View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3114_low_85 (Length: 250)
Name: NF3114_low_85
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 39170395 - 39170153
Alignment:
| Q |
2 |
cactgctatttgatgaaaaacgaattgagtaatagaaagtgggagagtaaaaaacttgatgactagtttaagatgtgattgtcttagctaagtattgtat |
101 |
Q |
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| T |
39170395 |
cactgccatttgatgaaaaacgaattgagtaatagaaagtgggagagtaaaaaacttgatgactagtttaagatgtgattgtcttagctaagtatcgtat |
39170296 |
T |
|
| Q |
102 |
tttctattttttaagatgagtcatataattttggaataaggaaatttaagtgagttggactctaaaaaggtcaccagaattatgaaaggtttggtaagca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39170295 |
tttctattttttaagatgagtcatataattttggaataaggaaatttaagtgagttgaactctaaaaaggtcaccaaaattatgaaaggtttggtaagca |
39170196 |
T |
|
| Q |
202 |
ctacctattagaatgaacaatcacatatgcttgtctctgctcc |
244 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39170195 |
ctacctattagaatgaacaatcacatatgcttgtttctgctcc |
39170153 |
T |
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