View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_84 (Length: 250)
Name: NF3114_low_84
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_84 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 28279211 - 28278970
Alignment:
| Q |
1 |
caccagatgccaattcaagtgctattttgtgccttacactccaaggaagaggtgttcttttaccaaataaatgagaatcaaggctaccgtttgacataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
28279211 |
caccagatgccaattcaagtgctattttgtgccttagactccaagaaagaggtattcttttaccaaataaatgagaatccaggctaccgttaggcataaa |
28279112 |
T |
|
| Q |
101 |
ctcgtaaacaagaagaaactcacctttttcatggcaccaacctaacaacttcacaagattccggtgtctcaatgtgctaatgactttaacttcagtaaca |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28279111 |
ctcataaacaagaagaaactcacctttttcatggcaccaacctaacaacttcacaagattccggtgtctcaatgggctaatgactttaacttcagtaaca |
28279012 |
T |
|
| Q |
201 |
tactctttcttcccttgtctagatcccttcgatattttcttc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
28279011 |
tactctttcttcccttgtctagatcccttcgatattttcttc |
28278970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 28294476 - 28294716
Alignment:
| Q |
2 |
accagatgccaattcaagtgctattttgtgccttacactccaaggaagaggtgttcttttaccaaataaatgagaatcaaggctaccgtttgacataaac |
101 |
Q |
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|||||| |||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||| |
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| T |
28294476 |
accagaagccaatccaagagctattttgtgccttacaccccaagaaagaggtgttcttttaccaaataaatgagaatcaagactaccatttggcatgaac |
28294575 |
T |
|
| Q |
102 |
tcgtaaacaagaagaaactcacctttttcatggcaccaacctaacaacttcacaagattccggtgtctcaatgtgctaatgactttaacttcagtaacat |
201 |
Q |
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| T |
28294576 |
tcataaacaagtagaaactcacctttgtcatggcaccaacccaaaagcttcacaagattcctatgtctcagttgactaatgactttaacttcagttacat |
28294675 |
T |
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| Q |
202 |
actctttcttcccttgtctagatcccttcgatattttcttc |
242 |
Q |
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|||||||||| |||||||| ||||| | |||||||||||| |
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| T |
28294676 |
actctttctttccttgtcttgatcctcttgatattttcttc |
28294716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 28304678 - 28304918
Alignment:
| Q |
2 |
accagatgccaattcaagtgctattttgtgccttacactccaaggaagaggtgttcttttaccaaataaatgagaatcaaggctaccgtttgacataaac |
101 |
Q |
| |
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|||||| |||||| |||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||| |
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| T |
28304678 |
accagaggccaatccaagagttattttgtgccttacaccccaagaaagaggtgttcttttaccaaataaatgagaatcaagactaccatttggcatgaac |
28304777 |
T |
|
| Q |
102 |
tcgtaaacaagaagaaactcacctttttcatggcaccaacctaacaacttcacaagattccggtgtctcaatgtgctaatgactttaacttcagtaacat |
201 |
Q |
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|| |||| ||| |||||||||||||| ||||||||||| ||||| | |||||||||||||| ||||||| | ||||| |||||||||||||| |||| |
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| T |
28304778 |
tcataaataagtagaaactcacctttgtcatggcaccagcctaagagcttcacaagattcctatgtctcagttgactaataactttaacttcagttacat |
28304877 |
T |
|
| Q |
202 |
actctttcttcccttgtctagatcccttcgatattttcttc |
242 |
Q |
| |
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|||||||||| |||||||| || || | |||||||||||| |
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| T |
28304878 |
actctttctttccttgtcttgaccctctggatattttcttc |
28304918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 28264660 - 28264901
Alignment:
| Q |
1 |
caccagatgccaattcaagtgctattttgtgccttacactccaaggaagaggtgttcttttaccaaataaatgagaatcaaggctaccgtttgacataaa |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||| || |
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| T |
28264660 |
caccagaggccaagccaagtgctattttgtgccttacaatccaaggaagaggtgtccttttaccaaataaatgagaatcaagactaccatttggcatgaa |
28264759 |
T |
|
| Q |
101 |
ctcgtaaacaagaagaaactcacctttttcatggcaccaacctaacaacttcacaagattccggtgtctcaatgtgctaatgactttaacttcagtaaca |
200 |
Q |
| |
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||| |||||||| |||||||||||||| ||||||||||| || | | |||||||||||| | ||||||| | ||||| |||||||||||||| ||| |
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| T |
28264760 |
ctcataaacaagtagaaactcacctttatcatggcaccatcccagaagcttcacaagatttctatgtctcagttgactaataactttaacttcagttaca |
28264859 |
T |
|
| Q |
201 |
tactctttcttcccttgtctagatcccttcgatattttcttc |
242 |
Q |
| |
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||||||||||| |||||||| || || | |||||||||||| |
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| T |
28264860 |
tactctttctttccttgtcttgaccctctggatattttcttc |
28264901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 28289068 - 28288835
Alignment:
| Q |
9 |
gccaattcaagtgctattttgtgccttacactccaaggaagaggtgttcttttaccaaataaatgagaatcaaggctaccgtttgacataaactcgtaaa |
108 |
Q |
| |
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|||||| |||| |||||||| || ||||||||||||| ||||||||| ||||| || ||||||||||||||||| ||||| |||| ||| ||||| |||| |
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| T |
28289068 |
gccaatccaagagctattttatgtcttacactccaagaaagaggtgtcctttttccgaataaatgagaatcaagactaccatttggcatgaactcataaa |
28288969 |
T |
|
| Q |
109 |
caagaagaaactcacctttttcatggcaccaacctaacaacttcacaagattccggtgtctcaatgtgctaatgactttaacttcagtaacatactcttt |
208 |
Q |
| |
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|||| |||||||||||||| ||||||||||| ||||| | |||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
28288968 |
caagtagaaactcacctttgtcatggcaccatcctaagagcttcacaagattcctatgtctcagctggctaataactttaacttcagttacatactcttt |
28288869 |
T |
|
| Q |
209 |
cttcccttgtctagatcccttcgatattttcttc |
242 |
Q |
| |
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|||||||||||| || || | |||||||||||| |
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| T |
28288868 |
cttcccttgtcttgaccctcttgatattttcttc |
28288835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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