View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3115-Insertion-5 (Length: 314)

Name: NF3115-Insertion-5
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3115-Insertion-5
NF3115-Insertion-5
[»] chr1 (12 HSPs)
chr1 (73-214)||(52690218-52690359)
chr1 (139-186)||(7013204-7013251)
chr1 (136-181)||(52689530-52689575)
chr1 (138-174)||(7015106-7015142)
chr1 (139-215)||(45886930-45887006)
chr1 (67-122)||(24313730-24313785)
chr1 (205-252)||(40198872-40198919)
chr1 (73-122)||(3375202-3375251)
chr1 (74-122)||(4325050-4325098)
chr1 (139-175)||(37919679-37919715)
chr1 (130-162)||(43514394-43514426)
chr1 (205-249)||(52690164-52690208)
[»] chr5 (5 HSPs)
chr5 (81-215)||(7732866-7733000)
chr5 (139-191)||(25994989-25995041)
chr5 (130-181)||(26092524-26092575)
chr5 (139-181)||(26093089-26093131)
chr5 (135-215)||(25994502-25994581)
[»] chr2 (1 HSPs)
chr2 (139-186)||(26129308-26129355)
[»] chr4 (8 HSPs)
chr4 (139-214)||(32303867-32303942)
chr4 (139-215)||(45549365-45549441)
chr4 (130-165)||(11661064-11661099)
chr4 (79-215)||(25954922-25955057)
chr4 (135-165)||(11660820-11660850)
chr4 (72-122)||(19487419-19487469)
chr4 (136-165)||(156100-156129)
chr4 (130-162)||(18487119-18487151)
[»] chr3 (5 HSPs)
chr3 (142-192)||(12783471-12783521)
chr3 (79-161)||(39708325-39708407)
chr3 (135-208)||(30478434-30478507)
chr3 (137-192)||(12784653-12784708)
chr3 (136-165)||(25226803-25226832)
[»] chr6 (3 HSPs)
chr6 (137-181)||(12488467-12488511)
chr6 (79-166)||(14486311-14486398)
chr6 (73-122)||(31779558-31779607)
[»] scaffold0027 (1 HSPs)
scaffold0027 (139-186)||(49181-49228)
[»] chr8 (4 HSPs)
chr8 (205-252)||(17944788-17944835)
chr8 (73-122)||(17944925-17944974)
chr8 (141-186)||(38077164-38077209)
chr8 (130-162)||(6254915-6254947)
[»] scaffold0012 (1 HSPs)
scaffold0012 (130-165)||(36285-36320)
[»] scaffold0010 (1 HSPs)
scaffold0010 (135-165)||(28600-28630)
[»] chr7 (2 HSPs)
chr7 (210-252)||(5899126-5899168)
chr7 (135-164)||(36653274-36653303)


Alignment Details
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 52690359 - 52690218
Alignment:
Q  73 gaattttgctcttctttcagcaagtttcgctcccacccaaccaaagtgacnnnnnnnccctcgcgttagttaactaacgcaagtgtaaaattaacataac 172  Q
    ||||| |||||||||  ||||||||||| |||||||||||| ||| ||||       | |  |||||||||||||||||||||||||||||||| |||||    
T  52690359 gaattctgctcttctcccagcaagtttcactcccacccaactaaactgacaaaaatactcatgcgttagttaactaacgcaagtgtaaaattaatataac 52690260  T
Q  173 ttaaaattttgtttcttttatacgtgcgtggcttaattcacg 214  Q
    |||||||||  ||| ||||| || || ||| ||||| |||||    
T  52690259 ttaaaatttcatttattttacacatgtgtgacttaagtcacg 52690218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 7013204 - 7013251
Alignment:
Q  139 tagttaactaacgcaagtgtaaaattaacataacttaaaattttgttt 186  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  7013204 tagttaactaacgcaagtgtaaaattaacatgacttaaaatttcgttt 7013251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 52689530 - 52689575
Alignment:
Q  136 cgttagttaactaacgcaagtgtaaaattaacataacttaaaattt 181  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||    
T  52689530 cgttagttaactaacgcaagtataaaattaacatgacttaaaattt 52689575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 7015142 - 7015106
Alignment:
Q  138 ttagttaactaacgcaagtgtaaaattaacataactt 174  Q
    |||||||||||||||||||||||||||||||||||||    
T  7015142 ttagttaactaacgcaagtgtaaaattaacataactt 7015106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 45886930 - 45887006
Alignment:
Q  139 tagttaactaacgcaagtgtaaaattaacataacttaaaattttgtttcttttatacgtgcgtggcttaattcacgc 215  Q
    ||||||||||||| | || |||||||||||| |||||||||||| ||| ||||| |  |||||| ||||| ||||||    
T  45886930 tagttaactaacgtaggtataaaattaacatgacttaaaattttattttttttacatatgcgtgacttaagtcacgc 45887006  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 24313730 - 24313785
Alignment:
Q  67 aattaggaattttgctcttctttcagcaagtttcgctcccacccaaccaaagtgac 122  Q
    ||||| ||||| |||||||||  ||||||||||||||||||||||| |||| ||||    
T  24313730 aattaagaattctgctcttctcccagcaagtttcgctcccacccaatcaaactgac 24313785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 40198872 - 40198919
Alignment:
Q  205 ttaattcacgcaggtgttataccccgtgtaagttaactcacgctagtt 252  Q
    |||| |||||||||||||| |||||| || ||||||||||||||||||    
T  40198872 ttaactcacgcaggtgttacaccccgagtgagttaactcacgctagtt 40198919  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 3375202 - 3375251
Alignment:
Q  73 gaattttgctcttctttcagcaagtttcgctcccacccaaccaaagtgac 122  Q
    ||||| |||||||||| || ||||||| ||||||||||||||||| ||||    
T  3375202 gaattctgctcttcttccaacaagttttgctcccacccaaccaaaatgac 3375251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 4325050 - 4325098
Alignment:
Q  74 aattttgctcttctttcagcaagtttcgctcccacccaaccaaagtgac 122  Q
    |||| |||||||||| || ||||||| ||||||||||||||||| ||||    
T  4325050 aattctgctcttcttccaacaagttttgctcccacccaaccaaaatgac 4325098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 37919679 - 37919715
Alignment:
Q  139 tagttaactaacgcaagtgtaaaattaacataactta 175  Q
    ||||||||||||| | |||||||||||||||||||||    
T  37919679 tagttaactaacgtatgtgtaaaattaacataactta 37919715  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 43514394 - 43514426
Alignment:
Q  130 ccctcgcgttagttaactaacgcaagtgtaaaa 162  Q
    |||| ||||||||||||||||||||||||||||    
T  43514394 cccttgcgttagttaactaacgcaagtgtaaaa 43514426  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 52690208 - 52690164
Alignment:
Q  205 ttaattcacgcaggtgttataccccgtgtaagttaactcacgcta 249  Q
    |||| |||||||||||||| |||||| || |||||||||||||||    
T  52690208 ttaactcacgcaggtgttacaccccgggtgagttaactcacgcta 52690164  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 215
Target Start/End: Complemental strand, 7733000 - 7732866
Alignment:
Q  81 ctcttctttcagcaagtttcgctcccacccaaccaaagtgacnnnnnnnccctcgcgttagttaactaacgcaagtgtaaaattaacataacttaaaatt 180  Q
    |||||||  ||||||||||| |||||||||| ||||| ||||       |  | ||||||||||| |||||||||| |||||||||||| | ||||||||    
T  7733000 ctcttctcccagcaagtttcactcccacccagccaaactgactaaaatacatttgcgttagttaattaacgcaagtataaaattaacatgaattaaaatt 7732901  T
Q  181 ttgtttcttttatacgtgcgtggcttaattcacgc 215  Q
    |||||| ||||| || |||||| ||||| ||||||    
T  7732900 ttgtttgttttacacatgcgtgacttaagtcacgc 7732866  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 25995041 - 25994989
Alignment:
Q  139 tagttaactaacgcaagtgtaaaattaacataacttaaaattttgtttctttt 191  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  25995041 tagttaactaacgcaagtgtaaaattaacatgacttaaaatttcgtttttttt 25994989  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 26092524 - 26092575
Alignment:
Q  130 ccctcgcgttagttaactaacgcaagtgtaaaattaacataacttaaaattt 181  Q
    |||| ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  26092524 cccttgcgctagttaactaacgcaagtgtaaaattaacatgacttaaaattt 26092575  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 26093131 - 26093089
Alignment:
Q  139 tagttaactaacgcaagtgtaaaattaacataacttaaaattt 181  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  26093131 tagttaaccaacgcaagtgtaaaattaacatgacttaaaattt 26093089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 25994502 - 25994581
Alignment:
Q  135 gcgttagttaactaacgcaagtgtaaaattaacataacttaaaattttgtttcttttatacgtgcgtggcttaattcacgc 215  Q
    ||||||||||||||| ||||||||||||||||||| || |||| |||  ||| ||||| || |||||| ||||| ||||||    
T  25994502 gcgttagttaactaatgcaagtgtaaaattaacatgacataaagtttcattt-ttttacacatgcgtgacttaagtcacgc 25994581  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 26129355 - 26129308
Alignment:
Q  139 tagttaactaacgcaagtgtaaaattaacataacttaaaattttgttt 186  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26129355 tagttaactaacgcaagtgtaaaattaacatgacttaaaattttgttt 26129308  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 32303867 - 32303942
Alignment:
Q  139 tagttaactaacgcaagtgtaaaattaacataacttaaaattttgtttcttttatacgtgcgtggcttaattcacg 214  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||| ||||| || | |||| ||||| |||||    
T  32303867 tagttaactaacgcaagtgtaaaattaacatgacttaaaatttcattttttttacacatacgtgacttaagtcacg 32303942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 45549441 - 45549365
Alignment:
Q  139 tagttaactaacgcaagtgtaaaattaacataacttaaaattttgtttcttttatacgtgcgtggcttaattcacgc 215  Q
    ||||||||||||  || |||||||||||||| ||||||||||| | || ||||| || |||||| ||||| ||||||    
T  45549441 tagttaactaacataaatgtaaaattaacattacttaaaatttcgattattttacacatgcgtgacttaaatcacgc 45549365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 11661099 - 11661064
Alignment:
Q  130 ccctcgcgttagttaactaacgcaagtgtaaaatta 165  Q
    |||| |||||||||||||||||||||||||||||||    
T  11661099 cccttgcgttagttaactaacgcaagtgtaaaatta 11661064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 25955057 - 25954922
Alignment:
Q  79 tgctcttctttcagcaagtttcgctcccacccaaccaaagtgacnnnnnnnccctcgcgttagttaactaacgcaagtgtaaaattaacataacttaaaa 178  Q
    |||||||||  |||||||||||||||||||| || |||| |||        |||  | ||||||||| ||| |||||||||||||| |||| ||||||||    
T  25955057 tgctcttctcccagcaagtttcgctcccacctaatcaaactgatcaaaatacccctgtgttagttaattaatgcaagtgtaaaatt-acatgacttaaaa 25954959  T
Q  179 ttttgtttcttttatacgtgcgtggcttaattcacgc 215  Q
    ||  |||| ||||| || |||||| ||||| ||||||    
T  25954958 ttacgtttgttttacacatgcgtgacttaaatcacgc 25954922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 11660820 - 11660850
Alignment:
Q  135 gcgttagttaactaacgcaagtgtaaaatta 165  Q
    |||||||||||||||||||||||||||||||    
T  11660820 gcgttagttaactaacgcaagtgtaaaatta 11660850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 19487419 - 19487469
Alignment:
Q  72 ggaattttgctcttctttcagcaagtttcgctcccacccaaccaaagtgac 122  Q
    |||||| |||||||||  |||||||||||||||||| ||||||||| ||||    
T  19487419 ggaattctgctcttctcccagcaagtttcgctcccatccaaccaaactgac 19487469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 165
Target Start/End: Original strand, 156100 - 156129
Alignment:
Q  136 cgttagttaactaacgcaagtgtaaaatta 165  Q
    ||||||||||||||||||||||||||||||    
T  156100 cgttagttaactaacgcaagtgtaaaatta 156129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 18487151 - 18487119
Alignment:
Q  130 ccctcgcgttagttaactaacgcaagtgtaaaa 162  Q
    |||| ||||||||||||||||||||||||||||    
T  18487151 cccttgcgttagttaactaacgcaagtgtaaaa 18487119  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 12783471 - 12783521
Alignment:
Q  142 ttaactaacgcaagtgtaaaattaacataacttaaaattttgtttctttta 192  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  12783471 ttaactaacgcaagtgtaaaattaacacaacttaaaatttcgtttgtttta 12783521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 39708407 - 39708325
Alignment:
Q  79 tgctcttctttcagcaagtttcgctcccacccaaccaaagtgacnnnnnnnccctcgcgttagttaactaacgcaagtgtaaa 161  Q
    |||||||||  |||||||||||||||||||||| ||||| ||||       ||| |||||||||||||||||||| |||||||    
T  39708407 tgctcttctcccagcaagtttcgctcccacccagccaaaatgaccaaaatacccacgcgttagttaactaacgcatgtgtaaa 39708325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 30478434 - 30478507
Alignment:
Q  135 gcgttagttaactaacgcaagtgtaaaattaacataacttaaaattttgtttcttttatacgtgcgtggcttaa 208  Q
    |||||| ||||||||||||| | |||||||||||| ||||||||||| |||  ||||| || |||||| |||||    
T  30478434 gcgttaattaactaacgcaactataaaattaacatgacttaaaatttcgttaattttacacatgcgtgacttaa 30478507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 12784708 - 12784653
Alignment:
Q  137 gttagttaactaacgcaagtgtaaaattaacataacttaaaattttgtttctttta 192  Q
    |||||||||| || ||||||||||||||||||  ||||||||||| |||| |||||    
T  12784708 gttagttaaccaatgcaagtgtaaaattaacacgacttaaaatttcgtttatttta 12784653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 165
Target Start/End: Original strand, 25226803 - 25226832
Alignment:
Q  136 cgttagttaactaacgcaagtgtaaaatta 165  Q
    ||||||||||||||||||||||||||||||    
T  25226803 cgttagttaactaacgcaagtgtaaaatta 25226832  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 12488467 - 12488511
Alignment:
Q  137 gttagttaactaacgcaagtgtaaaattaacataacttaaaattt 181  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||    
T  12488467 gttagttaactaacgtaagtgtaaaattaacatgacttaaaattt 12488511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 14486311 - 14486398
Alignment:
Q  79 tgctcttctttcagcaagtttcgctcccacccaaccaaagtgacnnnnnnnccctcgcgttagttaactaacgcaagtgtaaaattaa 166  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||        |   |||||||||||||||||||| |||||||||||    
T  14486311 tgctcttcttccagcaagtttcgctcccacccagccaaactgaccaaaataactatgcgttagttaactaacgcaaatgtaaaattaa 14486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 31779607 - 31779558
Alignment:
Q  73 gaattttgctcttctttcagcaagtttcgctcccacccaaccaaagtgac 122  Q
    ||||| |||||||||   ||||||||||||||||||||||||||| ||||    
T  31779607 gaattctgctcttctcctagcaagtttcgctcccacccaaccaaactgac 31779558  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 49181 - 49228
Alignment:
Q  139 tagttaactaacgcaagtgtaaaattaacataacttaaaattttgttt 186  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  49181 tagttaattaacgcaagtgtaaaattaacatgacttaaaatttcgttt 49228  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 17944835 - 17944788
Alignment:
Q  205 ttaattcacgcaggtgttataccccgtgtaagttaactcacgctagtt 252  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||||    
T  17944835 ttaactcacgcaggtgttataccccgcgtgagttaactcacgctagtt 17944788  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 17944974 - 17944925
Alignment:
Q  73 gaattttgctcttctttcagcaagtttcgctcccacccaaccaaagtgac 122  Q
    ||||| |||||||||  |||||||||||||||||||||||||||| ||||    
T  17944974 gaattctgctcttctcccagcaagtttcgctcccacccaaccaaactgac 17944925  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 38077209 - 38077164
Alignment:
Q  141 gttaactaacgcaagtgtaaaattaacataacttaaaattttgttt 186  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||    
T  38077209 gttaactaacgcaagtgtaaaattaacatgatttaaaatttcgttt 38077164  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 6254947 - 6254915
Alignment:
Q  130 ccctcgcgttagttaactaacgcaagtgtaaaa 162  Q
    |||| ||||||||||||||||||||||||||||    
T  6254947 cccttgcgttagttaactaacgcaagtgtaaaa 6254915  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 36320 - 36285
Alignment:
Q  130 ccctcgcgttagttaactaacgcaagtgtaaaatta 165  Q
    |||| |||||||||||||||||||||||||||||||    
T  36320 cccttgcgttagttaactaacgcaagtgtaaaatta 36285  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 28600 - 28630
Alignment:
Q  135 gcgttagttaactaacgcaagtgtaaaatta 165  Q
    |||||||||||||||||||||||||||||||    
T  28600 gcgttagttaactaacgcaagtgtaaaatta 28630  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 5899168 - 5899126
Alignment:
Q  210 tcacgcaggtgttataccccgtgtaagttaactcacgctagtt 252  Q
    ||||||||||||||| ||||| || ||||||||||||||||||    
T  5899168 tcacgcaggtgttattccccgcgtgagttaactcacgctagtt 5899126  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 36653274 - 36653303
Alignment:
Q  135 gcgttagttaactaacgcaagtgtaaaatt 164  Q
    ||||||||||||||||||||||||||||||    
T  36653274 gcgttagttaactaacgcaagtgtaaaatt 36653303  T

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