View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3114_low_96 (Length: 241)

Name: NF3114_low_96
Description: NF3114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3114_low_96
NF3114_low_96
[»] chr7 (3 HSPs)
chr7 (108-227)||(17818128-17818247)
chr7 (19-89)||(15749088-15749158)
chr7 (19-91)||(38505473-38505545)
[»] chr6 (1 HSPs)
chr6 (19-89)||(1567153-1567223)
[»] chr5 (2 HSPs)
chr5 (164-209)||(27178595-27178640)
chr5 (19-91)||(18670903-18670975)
[»] chr2 (3 HSPs)
chr2 (19-92)||(11514913-11514986)
chr2 (19-93)||(4003296-4003370)
chr2 (19-91)||(6655988-6656060)
[»] chr4 (2 HSPs)
chr4 (19-92)||(16422788-16422860)
chr4 (19-85)||(16318493-16318559)
[»] chr1 (2 HSPs)
chr1 (19-91)||(36886740-36886812)
chr1 (19-92)||(36269612-36269685)
[»] chr8 (5 HSPs)
chr8 (19-90)||(23932696-23932767)
chr8 (165-207)||(13303348-13303389)
chr8 (19-85)||(21173996-21174062)
chr8 (19-91)||(13227576-13227648)
chr8 (19-91)||(26772780-26772852)
[»] chr3 (1 HSPs)
chr3 (165-207)||(25535495-25535537)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 17818247 - 17818128
Alignment:
Q  108 ttccactattctctcccaacattagaattgagctccatattgcatggcatccgcgcttgtaagttcagattataatctaagagggagggtgaattaggtt 207  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||    
T  17818247 ttccactattctctaccaacattagaattgagctacatattgcatggcatcctcccttgtaagttcagattataacctaagagggagggtgaattaggtt 17818148  T
Q  208 atgcgactttttagaataat 227  Q
    |||||||||||||| |||||    
T  17818147 atgcgactttttaggataat 17818128  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 15749088 - 15749158
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacct 89  Q
    ||||||||||| ||||||||||||||||| || ||||| ||||| | |||||||| || ||||||||||||    
T  15749088 tcttccacttgctcattccttttttcctaagccttcccctcccttcccctccaaactcgcaaacaaaacct 15749158  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 38505473 - 38505545
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaa 91  Q
    ||||||||||| ||||||||||||||| | || ||||| ||||| | |||||||| || |||||||| |||||    
T  38505473 tcttccacttgctcattccttttttcccaagccttcccctcccttcccctccaaactcgcaaacaaagcctaa 38505545  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 1567223 - 1567153
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacct 89  Q
    ||||||||||| ||||||||||||||||| || ||||| ||||| | |||||||| || ||||||||||||    
T  1567223 tcttccacttgctcattccttttttcctaagccttcccctcccttcccctccaaactcgcaaacaaaacct 1567153  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 27178640 - 27178595
Alignment:
Q  164 ttgtaagttcagattataatctaagagggagggtgaattaggttat 209  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  27178640 ttgtaagtttagattataatctaagagtgagggtgaattaggttat 27178595  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 18670975 - 18670903
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaa 91  Q
    ||||| ||||| ||||||||||||||| | || ||||| ||||| | |||||||| ||||||||||| |||||    
T  18670975 tcttcgacttgatcattccttttttccgaagccttcccctcccttcccctccaaactcacaaacaaagcctaa 18670903  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 11514986 - 11514913
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaag 92  Q
    ||||||||||| ||||||||||||||||| || ||||| ||||| | |||||||| || |||||||| ||||||    
T  11514986 tcttccacttgctcattccttttttcctaagccttcccctcccttcccctccaaactcgcaaacaaagcctaag 11514913  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 4003370 - 4003296
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaaga 93  Q
    ||||||||||| ||||||||||||||| | ||  |||| ||||| |  ||||||| ||||||||||| |||||||    
T  4003370 tcttccacttgctcattccttttttccaaagccctcccctcccttccactccaaactcacaaacaaagcctaaga 4003296  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 6656060 - 6655988
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaa 91  Q
    ||||||||||| ||||||||||||||||  || ||||| ||||| | |||||||| || || ||||| |||||    
T  6656060 tcttccacttgctcattccttttttccttagccttcccctcccttcccctccaaactcgcagacaaagcctaa 6655988  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 16422860 - 16422788
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaag 92  Q
    ||||||| ||| |||||| |||||||| | |||||||| ||||| | |||||||| ||||||||||||||||||    
T  16422860 tcttccagttgctcattctttttttccaa-gctttcccctcccttcccctccaaactcacaaacaaaacctaag 16422788  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 16318559 - 16318493
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaa 85  Q
    ||||||||||| ||||||||||||||||| || ||||| ||||| | |||| ||| || ||||||||    
T  16318559 tcttccacttgctcattccttttttcctaagccttcccctcccttcccctcaaaactcgcaaacaaa 16318493  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 36886812 - 36886740
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaa 91  Q
    ||||||||||| ||||||||||||||| | || ||||| ||||| | |||||||| || |||||||| |||||    
T  36886812 tcttccacttgctcattccttttttcccaagccttcccctcccttcccctccaaactcgcaaacaaagcctaa 36886740  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 36269685 - 36269612
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaag 92  Q
    ||||||||||| ||||||||||||||| | || ||||| || || | |||||||| || |||||||| ||||||    
T  36269685 tcttccacttgctcattccttttttcccaagccttcccctcacttcccctccaaactcgcaaacaaagcctaag 36269612  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 23932696 - 23932767
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaaccta 90  Q
    |||||||||| || ||||||||||||| | || ||||||||||| | |||||||| || |||||||| ||||    
T  23932696 tcttccacttatttattccttttttcccaagccttcccttcccttcccctccaaactcgcaaacaaagccta 23932767  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 13303389 - 13303348
Alignment:
Q  165 tgtaagttcagattataatctaagagggagggtgaattaggtt 207  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  13303389 tgtaagttcagattataacctaagaggg-gggtgaattaggtt 13303348  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 21173996 - 21174062
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaa 85  Q
    ||||||||||| ||||||||||||||||| || ||||| ||||| |  ||||||| || ||||||||    
T  21173996 tcttccacttgctcattccttttttcctaagcattcccctcccttccactccaaactcgcaaacaaa 21174062  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 13227648 - 13227576
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaa 91  Q
    ||||||||||  ||||||||||||||||| |||||  | | ||| | |||||||| || ||||||||||||||    
T  13227648 tcttccacttcctcattccttttttcctaagctttttccttcctcctcctccaaattcgcaaacaaaacctaa 13227576  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 26772780 - 26772852
Alignment:
Q  19 tcttccacttgttcattccttttttcctatgctttcccttccctgcacctccaaaatcacaaacaaaacctaa 91  Q
    ||||||||||| ||||||||||||||||| || ||||  |||||   |||||||| || |||||||| |||||    
T  26772780 tcttccacttgctcattccttttttcctaagccttcctctccctttccctccaaactcgcaaacaaagcctaa 26772852  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 25535495 - 25535537
Alignment:
Q  165 tgtaagttcagattataatctaagagggagggtgaattaggtt 207  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||    
T  25535495 tgtaagttcatattgtaacctaagagggagggtgaattaggtt 25535537  T

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