View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_low_93 (Length: 244)

Name: NF3114_low_93
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_low_93
NF3114_low_93
[»] chr7 (3 HSPs)
chr7 (17-227)||(35629507-35629719)
chr7 (27-227)||(35635935-35636135)
chr7 (59-220)||(35632705-35632866)
[»] chr3 (4 HSPs)
chr3 (96-227)||(10299126-10299257)
chr3 (96-227)||(10319558-10319689)
chr3 (96-227)||(10336674-10336805)
chr3 (96-194)||(10338459-10338557)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 35629507 - 35629719
Alignment:
Q  17 cacaaatacttattttcattttataaagactaaatcaaaatgaaaggaaaaaccaagagaagaaaaagtcatagaaatcgatat--atacttacatttct 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  35629507 cacaaatacttattttcattttataaagactaaatcaaaatgaaaggaaaaaccaagaaaagaaaaagtcatagaaatcgatatatatacttacatttct 35629606  T
Q  115 tggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactcgtcactatatgttaaaact 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35629607 tggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaacttgtcactatatgttaaaact 35629706  T
Q  215 ctagtacgcatct 227  Q
    |||||||||||||    
T  35629707 ctagtacgcatct 35629719  T

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Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 35635935 - 35636135
Alignment:
Q  27 tattttcattttataaagactaaatcaaaatgaaaggaaaaaccaagagaagaaaaagtcatagaaatcgatatatacttacatttcttggattgttttg 126  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| || || |||||||| |||||||||    
T  35635935 tattttcattttataaagactaaatcaaaatgaaaggaaaaataaagaaaagaaaaagtcatagaaatcgatatacacatatatttcttgaattgttttg 35636034  T
Q  127 aacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactcgtcactatatgttaaaactctagtacgcatc 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||  | | ||||||| |||||| |||||||    
T  35636035 aacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatatcagaaacttatcgttctctgttaaatctctagaacgcatc 35636134  T
Q  227 t 227  Q
    |    
T  35636135 t 35636135  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 35632705 - 35632866
Alignment:
Q  59 aaaggaaaaaccaagagaagaaaaagtcatagaaatcgatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaaga 158  Q
    |||||||||||||||| ||||| |||||||||| || ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  35632705 aaaggaaaaaccaagaaaagaacaagtcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaaga 35632804  T
Q  159 aatcccaaagtccatcagaagcaaatataagaaactcgtcactatatgttaaaactctagta 220  Q
    | |||||||||||| |||| ||||||||||||||||  ||| | | ||||||||||||||||    
T  35632805 actcccaaagtccaacagacgcaaatataagaaacttatcattctctgttaaaactctagta 35632866  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 10299257 - 10299126
Alignment:
Q  96 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 195  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10299257 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt 10299158  T
Q  196 gtcactatatgttaaaactctagtacgcatct 227  Q
     ||| ||| |||||||||||||||| ||||||    
T  10299157 atcattatctgttaaaactctagtatgcatct 10299126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 10319689 - 10319558
Alignment:
Q  96 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 195  Q
    ||||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10319689 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10319590  T
Q  196 gtcactatatgttaaaactctagtacgcatct 227  Q
     ||| ||| |||||||||||||||| ||||||    
T  10319589 atcattatctgttaaaactctagtatgcatct 10319558  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 10336805 - 10336674
Alignment:
Q  96 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactc 195  Q
    ||||||||| ||||||||| ||||| ||| ||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||| |||||     
T  10336805 gatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10336706  T
Q  196 gtcactatatgttaaaactctagtacgcatct 227  Q
     ||| ||| |||||||||||||||| ||||||    
T  10336705 atcattatctgttaaaactctagtatgcatct 10336674  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 10338557 - 10338459
Alignment:
Q  96 gatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaact 194  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| |||| ||||||||| ||||||    
T  10338557 gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaact 10338459  T

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