View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115-Insertion-6 (Length: 295)
Name: NF3115-Insertion-6
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 45289720 - 45289999
Alignment:
| Q |
8 |
ataagactaagaagaaagagagtgagacttgttcatagaaacaaaatatgacagtaaattatttcatcgagacaaaatcattattagacaaaagaagtat |
107 |
Q |
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| T |
45289720 |
ataagacaaagaagaaagagagtgagacttgttcatacaaacaaaatatgacaataaattatttcatcgagacaaaatcattattagacaaaagaagtat |
45289819 |
T |
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| Q |
108 |
aatttaaagatttccaatacatttatcaaactggggaaaagtttatgaattaattggttagatactttcaaaatgagtctaagaaaaattatatatagta |
207 |
Q |
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| T |
45289820 |
aatttaaagatttccaatacatttatcaaactggggaaaagtttatgaattaattggttatatactttcaaaatgagtctaagaaaaattata-----ta |
45289914 |
T |
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| Q |
208 |
tagtaatttgagtttgataagttgtatgccatttcttattattatcctataataataagacaattatatataaacattgtaaacgaac |
295 |
Q |
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| T |
45289915 |
tagtaatttgagtttgataagttgtatgccatttc---ttattatcctataaaaataagacaattatatataaacattgtaaatgaac |
45289999 |
T |
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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 12631362 - 12631448
Alignment:
| Q |
138 |
ctggggaaaagtttatgaatta--attggttagatactttcaaaatgagtctaagaaaaattatatatagtatagtaatttgagtttgataa |
227 |
Q |
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| T |
12631362 |
ctgggaaaaagtttatgaattattattggttagatactttcaaaatgagtctaagaaaaattatatata-----gtaatttgagtttgataa |
12631448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 12631445 - 12631484
Alignment:
| Q |
256 |
ataataataagacaattatatataaacattgtaaacgaac |
295 |
Q |
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| T |
12631445 |
ataataataagacaattatatataaacattgtaaacgaac |
12631484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 31607684 - 31607656
Alignment:
| Q |
267 |
acaattatatataaacattgtaaacgaac |
295 |
Q |
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| T |
31607684 |
acaattatatataaacattgtaaacgaac |
31607656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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