View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115-Insertion-4 (Length: 341)
Name: NF3115-Insertion-4
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 50750936 - 50751269
Alignment:
| Q |
8 |
ctattagcttattataaataaaattgctggggtcatcttttggtaccataaatgttgcagttgcaatgccactaatttatgtatgtgggctctgttagct |
107 |
Q |
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| T |
50750936 |
ctattagcttattataaataaaattgctggggtcatcttttggtaccataaatgttgcagttgcaatgccactaatttatgtatgtgggctctattagct |
50751035 |
T |
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| Q |
108 |
tgttatatatatcttcacgggagaacattgcatggagtttacatcctcgcatatagggtgagggatacannnnnnnnngcagttaaaatacagagtactg |
207 |
Q |
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| T |
50751036 |
tgctatatatatcttcaagggagaacattgcatggagtttacatcctcgcatatagggcgagggataca-ttttttttgcagttaaaatacagagtactg |
50751134 |
T |
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| Q |
208 |
tcaaagacaaaataggaaaaacaaagttaagcaacacatattaatctatattatttgatcacaaggaatgtatatcatttttattggtcatcacgac-aa |
306 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || |
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| T |
50751135 |
tcaaagataaaataggaaaaacaaagttaagcaacacatattaatctatattatttgatcacaaggaatgtacatcatttttattggtcatcatgacaaa |
50751234 |
T |
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| Q |
307 |
gaaggaaaagttcagtttgatggtccatacattta |
341 |
Q |
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| T |
50751235 |
gaaggaaaatttcagtttgatggtccatacattta |
50751269 |
T |
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