View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3114_low_94 (Length: 242)
Name: NF3114_low_94
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3114_low_94 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28279312 - 28279535
Alignment:
| Q |
1 |
ttttgggttggctaaattaatagaccatgaacttgggcctcaaacaacagtgattgctggaaccataggatatttggctccagaatatataagtacaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28279312 |
ttttgggttggctaaattaatagaccatgagcttgggcctcaaacaacagtgattgctggaaccttaggatatttggctccagaatatataagtacaggt |
28279411 |
T |
|
| Q |
101 |
aaggctagcaaagaatctgatgtctatagctttggcgttgtcgtcttggagatcacaactggaaggaaagccgttgatgttatgagggataaagatggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
28279412 |
aaggctagcaaagaatctgatgtctatagctttggggttgtcgtcttggagatcacaactggaaggaaagccgttgaagttatggaggacaaagatggag |
28279511 |
T |
|
| Q |
201 |
ataagggattgattgagtgggttt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28279512 |
ataagggattgattgagtgggttt |
28279535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 28289178 - 28289400
Alignment:
| Q |
2 |
tttgggttggctaaattaatagaccatgaacttgggcctcaaacaacagtgattgctggaaccataggatatttggctccagaatatataagtacaggta |
101 |
Q |
| |
|
||||||||||||||| |||| || ||||| |||| || |||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28289178 |
tttgggttggctaaactaatggatcatgagattggaccccaaacaacagtggttgccggaaccttaggctatttggctccagaatatataagtacaggta |
28289277 |
T |
|
| Q |
102 |
aggctagcaaagaatctgatgtctatagctttggcgttgtcgtcttggagatcacaactggaaggaaagccgttgatgttatgagggataaagatggaga |
201 |
Q |
| |
|
||||||||||||| || ||||| ||||| ||||| ||||| | ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
28289278 |
aggctagcaaagagtcagatgtgtatagttttggggttgttgccttggagatcacaactggacggaaagctgttgaagttatgagggataaagatggaga |
28289377 |
T |
|
| Q |
202 |
taagggattgattgagtgggttt |
224 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28289378 |
taagggattgattgagtgggttt |
28289400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 28264558 - 28264336
Alignment:
| Q |
2 |
tttgggttggctaaattaatagaccatgaacttgggcctcaaacaacagtgattgctggaaccataggatatttggctccagaatatataagtacaggta |
101 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| || |||||||||||| |||| |||||| |||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
28264558 |
tttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgccggaaccttaggctatatggctccggaatatataagtacaggta |
28264459 |
T |
|
| Q |
102 |
aggctagcaaagaatctgatgtctatagctttggcgttgtcgtcttggagatcacaactggaaggaaagccgttgatgttatgagggataaagatggaga |
201 |
Q |
| |
|
|| |||||||||| || ||||| ||||| ||||| ||||| | |||||| ||| ||||||||| |||||| ||| | ||||||| ||| ||| || ||| |
|
|
| T |
28264458 |
agactagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaaggtgaaga |
28264359 |
T |
|
| Q |
202 |
taagggattgattgagtgggttt |
224 |
Q |
| |
|
||||||||| ||||| ||||||| |
|
|
| T |
28264358 |
taagggattaattgactgggttt |
28264336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28304576 - 28304353
Alignment:
| Q |
1 |
ttttgggttggctaaattaatagaccatgaacttgggcctcaaacaacagtgattgctggaaccataggatatttggctccagaatatataagtacaggt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| || | | | || ||||| | || ||| | |||||||||||| | |||||||| |
|
|
| T |
28304576 |
ttttgggttggctaaattaatggaccatgaacttgggcctcaaacgacggggctggccggaacattcggctatctagctccagaatatgtgagtacagga |
28304477 |
T |
|
| Q |
101 |
aaggctagcaaagaatctgatgtctatagctttggcgttgtcgtcttggagatcacaactggaaggaaagccgttgatgttatgagggataaagatggag |
200 |
Q |
| |
|
| ||| || ||||| || ||||| ||||| ||||| | || ||||| ||||| || | |||| ||||| ||| ||||||| ||| ||||||| || |
|
|
| T |
28304476 |
agggcgagtaaagagtcagatgtttatagttttgggatagttgtcttagagataacctccggaaaaaaagctactgaagttatgaaggagaaagatgaag |
28304377 |
T |
|
| Q |
201 |
ataagggattgattgagtgggttt |
224 |
Q |
| |
|
| |||||| ||||||||||||||| |
|
|
| T |
28304376 |
agaagggaatgattgagtgggttt |
28304353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28294374 - 28294327
Alignment:
| Q |
1 |
ttttgggttggctaaattaatagaccatgaacttgggcctcaaacaac |
48 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
28294374 |
ttttgggttggctaagttaatggaccatgaacttgggccgcaaacaac |
28294327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University