View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115-Insertion-3 (Length: 525)
Name: NF3115-Insertion-3
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115-Insertion-3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 227 - 525
Target Start/End: Complemental strand, 2472311 - 2472016
Alignment:
| Q |
227 |
tacaaccgtcgctaacaaattttagtaaaggggggtggagataaaattgggggaagtccgtacattcttgatgcctttgtacagagcttatacttatatt |
326 |
Q |
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| T |
2472311 |
tacaaccgtcgctaacaaattttagtaaaggggggtacagataaaattgtgg-aagtccgtacattcttgatgcctttgtacagagcttatacttatatt |
2472213 |
T |
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| Q |
327 |
ggatttcttgaaacatctattgtacaatttcaaacacggttacggcagcaaagacgagaaagagcactcctccaatgtaggcaatgaccttcaaaagaaa |
426 |
Q |
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| T |
2472212 |
gcatttcttgaaacatctattgtacaatttcaaacacggttactgcagcaaagacgagaaagagcactcctccaatgtaggcaatgaccttcaaaagaaa |
2472113 |
T |
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| Q |
427 |
tgaaaatatattgcttttagtttggtgctacatgagggaacattccaaacagatacacaaatgcagttccatacttcgaatggcaagggcactatcaag |
525 |
Q |
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| T |
2472112 |
tgaaaatatattgcttttagtttgttgctacatgaggcaacattccaaacagatacacaaatgcagttccatgcttcaaat-gcaa-ggcactatcaag |
2472016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 2472633 - 2472557
Alignment:
| Q |
141 |
tgttaataacttactggacatagtttatgagggttacaatgaaagggagatcaactattactacaaatgatagtata |
217 |
Q |
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| T |
2472633 |
tgttaataacttactggacatagtttatgaggattacaatgaaaggtagatcaactattactacaaatgatagtata |
2472557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 2472929 - 2472874
Alignment:
| Q |
8 |
caatccagcagttagttctatatcagataaaaaatcattgactggtgtaacacgtg |
63 |
Q |
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| T |
2472929 |
caatccagcagttagttctatatcaaataaaaaatcattgactggtgtaacacgtg |
2472874 |
T |
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