ||   |||||||| | ||||| ||| |||||||||||||||||| |||||||||||    
T  8163629 acactatctttttaacactcttttcaacactcatttttttattggataaaatcaatgtatgacccaccactttaagtg 8163552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 495
Target Start/End: Original strand, 12989209 - 12989274
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    |||||||||||||||||| ||||||| ||| | ||| ||||||||||||||||| |||| ||||||    
T  12989209 cttttcaacactctctttctcactcactctttcattggatgaaatcaatgtatgtcccaccacttt 12989274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 480
Target Start/End: Complemental strand, 17505986 - 17505921
Alignment:
Q  415 tgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgt 480  Q
    ||||||| |||||||||||||||||||||||    |||||||||||| |||  |||||||||||||    
T  17505986 tgctaagaacactatcttttcaacactctctcaaacactcattctctaattgaatgaaatcaatgt 17505921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 483
Target Start/End: Complemental strand, 36472000 - 36471947
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatg 483  Q
    |||||||||||||||| || |||||| ||||||||| ||||||||||| |||||    
T  36472000 cttttcaacactctctctgacactcaatctcttattggatgaaatcaaagtatg 36471947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 495
Target Start/End: Original strand, 45554585 - 45554650
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    |||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||||    
T  45554585 cttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccaccacttt 45554650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 534
Target Start/End: Original strand, 19190631 - 19190754
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaat--gtatgacccatcactttaagtggaacctattt 510  Q
    |||||||  |||||| |||||| | |||||||| |  |||||||| ||||||| |||||||| |||  |||||  ||| |||||||||||||| | ||||    
T  19190631 aatgctagagacactctcttttaagcactctctctaacactcattttcttattggatgaaattaatatgtatgttccaccactttaagtggaatccattt 19190730  T
Q  511 acaaagtgtgagacccaccatgat 534  Q
      ||||||| ||||||||| ||||    
T  19190731 ttaaagtgttagacccaccttgat 19190754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 496
Target Start/End: Original strand, 3804602 - 3804669
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatg-acccatcacttta 496  Q
    ||||||||||||||||||  || ||| ||| ||||| |||||||||||||||||  ||||||||||||    
T  3804602 cttttcaacactctctttaacattcactcttttattggatgaaatcaatgtatgtccccatcacttta 3804669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 9470100 - 9470164
Alignment:
Q  431 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    |||||||| |||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||||    
T  9470100 ttttcaacgctctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccacttt 9470164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 446
Target Start/End: Original strand, 35523381 - 35523417
Alignment:
Q  410 agaaatgctaaggacactatcttttcaacactctctt 446  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  35523381 agaaatgctagggacactctcttttcaacactctctt 35523417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 421 - 534
Target Start/End: Complemental strand, 45525047 - 45524934
Alignment:
Q  421 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 520  Q
    ||||||| ||||||||||||||||||   |||||||| ||||||| ||| |||||||||||||||||| |||||| ||||||||| |||| |||||||||    
T  45525047 ggacactctcttttcaacactctcttcaacactcattttcttattggataaaatcaatgtatgacccaccactttgagtggaacccatttccaaagtgtg 45524948  T
Q  521 agacccaccatgat 534  Q
    | ||||||||||||    
T  45524947 aaacccaccatgat 45524934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 410 - 534
Target Start/End: Original strand, 24683569 - 24683693
Alignment:
Q  410 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 509  Q
    |||||||||||||||||| |||||||||||||||||||   ||||| | ||| |||   | ||| |||||| ||||||| |||||||||||||||| |||    
T  24683569 agaaatgctaaggacactctcttttcaacactctctttaatactcactttctaattgacttaaaccaatgtgtgacccaccactttaagtggaacccatt 24683668  T
Q  510 tacaaagtgtgagacccaccatgat 534  Q
    | |||| ||||||||||| ||||||    
T  24683669 tccaaaatgtgagacccatcatgat 24683693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 450 - 528
Target Start/End: Complemental strand, 28485523 - 28485445
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 528  Q
    |||| ||||||||||| |||||||| |||||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  28485523 cacttattctcttattggatgaaattaatgtatgtcccaccactttaagtggaacccatttccaaagtgtgagacccac 28485445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 524
Target Start/End: Complemental strand, 9009075 - 9009010
Alignment:
Q  459 tcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagac 524  Q
    ||||||| | |||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||    
T  9009075 tcttatttggtgaaattaatgtatgtcccatcactttaagtggaacccattttcaaagtgtgagac 9009010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 534
Target Start/End: Complemental strand, 37927615 - 37927531
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    ||||||||||||| || ||||||| ||||||||||| ||||||||||||| | | |||||| |||| |||||||| ||| |||||    
T  37927615 cactcattctcttgttggatgaaaccaatgtatgactcatcactttaagtagtatctatttccaaaatgtgagactcactatgat 37927531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 455 - 531
Target Start/End: Original strand, 41668592 - 41668668
Alignment:
Q  455 attctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccat 531  Q
    ||||| ||||||||||||||||||||||||   ||||||||||||| |||  ||||| ||||||||||| |||||||    
T  41668592 attcttttattagatgaaatcaatgtatgatttatcactttaagtgaaactcatttataaagtgtgagatccaccat 41668668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 527
Target Start/End: Original strand, 24184377 - 24184482
Alignment:
Q  422 gacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtga 521  Q
    |||||| ||||||||||||||| |||   || || ||| ||||| || ||||| |||| ||| ||||||||||||| ||||| | |||| ||||||||||    
T  24184377 gacactctcttttcaacactctttttaatacgcactcttttattggaagaaattaatgcatgtcccatcactttaaatggaatccattttcaaagtgtga 24184476  T
Q  522 gaccca 527  Q
    ||||||    
T  24184477 gaccca 24184482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 524
Target Start/End: Complemental strand, 27799337 - 27799274
Alignment:
Q  461 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagac 524  Q
    ||||| |||||||  |||||||| |||| ||||||||||||||||||||| ||| |||||||||    
T  27799337 ttatttgatgaaactaatgtatgtcccaccactttaagtggaacctatttccaatgtgtgagac 27799274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 523
Target Start/End: Complemental strand, 9953811 - 9953738
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgaga 523  Q
    |||||| ||||||||  |||||||| ||||| || |||| |||||||||||||||  |||| ||||||||||||    
T  9953811 cactcactctcttatgggatgaaattaatgtgtgtcccaccactttaagtggaactcatttccaaagtgtgaga 9953738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 534
Target Start/End: Original strand, 42474010 - 42474083
Alignment:
Q  461 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    ||||| ||| |||| ||||| ||||||| ||||||||||||||   |||| ||||||||||||||||| |||||    
T  42474010 ttattggataaaattaatgtttgacccaccactttaagtggaattcattttcaaagtgtgagacccactatgat 42474083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 534
Target Start/End: Complemental strand, 11574200 - 11574089
Alignment:
Q  423 acactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgag 522  Q
    ||||| |||||| ||||||||||||  |||||| ||||||| |||  ||||  | |||||| ||||  | |||||||| |||| |||| ||| |||||||    
T  11574200 acactctcttttgaacactctctttaacactcactctcttaatagccgaaactagtgtatgtcccactattttaagtgaaaccaattttcaatgtgtgag 11574101  T
Q  523 acccaccatgat 534  Q
    ||||||| ||||    
T  11574100 acccaccttgat 11574089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 524
Target Start/End: Complemental strand, 32023025 - 32022911
Alignment:
Q  410 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 509  Q
    ||||||| ||||||||||   |||| ||||||||||||  || ||| ||| |||||  || |||| |||||||| | || ||||| |||| |||||||||    
T  32023025 agaaatgttaaggacactcatttttaaacactctctttaacattcaatcttttattgaataaaattaatgtatgcctcaccacttcaagtagaacctatt 32022926  T
Q  510 tacaaagtgtgagac 524  Q
    |  ||||||||||||    
T  32022925 tttaaagtgtgagac 32022911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 522
Target Start/End: Complemental strand, 45218694 - 45218587
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||| ||||||| ||||||  |||||||||    |||||  ||| ||||| |||||||||||||  || |||| |||||||||||||||| |||| |    
T  45218694 aatgctagggacactctcttttatacactctctaa--cactcgctcttttattggatgaaatcaatgcgtgtcccaccactttaagtggaacccatttcc 45218597  T
Q  513 aaagtgtgag 522  Q
    ||| ||||||    
T  45218596 aaaatgtgag 45218587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 495
Target Start/End: Complemental strand, 9952919 - 9952854
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    |||||||||||||||| |  |||||||| | ||||| ||||||||||||| ||| |||| ||||||    
T  9952919 cttttcaacactctctctagcactcatttttttattggatgaaatcaatgcatgtcccaccacttt 9952854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 495
Target Start/End: Original strand, 32072115 - 32072180
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    |||||||||||||||| |  |||||| ||| ||||| |||||||| |||||||| |||| ||||||    
T  32072115 cttttcaacactctctctagcactcactcttttattggatgaaatgaatgtatgtcccaccacttt 32072180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 38091388 - 38091440
Alignment:
Q  429 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgta 481  Q
    ||||||||||||||||||   |||||||||||||||| ||| ||| |||||||    
T  38091388 tcttttcaacactctcttgaacactcattctcttattggataaaaccaatgta 38091440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 421 - 531
Target Start/End: Original strand, 25326840 - 25326950
Alignment:
Q  421 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 520  Q
    ||||||| ||||||||||||||||||   |||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||| |||| |||||||      
T  25326840 ggacactctcttttcaacactctcttcaacactcattttcttattggataaaatcaatgtatgacccaccactttaagtggaacccatttccaaagtgca 25326939  T
Q  521 agacccaccat 531  Q
    | |||||||||    
T  25326940 aaacccaccat 25326950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 421 - 531
Target Start/End: Original strand, 26159375 - 26159485
Alignment:
Q  421 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 520  Q
    ||||||| ||||||||||||||||||   |||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||| |||| |||||||      
T  26159375 ggacactctcttttcaacactctcttcaacactcattttcttattggataaaatcaatgtatgacccaccactttaagtggaacccatttccaaagtgca 26159474  T
Q  521 agacccaccat 531  Q
    | |||||||||    
T  26159475 aaacccaccat 26159485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 450 - 531
Target Start/End: Complemental strand, 26171033 - 26170952
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccat 531  Q
    |||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||||    
T  26171033 cactcattttcttattggataaaatcaatgtatgacccaccactttaagtggaacccatttccaaagtgtgaaacccaccat 26170952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 413 - 528
Target Start/End: Complemental strand, 29610416 - 29610301
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    |||||||| |||||| |||||||||||||||||    |||||| |  |||||||| | |||| |||||||| |||| |||||||||||||||| ||||      
T  29610416 aatgctaatgacactctcttttcaacactctctcaaacactcacttgcttattagtttaaatgaatgtatgtcccaccactttaagtggaaccaatttct 29610317  T
Q  513 aaagtgtgagacccac 528  Q
    || |||||||||||||    
T  29610316 aatgtgtgagacccac 29610301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 534
Target Start/End: Original strand, 12690253 - 12690374
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||| ||||||| | |||| |||||||||| |  ||||   ||| ||||| |||||||| |||| ||| | || |||||||||||||| |||||| |    
T  12690253 aatgctagggacactctattttaaacactctctctaacacttgctcttttattggatgaaattaatgcatgtctcaccactttaagtggaatctatttcc 12690352  T
Q  513 aaagtgtgagacccaccatgat 534  Q
    ||||||||||||||||| ||||    
T  12690353 aaagtgtgagacccaccttgat 12690374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 534
Target Start/End: Complemental strand, 31947386 - 31947265
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||||||||||||||||||||||||| |||| | |  ||||||||||||| |||||||  ||||||| || || || ||||| ||| ||  |||| |    
T  31947386 aatgctaaggacactatcttttcaacactttcttcgacgttcattctcttattggatgaaacaaatgtataactcaccattttaaatggtactcattttc 31947287  T
Q  513 aaagtgtgagacccaccatgat 534  Q
    ||||| |||| |||| ||||||    
T  31947286 aaagtatgaggcccatcatgat 31947265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 34905355 - 34905419
Alignment:
Q  431 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    ||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||||    
T  34905355 ttttcaacactctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccacttt 34905419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 534
Target Start/End: Complemental strand, 6163693 - 6163577
Alignment:
Q  418 taaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagt 517  Q
    |||||||||| ||||||||| ||| | ||   |||||||| | | ||| | | ||| |||||| ||||||| |||||||||| ||||  |||| ||||||    
T  6163693 taaggacactctcttttcaagacttttttctacactcattttttaattggcttaaaccaatgtttgacccaccactttaagtagaactcatttccaaagt 6163594  T
Q  518 gtgagacccaccatgat 534  Q
    ||||||| ||| |||||    
T  6163593 gtgagacgcactatgat 6163577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 422 - 534
Target Start/End: Original strand, 2911771 - 2911883
Alignment:
Q  422 gacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtga 521  Q
    |||||| ||||||||||||| ||||   ||||||||||||||||  ||  ||| |||||||||| ||||||||||||||||||||||||  |||||||||    
T  2911771 gacactctcttttcaacactatcttcaacactcattctcttattgaatataattaatgtatgactcatcactttaagtggaacctatttctaaagtgtga 2911870  T
Q  522 gacccaccatgat 534  Q
    || ||||||||||    
T  2911871 gatccaccatgat 2911883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 461 - 534
Target Start/End: Complemental strand, 46994494 - 46994421
Alignment:
Q  461 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||||||||||||||||||||||||| |||||||||||  | | |||| |||||||||||||||||||||||    
T  46994494 ttattagatgaaatcaatgtatgacccaccactttaagtgatatccatttccaaagtgtgagacccaccatgat 46994421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 413 - 531
Target Start/End: Original strand, 23434697 - 23434814
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||| |||||||   ||||||||||||||||   |||||||||||||||| ||| ||| |||||||||| ||| |||||||||| ||||  ||||      
T  23434697 aatgctagggacactcctttttcaacactctcttcaacactcattctcttattggataaaaccaatgtatgatccaccactttaagt-gaacacatttct 23434795  T
Q  513 aaagtgtgagacccaccat 531  Q
    |||||||||||||||||||    
T  23434796 aaagtgtgagacccaccat 23434814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 413 - 534
Target Start/End: Complemental strand, 4090156 - 4090037
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    |||||||||| || | | ||||||||| |||||||  |||| ||| | ||||| |||||||||||| ||||||||||||||||  |||| ||| ||||      
T  4090156 aatgctaagggcattcttttttcaacattctctttaacacttatttttttattggatgaaatcaatctatgacccatcacttt--gtggtacccatttct 4090059  T
Q  513 aaagtgtgagacccaccatgat 534  Q
    |||||||||||| |||||||||    
T  4090058 aaagtgtgagactcaccatgat 4090037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 408
Target Start/End: Complemental strand, 6688369 - 6688283
Alignment:
Q  320 agtgaaaattattaagtgattataagagggtgaatgagagaaatttttaggggatgttcttgaagagtattgggagctaaatttattgg 408  Q
    |||||||||  || || |||||||||| ||| ||||||||||||||  |||||||||||||| ||| ||||| ||||||||||||||||    
T  6688369 agtgaaaatctttgagcgattataagatggtaaatgagagaaattt--aggggatgttcttggagaatattgagagctaaatttattgg 6688283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 534
Target Start/End: Complemental strand, 24845547 - 24845488
Alignment:
Q  475 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||| ||||||| |||||||||||||||| |||| ||||||||||||| |||||||||    
T  24845547 caatgtgtgacccaccactttaagtggaacccatttccaaagtgtgagactcaccatgat 24845488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 503
Target Start/End: Complemental strand, 33852621 - 33852559
Alignment:
Q  441 tctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaa 503  Q
    |||||||  ||||||||||||||||||||||||| | |||||| |||| ||||||||||||||    
T  33852621 tctctttaacactcattctcttattagatgaaattagtgtatgtcccaccactttaagtggaa 33852559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 32721067 - 32721014
Alignment:
Q  452 ctcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacc 505  Q
    |||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||    
T  32721067 ctcattcttttattggataaaatcaatgtatgacccatcaatttaagtggaacc 32721014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 534
Target Start/End: Original strand, 44350218 - 44350277
Alignment:
Q  475 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||| ||||||| || ||||||||||| | |||| |||||||||||||||||||||||    
T  44350218 caatgtgtgacccaccattttaagtggaatccatttccaaagtgtgagacccaccatgat 44350277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 519
Target Start/End: Complemental strand, 17354669 - 17354600
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgt 519  Q
    |||||||||| ||||| ||||||||||||||||| |||| ||||||| ||||   |||||| ||||||||    
T  17354669 cactcattcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttctatttccaaagtgt 17354600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 7775019 - 7775083
Alignment:
Q  431 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    ||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||||    
T  7775019 ttttcaacactctctatagcactcactcttttattggatgaaatcaatgtatgtcccaccacttt 7775083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 22189958 - 22190022
Alignment:
Q  431 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    ||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||||    
T  22189958 ttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatggcccaccacttt 22190022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 488
Target Start/End: Complemental strand, 19422996 - 19422938
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgaccca 488  Q
    |||||||||||||||| | ||||||| ||| | ||| ||||||||||||||||| ||||    
T  19422996 cttttcaacactctctctatcactcactctttcattggatgaaatcaatgtatgtccca 19422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 499
Target Start/End: Original strand, 24681643 - 24681684
Alignment:
Q  458 ctcttattagatgaaatcaatgtatgacccatcactttaagt 499  Q
    |||| |||||||||||| |||||||| |||||||||||||||    
T  24681643 ctctcattagatgaaattaatgtatgtcccatcactttaagt 24681684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 534
Target Start/End: Original strand, 39523592 - 39523697
Alignment:
Q  429 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 528  Q
    ||||||||||||||| | |  |||||||||| ||||| |||||||  |  ||||| | || |||||||||||||||| |||| |||  ||||||| ||||    
T  39523592 tcttttcaacactctgtctaacactcattcttttattggatgaaactagggtatgtctcaccactttaagtggaacccatttccaatatgtgagatccac 39523691  T
Q  529 catgat 534  Q
    | ||||    
T  39523692 cttgat 39523697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 495
Target Start/End: Complemental strand, 44511098 - 44511033
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    |||||||||||||||| |  |||||| | | ||||| ||||||||||||||||| | |||||||||    
T  44511098 cttttcaacactctctctagcactcacttttttattggatgaaatcaatgtatgtctcatcacttt 44511033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 518
Target Start/End: Complemental strand, 29462144 - 29462076
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtg 518  Q
    |||||||||| |||||  || ||||||||||||||| ||  ||||||||||||||  |||| |||||||    
T  29462144 cactcattcttttattgaataaaatcaatgtatgactcactactttaagtggaacacatttccaaagtg 29462076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 410 - 532
Target Start/End: Original strand, 10299883 - 10300005
Alignment:
Q  410 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 509  Q
    |||||||||| ||| ||| ||||||||||||||||||   |||||||||||||||| ||||||  ||||| |||||||| |||||| ||||| ||| |||    
T  10299883 agaaatgctagggatactctcttttcaacactctcttcaacactcattctcttattggatgaacccaatgcatgacccaccacttttagtgggacccatt 10299982  T
Q  510 tacaaagtgtgagacccaccatg 532  Q
    | |||||||| ||| ||||||||    
T  10299983 tccaaagtgtaagatccaccatg 10300005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 534
Target Start/End: Complemental strand, 43461507 - 43461426
Alignment:
Q  453 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    ||||||| | ||| ||||||  ||||||||||||||||||||| ||||||||| || | |||||||||||||||||||||||    
T  43461507 tcattctgtcattggatgaatgcaatgtatgacccatcacttttagtggaacccatattcaaagtgtgagacccaccatgat 43461426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 534
Target Start/End: Original strand, 20526764 - 20526876
Alignment:
Q  422 gacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtga 521  Q
    |||||| ||||||||||||| |||||  |||| |||||||| || ||||||||||||  |||||||||||||||  ||| |||| |||| |||||| |||    
T  20526764 gacactctcttttcaacactttctttaacacttattctcttgtttgatgaaatcaatacatgacccatcacttttcgtgaaacccattttcaaagtttga 20526863  T
Q  522 gacccaccatgat 534  Q
     ||||| ||||||    
T  20526864 aacccaacatgat 20526876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 525
Target Start/End: Original strand, 1649559 - 1649662
Alignment:
Q  421 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 520  Q
    ||||||| ||||||||||||||||| |  |||||| | ||||||| |||||||| ||||||||  | | |||||||||||||||| ||||  ||||||||    
T  1649559 ggacactctcttttcaacactctctctaacactcactatcttattggatgaaattaatgtatgctctaccactttaagtggaacc-atttttaaagtgtg 1649657  T
Q  521 agacc 525  Q
    |||||    
T  1649658 agacc 1649662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 32309481 - 32309596
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    |||||||  |||||| ||||||||||| ||||| |  |||||| ||||||||| ||| |||| |||||||| || | ||||| ||||| |||| |||| |    
T  32309481 aatgctagagacactctcttttcaacattctctctagcactcactctcttattggataaaattaatgtatgtccgaccacttcaagtgaaacccattttc 32309580  T
Q  513 aaagtgtgagacccac 528  Q
    ||||||||||| ||||    
T  32309581 aaagtgtgagatccac 32309596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 529
Target Start/End: Original strand, 7585024 - 7585103
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 529  Q
    |||||||||||||||| |||||||  | |||||| || ||||||||||||| |||| |||| ||| ||||||||| ||||    
T  7585024 cactcattctcttattggatgaaactagtgtatgtcctatcactttaagtgaaacccatttccaatgtgtgagactcacc 7585103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 534
Target Start/End: Complemental strand, 25002123 - 25002064
Alignment:
Q  475 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||| ||||||| ||||||||||||| || |||| ||||||||||||||||| |||||    
T  25002123 caatgtgtgacccaccactttaagtggagcccatttccaaagtgtgagacccactatgat 25002064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 493 - 534
Target Start/End: Complemental strand, 41034529 - 41034488
Alignment:
Q  493 tttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  41034529 tttaagtggaacccatttccaaagtgtgagacccaccatgat 41034488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 534
Target Start/End: Original strand, 36325501 - 36325559
Alignment:
Q  475 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||| ||||||| |||||||||||||||| ||||  ||||||| ||||||||||||||    
T  36325501 caatgtgtgacccaccactttaagtggaacccattt-taaagtgtaagacccaccatgat 36325559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 488
Target Start/End: Complemental strand, 17537264 - 17537206
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgaccca 488  Q
    |||||||||||||||| | ||||||| ||| ||||| ||| ||||||||||||| ||||    
T  17537264 cttttcaacactctctctatcactcactcttttatttgatcaaatcaatgtatgtccca 17537206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 501
Target Start/End: Complemental strand, 42224760 - 42224682
Alignment:
Q  423 acactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtgg 501  Q
    ||||| |||||| | |||||||| |  |||||| ||| ||||||| ||||||||||||||| |||| ||||||| ||||    
T  42224760 acactctcttttgagcactctctctagcactcactcttttattaggtgaaatcaatgtatgtcccaccactttatgtgg 42224682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 483
Target Start/End: Original strand, 43405412 - 43405464
Alignment:
Q  431 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatg 483  Q
    |||| ||||| |||||||||||||| ||| |||||  ||||||||||||||||    
T  43405412 tttttaacacgctctttgtcactcactcttttattgaatgaaatcaatgtatg 43405464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 410 - 528
Target Start/End: Original strand, 18157036 - 18157154
Alignment:
Q  410 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 509  Q
    |||||||||| ||||||| ||||||||||||||||| |  ||| || | | ||||| |||||||| |||||||| |||| |||||||||||||||  |||    
T  18157036 agaaatgctagggacactctcttttcaacactctctctaacacccacttttttattggatgaaattaatgtatgtcccaccactttaagtggaacacatt 18157135  T
Q  510 tacaaagtgtgagacccac 528  Q
    | |||||||||||||||||    
T  18157136 tccaaagtgtgagacccac 18157154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 421 - 534
Target Start/End: Original strand, 28274795 - 28274908
Alignment:
Q  421 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 520  Q
    ||||||| ||||||||||||||||| |  |||||| ||||||||| |||||||  | |||||| |||||||| |||||||||||| |||| ||| |||||    
T  28274795 ggacactctcttttcaacactctctctaacactcactctcttattggatgaaactagtgtatgtcccatcaccttaagtggaacccatttccaatgtgtg 28274894  T
Q  521 agacccaccatgat 534  Q
    ||||||||| ||||    
T  28274895 agacccaccttgat 28274908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 410 - 534
Target Start/End: Original strand, 18473647 - 18473771
Alignment:
Q  410 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 509  Q
    ||||||||||  |||||| ||||||||||||||||||   |||||| | ||| |||   | ||| |||| | ||||||  |||||||||||||||| |||    
T  18473647 agaaatgctagagacactctcttttcaacactctcttcaacactcactttctaattgacttaaaccaatatgtgacccgccactttaagtggaacccatt 18473746  T
Q  510 tacaaagtgtgagacccaccatgat 534  Q
    | |||||||||||||||||||||||    
T  18473747 ttcaaagtgtgagacccaccatgat 18473771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 413 - 534
Target Start/End: Original strand, 1468443 - 1468562
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||| ||||||| || ||||||||||||||    |||||| ||||||||| ||| |||  | ||||||   |||||||||||||||||||||||| |    
T  1468443 aatgctagggacactctcatttcaacactctctaa--cactcactctcttattggattaaactagtgtatgtttcatcactttaagtggaacctatttcc 1468540  T
Q  513 aaagtgtgagacccaccatgat 534  Q
    || |||||||||||||| ||||    
T  1468541 aatgtgtgagacccaccttgat 1468562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 525
Target Start/End: Original strand, 21977188 - 21977300
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||| ||||| | ||||||||||||||||| |   ||||| | ||||||| |||||||  |||||||| ||||  ||||||||||||||| |||| |    
T  21977188 aatgctagggacattctcttttcaacactctctctaaaactcactttcttatttgatgaaactaatgtatgtcccactactttaagtggaacccatttcc 21977287  T
Q  513 aaagtgtgagacc 525  Q
    || ||||||||||    
T  21977288 aatgtgtgagacc 21977300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 528
Target Start/End: Complemental strand, 5602695 - 5602624
Alignment:
Q  457 tctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 528  Q
    ||||||||| |||||||| ||| |||| |||| ||||||||||| ||| ||||| |||||||||||||||||    
T  5602695 tctcttattggatgaaattaatatatgtcccaccactttaagtgaaacttatttccaaagtgtgagacccac 5602624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 523
Target Start/End: Complemental strand, 14341100 - 14340990
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    |||| ||| |||||| ||||||||||||||||| |  |||||||| | ||||| |||||||  ||| |||| |||| |||||||||||||||| |||| |    
T  14341100 aatgttaatgacactttcttttcaacactctctctaacactcatttttttattggatgaaactaatatatgtcccaccactttaagtggaacccatttcc 14341001  T
Q  513 aaagtgtgaga 523  Q
    ||  |||||||    
T  14341000 aatatgtgaga 14340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 525
Target Start/End: Complemental strand, 40126018 - 40125906
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    |||| |||||||||||| |||| ||| || |||||  || | ||| | ||||| ||| |||  ||||||||||||| |||||||||||||| | |||| |    
T  40126018 aatgttaaggacactatttttttaacgctttctttaacatttatttttttattggataaaactaatgtatgacccaccactttaagtggaatccatttcc 40125919  T
Q  513 aaagtgtgagacc 525  Q
    |||||||||||||    
T  40125918 aaagtgtgagacc 40125906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 534
Target Start/End: Original strand, 11247833 - 11247892
Alignment:
Q  475 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||| ||| ||| || ||||||||||||| |||| |||||||||||||||||||||||    
T  11247833 caatgtgtgatccaccattttaagtggaacccattttcaaagtgtgagacccaccatgat 11247892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 534
Target Start/End: Complemental strand, 18953335 - 18953223
Alignment:
Q  421 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 520  Q
    ||||||||||| ||||| ||| ||||   |||||||| | ||||| ||||||| |||||||||| ||| || ||| |||||||||  |||  ||||||||    
T  18953335 ggacactatctcttcaagactttcttcaacactcatttttttattggatgaaaccaatgtatgatccacca-ttttagtggaacccgtttctaaagtgtg 18953237  T
Q  521 agacccaccatgat 534  Q
    ||| ||||||||||    
T  18953236 agatccaccatgat 18953223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 527
Target Start/End: Complemental strand, 21970420 - 21970343
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagaccca 527  Q
    |||||| |||||||||  ||||||  | |||||| |||| |||||||||||||||| |||| ||| ||||||||||||    
T  21970420 cactcactctcttattgaatgaaactagtgtatgtcccaccactttaagtggaacccattttcaatgtgtgagaccca 21970343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 526
Target Start/End: Complemental strand, 15741950 - 15741874
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagaccc 526  Q
    ||||||||  |||||| ||| ||| |||||||||| | ||||||||||||| |||  |||| |||||||||||||||    
T  15741950 cactcattaacttattggataaaaccaatgtatgatcgatcactttaagtgaaactcatttccaaagtgtgagaccc 15741874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 2592965 - 2593021
Alignment:
Q  473 atcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 529  Q
    |||| |||||||| || |||||||||||||| | ||||  |||||||||||||||||    
T  2592965 atcagtgtatgactcaccactttaagtggaatccatttttaaagtgtgagacccacc 2593021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 31602076 - 31602120
Alignment:
Q  429 tcttttcaacactctctttgtcactcattctcttattagatgaaa 473  Q
    ||||||||||||||||| |  |||||||||||||||| |||||||    
T  31602076 tcttttcaacactctctctaacactcattctcttattggatgaaa 31602120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 413 - 529
Target Start/End: Original strand, 296837 - 296953
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||| ||||||| ||||||||||||||||| |  |||||| ||||||||| |||||||  | |||||| |||| ||| |||||||||||| |||| |    
T  296837 aatgctagggacactttcttttcaacactctctctaacactcactctcttattggatgaaactagtgtatgtcccaccaccttaagtggaacccatttcc 296936  T
Q  513 aaagtgtgagacccacc 529  Q
    || ||||||||||||||    
T  296937 aatgtgtgagacccacc 296953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 413 - 527
Target Start/End: Original strand, 214036 - 214149
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    |||||||| |||||| ||||||||||||||||||   |||||||||||||||| ||| ||| |||| ||||||||| |||||||| ||||  |  ||| |    
T  214036 aatgctaaagacactctcttttcaacactctcttcaacactcattctcttattggat-aaaccaatatatgacccaccactttaaatggagtccctttcc 214134  T
Q  513 aaagtgtgagaccca 527  Q
    |||||||||||||||    
T  214135 aaagtgtgagaccca 214149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 431 - 528
Target Start/End: Complemental strand, 10798438 - 10798341
Alignment:
Q  431 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 528  Q
    ||||||||||||| |||   |||||||||| |||| ||| ||| |||||||||||||| |||||||||||||||  |||| |||||| ||||||||||    
T  10798438 ttttcaacactctttttaagactcattctcgtattggataaaaccaatgtatgacccaccactttaagtggaactcatttccaaagtatgagacccac 10798341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 429 - 534
Target Start/End: Complemental strand, 22813435 - 22813330
Alignment:
Q  429 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 528  Q
    |||||| |||||||||||   |||||||| ||| ||| ||||||  |||||||||||||| |||||| ||||||||| ||||  |||||||||||| |||    
T  22813435 tctttttaacactctcttgaacactcattttctcattggatgaatgcaatgtatgacccaccacttttagtggaacccatttcgaaagtgtgagactcac 22813336  T
Q  529 catgat 534  Q
    ||||||    
T  22813335 catgat 22813330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 529
Target Start/End: Complemental strand, 49720181 - 49720065
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    |||||||||||||||  ||||||||||||||||    |||||| |  |||||| ||| |||| |||||||  |||| || ||||||||||||| |||| |    
T  49720181 aatgctaaggacactcacttttcaacactctctcaaacactcacttgcttattggattaaatgaatgtatatcccaccattttaagtggaacccatttcc 49720082  T
Q  513 aaagtgtgagacccacc 529  Q
    |||||||||||||||||    
T  49720081 aaagtgtgagacccacc 49720065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 528
Target Start/End: Original strand, 7791826 - 7791944
Alignment:
Q  410 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 509  Q
    ||||||| || ||||||| ||||||||||||| ||||   | |||| | ||| ||| | | ||| |||||| ||||||| |||||||||||||| |||||    
T  7791826 agaaatgttagggacactctcttttcaacactttcttcaacgctcactttctaattggcttaaaccaatgtgtgacccaccactttaagtggaatctatt 7791925  T
Q  510 tacaaagtgtgagacccac 528  Q
    | |||||||||||||||||    
T  7791926 tccaaagtgtgagacccac 7791944  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 534
Target Start/End: Complemental strand, 7640774 - 7640653
Alignment:
Q  413 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 512  Q
    ||||||| ||||||| |||||||||||||| || |  ||||   | ||||||| |||||||| |||||||| || | ||| ||||||||||||||||| |    
T  7640774 aatgctagggacactctcttttcaacactcactctaacacttgctttcttattggatgaaattaatgtatgtcctaccacattaagtggaacctatttcc 7640675  T
Q  513 aaagtgtgagacccaccatgat 534  Q
     ||||||||||| |||| ||||    
T  7640674 taagtgtgagactcaccttgat 7640653  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 527
Target Start/End: Complemental strand, 44225977 - 44225900
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagaccca 527  Q
    |||||| ||||||||| |||||||  | |||||| ||||||||||||||||||||| |||| ||| ||||||||||||    
T  44225977 cactcactctcttattggatgaaactagtgtatgtcccatcactttaagtggaacccattttcaatgtgtgagaccca 44225900  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 534
Target Start/End: Complemental strand, 34706703 - 34706640
Alignment:
Q  471 aaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||||||| ||||||| ||||||||| |||||| |||| |||||||||||| ||||||||||    
T  34706703 aaatcaatgtgtgacccaccactttaagcggaacccatttccaaagtgtgagatccaccatgat 34706640  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 534
Target Start/End: Complemental strand, 10817457 - 10817375
Alignment:
Q  453 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaaccta-tttacaaagtgtgagacccaccatgat 534  Q
    |||||||||||| |||| |||| ||| ||||||| |||||||||||||||||||| ||| |||||||| ||| ||||| ||||    
T  10817457 tcattctcttatcagataaaattaatctatgacctatcactttaagtggaacctatttttcaaagtgtcagatccaccctgat 10817375  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 437 - 534
Target Start/End: Complemental strand, 44911760 - 44911663
Alignment:
Q  437 acactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||||||||  |||| ||| | ||||| ||| |||||||| |||||| || || |||||||||||| |||||  ||||| ||||||||||||||||    
T  44911760 acactctctttaacacttatttttttattggataaaatcaatatatgacacaccaatttaagtggaacatatttctaaagtatgagacccaccatgat 44911663  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 529
Target Start/End: Original strand, 9774214 - 9774282
Alignment:
Q  461 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 529  Q
    ||||| |||||||| |||||| | |||| |||||||||||||||| |||| |||| |||||||||||||    
T  9774214 ttattggatgaaattaatgtacgtcccaccactttaagtggaaccaattttcaaaatgtgagacccacc 9774282  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 42780673 - 42780739
Alignment:
Q  415 tgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgta 481  Q
    ||||| |||||||||||||  |||||||||| |  |||||||||||||||| ||||||||| |||||    
T  42780673 tgctatggacactatctttctaacactctctctaacactcattctcttattggatgaaatccatgta 42780739  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 529
Target Start/End: Original strand, 8475199 - 8475271
Alignment:
Q  457 tctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 529  Q
    ||||||||| |||||||  |||||||| | || | |||||| ||||||| |||| ||||||||||||||||||    
T  8475199 tctcttattggatgaaactaatgtatgtctcaccgctttaaatggaacccatttccaaagtgtgagacccacc 8475271  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 493
Target Start/End: Original strand, 28529271 - 28529334
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcact 493  Q
    |||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||    
T  28529271 cttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccaccact 28529334  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 534
Target Start/End: Complemental strand, 46205649 - 46205590
Alignment:
Q  475 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgat 534  Q
    |||||| ||| | |||||||||||||||||  |||| |||||||||||||| ||||||||    
T  46205649 caatgtgtgatctatcactttaagtggaactcatttccaaagtgtgagacctaccatgat 46205590  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 534
Target Start/End: Complemental strand, 38169156 - 38169051
Alignment:
Q  429 tcttttcaacactctctttgtcactcattctcttattagatgaaatc-aatgtatgacccatcactttaagtggaacctatttacaaagtgtgagaccca 527  Q
    ||||||||||||| ||||   |||||||| | ||||| ||| ||||| ||||||||| || |||||||||||| || | ||||||||||| ||||| | |    
T  38169156 tcttttcaacactatcttcaacactcatttttttattggat-aaatctaatgtatgatccgtcactttaagtgaaaaccatttacaaagtttgagatcta 38169058  T
Q  528 ccatgat 534  Q
    |||||||    
T  38169057 ccatgat 38169051  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 495
Target Start/End: Complemental strand, 5452222 - 5452157
Alignment:
Q  430 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 495  Q
    ||||||||||||||||||  || ||| ||| ||||| ||||||||||||||||  |||| ||||||    
T  5452222 cttttcaacactctctttaacattcactcttttattggatgaaatcaatgtatttcccaccacttt 5452157  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 523
Target Start/End: Complemental strand, 53655524 - 53655476
Alignment:
Q  475 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgaga 523  Q
    |||||| ||||||| || ||||||||||||| |||| ||||||||||||    
T  53655524 caatgtgtgacccaccattttaagtggaacccattttcaaagtgtgaga 53655476  T

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Target: scaffold0370 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 11249 - 11209
Alignment:
Q  101 aattttcagcttttggagtgtataaaaggccaacatttttt 141  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  11249 aattttcagcttttggagtgtataaaaggccaagatttttt 11209  T

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Target: scaffold0370; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 16539 - 16499
Alignment:
Q  101 aattttcagcttttggagtgtataaaaggccaacatttttt 141  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  16539 aattttcagcttttggagtgtataaaaggccaagatttttt 16499  T

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Target: scaffold0155 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 501
Target Start/End: Original strand, 35632 - 35683
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtgg 501  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| |||| ||||    
T  35632 cactcactctcttatttgatgaaatcaatgtatgtcccatcattttatgtgg 35683  T

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Target: scaffold0147 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 528
Target Start/End: Original strand, 28334 - 28412
Alignment:
Q  450 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 528  Q
    |||||| | ||||||| ||||||||||||||  | ||||||| |||| |||| ||| |||| ||||||||| |||||||    
T  28334 cactcactttcttattggatgaaatcaatgtgggtcccatcaatttatgtgggacccattttcaaagtgtgggacccac 28412  T

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