View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_low_86 (Length: 250)

Name: NF3114_low_86
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_low_86
NF3114_low_86
[»] chr1 (15 HSPs)
chr1 (1-235)||(6372299-6372533)
chr1 (2-235)||(6366750-6366983)
chr1 (2-235)||(6399377-6399610)
chr1 (2-235)||(6380359-6380592)
chr1 (2-235)||(6404100-6404333)
chr1 (2-235)||(6420547-6420780)
chr1 (2-235)||(6379142-6379375)
chr1 (2-235)||(6348805-6349038)
chr1 (2-235)||(6358847-6359080)
chr1 (1-235)||(6415389-6415623)
chr1 (2-235)||(6357473-6357706)
chr1 (5-231)||(6391118-6391344)
chr1 (2-228)||(6347714-6347940)
chr1 (2-225)||(6427885-6428108)
chr1 (130-204)||(6439622-6439696)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6372299 - 6372533
Alignment:
Q  1 cttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  6372299 cttaaagaagaagttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtacttcatg 6372398  T
Q  101 gacggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatcttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6372399 gacggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatcttta 6372498  T
Q  201 atggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||||||||||||||||||||||||||||||||||    
T  6372499 atggagaaagcttatgtgagaaagcagcttcttat 6372533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 6366750 - 6366983
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||  ||||||  |||  |||| ||||||||||    
T  6366750 ttaaagaagaagttgccagaaaatgtgacacttaaaggtcctagtggagttgtgtggaatatagggctgaatactagaggtgaatctgtttatttcgtgg 6366849  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    |||||||||  || || ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6366850 acggttggcgacgtttcgtgaaagatcactctttgaaagagaatgatttccttgtctttaagtacaacggtgaatcactctttgaggttttaatctttaa 6366949  T
Q  202 tggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||||||||||| ||||| |||||||||||||||    
T  6366950 tggagaaagcttctgtgaaaaagcagcttcttat 6366983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 6399377 - 6399610
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||| || |||||||    
T  6399377 ttaaagaagaagttgccagaaaatgtgactcttaaaggtcctagtggagttgtgtggaatataggactgacaactagagataatactgtttacttcgtgg 6399476  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    |||||||||| |  || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6399477 acggttggcaacaattcgtgaacgatcactctttgaaagagaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttga 6399576  T
Q  202 tggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||| | || || |||||||| ||| ||||||||    
T  6399577 tggaaatagtttttgtgagaaggcaacttcttat 6399610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 6380359 - 6380592
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| || || ||||    
T  6380359 ttaaagaagaagttgccagaaaatgtgacccttaaaggtcctagtggagttgtgtggaatatagggctgacaactagagatgatattgtttactttgtgg 6380458  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    |||||||| | || ||  | |||||||| ||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |    
T  6380459 acggttggaaacgattcattaaagatcactctttgaaacagaatgatttccttgtctttaagtacaacggtaaatcactctttgaggttttaatctttga 6380558  T
Q  202 tggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||||| || || |||||||| ||||||||||||    
T  6380559 tggagatagtttctgtgagaaggcagcttcttat 6380592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 6404100 - 6404333
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || |||| || || |||  ||    
T  6404100 ttaaagaacaagttgcctgaaaatgtgacccttaaaggtcctagtggagttgtttggaatataggactgacaactagagattatacggtttacttcacgg 6404199  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    |||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  6404200 acggttggcaacgatttgtgaaagatcattctttgaaagagaatgatttccttgtttttaagtacaatggtgaatcactctttgaggttttaatctttga 6404299  T
Q  202 tggagaaagcttatgtgagaaagcagcttcttat 235  Q
    | |||| | ||| |||||||| ||| ||||||||    
T  6404300 tcgagataacttttgtgagaaggcaacttcttat 6404333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 6420547 - 6420780
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||| ||| |||| ||| ||||||||||| || ||||||| || |||||||    
T  6420547 ttaaaaaagaagttgccagaaaatgtgacccttaagggtcctagtggagctgtgtgggatattgggttgacaactagagataatactgtttacttcgtgg 6420646  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
     ||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6420647 gcggttgggagcgattcgtgaaagatcattctttgaaagagaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttga 6420746  T
Q  202 tggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||||| | ||| |||||||| ||| ||||||||    
T  6420747 tggagataacttttgtgagaaggcaacttcttat 6420780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 6379142 - 6379375
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||  | || | |  ||    
T  6379142 ttaaagaacaagttgccagcaaatgtgacccttaaaggtcctagtggagttgtgtgggatatagggctgacaactagagatgatacaatttactccacgg 6379241  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    | |||||||| |  || ||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |    
T  6379242 atggttggcaacaattcgtgaaagatcactctttgaaacagaatgatttccttgtcttcaagtacaatggtgaatcactgtttgaggttttaatctttca 6379341  T
Q  202 tggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||||||||||| || ||||||||||||||||||    
T  6379342 tggagaaagcttctgcgagaaagcagcttcttat 6379375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 6348805 - 6349038
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||| |||    ||| || |||||||    
T  6348805 ttaaataagaagttgccagaaaatgtgacccttaaaggtcctagtggagttacatggaatataaggctgacaactagagatggctttgtttacttcgtgg 6348904  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    |||||||||| |  ||  |||| ||||| || |||||||  |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| |    
T  6348905 acggttggcaacaattcatgaacgatcactcgttgaaagctaatgatttccttgtctgtaagtacaatggtgaatcacacttcgaggttttaatctttga 6349004  T
Q  202 tggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||||||||||| |||||||||| ||||||||||    
T  6349005 tggagaaagcttctgtgagaaagaagcttcttat 6349038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 6358847 - 6359080
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    ||||| ||||| |||||||||||||||||||||||||||||  |||| |||| |||||| |||||||| | ||||||| | |||||||| || ||| ||     
T  6358847 ttaaataagaagttgccagaaaatgtgacccttaaaggtcccggtggtgttgcatggaaaatagggctcataactagagacgatactgtttacttcctga 6358946  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    |||||||||| || || ||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||| ||||| |||||| |    
T  6358947 acggttggcaacgattcgtgaacgatcactctttgaaagataatgatttccttgtctttaattacaatggtgagtcacactttgatgttttgatctttga 6359046  T
Q  202 tggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||||||||||| |||||||||| ||||||||||    
T  6359047 tggagaaagcttctgtgagaaagaagcttcttat 6359080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6415389 - 6415623
Alignment:
Q  1 cttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtg 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||| || |||       
T  6415389 cttaaagaagaagttgccagaaaatgtgacccttaaaggtcctagtggagttgtgtggaatatagggctgacaactatagatgacactgtttacttcaca 6415488  T
Q  101 gacggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatcttta 200  Q
     |||||||||| |  |||||||| ||||| ||||||||||| | |||||||||| |||| |||||||||||||||||  | ||||| ||||||||||||     
T  6415489 aacggttggcaacaatttgtgaatgatcactctttgaaagagagtgatttccttttcttcaagtacaatggtgaatcgttgtttgaagttttaatctttg 6415588  T
Q  201 atggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||||   || || |||||||| ||||||||||||    
T  6415589 atggacgtagtttctgtgagaaggcagcttcttat 6415623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 6357473 - 6357706
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    ||||||||||| |||||||  || ||||||||||||||||||||||||||||| |||||| | ||||||||| ||||| |||||||  | || |||  |     
T  6357473 ttaaagaagaagttgccaggcaacgtgacccttaaaggtcctagtggagttgtgtggaatgttgggctgacagctagagatgataccatttacttcacga 6357572  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    | || |||||  | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |    
T  6357573 atggatggcaaagattcgtgaaagatcactctttgaaagagaatgatttccttgtctttaagtacaatggggagtcactctttgaagttttaatctttca 6357672  T
Q  202 tggagaaagcttatgtgagaaagcagcttcttat 235  Q
    |||||| || || |||||||| ||||||||||||    
T  6357673 tggagatagtttctgtgagaaggcagcttcttat 6357706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 6391118 - 6391344
Alignment:
Q  5 aagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtggacg 104  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||  ||||||| || ||||||| || ||||||||||    
T  6391118 aagaagaagctgccagaaaatgtgacccttaaaggtcctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacg 6391217  T
Q  105 gttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatgg 204  Q
    ||||||| | |||||  | |||||||||| ||||||| |||||||||   ||||||||||||||||| |||||| | ||  | || ||||||||| | ||    
T  6391218 gttggcatcagtttgcaagagatcattctctgaaagagaatgatttcgcagtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaagg 6391317  T
Q  205 agaaagcttatgtgagaaagcagcttc 231  Q
    ||||||||| ||||||||||| |||||    
T  6391318 agaaagcttttgtgagaaagcggcttc 6391344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 6347714 - 6347940
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    ||||||||||| || ||||||||||||||| ||||| ||||||| ||| |||| |||||||||||||||||| |||||  ||||||||| || |||  |     
T  6347714 ttaaagaagaagttaccagaaaatgtgaccattaaatgtcctagcggaattgtgtggaatatagggctgacagctagaggtgatactgtttacttcacga 6347813  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    || ||||||| |  || || ||||| || || ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  6347814 acagttggcaacaattcgtcaaagaccactccttgaaggaaaatgatttccttgtatttaagtacaatggtgaatcacactttgaggttttaatctttaa 6347913  T
Q  202 tggagaaagcttatgtgagaaagcagc 228  Q
    |||| | || || |||||||| |||||    
T  6347914 tggaaatagtttctgtgagaaggcagc 6347940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 6427885 - 6428108
Alignment:
Q  2 ttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatttcgtgg 101  Q
    ||||| ||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | | || ||||| || |||        
T  6427885 ttaaaaaagaagttgcctgaaaatgtgaaccttaaaggtcctagtggagttgtgtggaatatagggctgacaactaaagaggacactgtttacttcacaa 6427984  T
Q  102 acggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaa 201  Q
    ||||||||||  | |||||||| ||||| ||||||||||| | |||||||||| | || || |||||||| |||||| | ||||| |||||||| ||| |    
T  6427985 acggttggcaaggatttgtgaatgatcactctttgaaagagagtgatttcctttttttcaaatacaatggagaatcattgtttgaagttttaatatttca 6428084  T
Q  202 tggagaaagcttatgtgagaaagc 225  Q
    ||| || | |||||| ||||||||    
T  6428085 tggtgagaccttatgcgagaaagc 6428108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 6439622 - 6439696
Alignment:
Q  130 ttctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatgg 204  Q
    |||||||||||| || || |||||  ||||||||||||||||| ||||  | |||||||||||||| ||| ||||    
T  6439622 ttctttgaaagagaacgacttcctgttctttaagtacaatggtaaatcgttgtttgaggttttaatatttgatgg 6439696  T

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