View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115R-Insertion-1 (Length: 960)
Name: NF3115R-Insertion-1
Description: NF3115R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115R-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 8 - 701
Target Start/End: Complemental strand, 22035051 - 22034359
Alignment:
| Q |
8 |
acctataagggtcatcgccagcctgtgttctcaccgggttgctcaaagtatcaaaatttgacatggatacgaatgtaggtagcaagtggaattggatgag |
107 |
Q |
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| T |
22035051 |
acctataagggtcatcaccagcctgtgttctcaccgggttgctcaaagtatcaaaatttgacatggatacaaatgtaggtagcaagtggaattggatgag |
22034952 |
T |
|
| Q |
108 |
cttgttcttttgttcatcgctaagcgaattgaggaagccaggtttgagacttgaaaaggaattgtcgtttggtgcaaacaaggttaaaccaccgttcgag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22034951 |
cttgttcttttgttcatcgctaagcgaattgaggaagccgggtttgagacttgaaaaggaattgtcgtttggtgcaaacaaggttaaaccaccgttcgag |
22034852 |
T |
|
| Q |
208 |
tttaagagttgagagttgatttgggtggacacttgtgtggtttggagaagacggattagtgtggtgaaccctccagcctttttgaggattctgataatgt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22034851 |
tttaagagttgagagttgatttgggtggacacttgtgtggtttggagaagacggattagcgtggtgaaccctccagcctttttgaggattctgataatgt |
22034752 |
T |
|
| Q |
308 |
cggttggggcggtatcggtcgaaggggccggagcaggtgatttctgggctaaagaggtggtggaagagnnnnnnncaattagaagaagtgtgaaagagag |
407 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
22034751 |
cggttggggcggtatcagtcgaaggggccggagcaggtgatttctgggctaaagtggtggtggaagagaaaaaaacaattagaagaagtgtgaaagagag |
22034652 |
T |
|
| Q |
408 |
gaatggatgtttcatcatcaccatattttgtagaaaggagttgaaaatggaagggtggtccttgaagtgaatactttgatgcatgtgggagtgatggagg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
22034651 |
gaatggatgtttcatcatcaccatattttgtagaaaggagttgaaaatggaagggtggtccttgaagtgaatgctttgatgcatgtaggagtgatggagg |
22034552 |
T |
|
| Q |
508 |
gtgggaaatatatggaatcatgaaagggnnnnnnnncctttgaagtttggtgaaatgtttctttagaaacttaaattgccagcatacatgtttatacatc |
607 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22034551 |
gtgggaaatatatggaatcatgaaaggg-tttttttcctttgaagtttggtgaaatgtttctttagaaacttaaattgccagcatacatgtttatacatc |
22034453 |
T |
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| Q |
608 |
aatgagaggtagtgtgtcaaatgctactttaatatattaggaagttggattttgcttggggaagcaggaaaaacagtgagataatgtatgtggt |
701 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22034452 |
aatgagaggtagtgtgtcaaatgctactttaatatattaggaagttggattttgcttggggaagcaggaaaaacagtgagataatgtatgtggt |
22034359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 724 - 960
Target Start/End: Complemental strand, 22034332 - 22034100
Alignment:
| Q |
724 |
agtgagagagggggcaaaataaaaagaaaaggtgattattattgtgtagcatttacttgtaaattgtaattctttcgaaatagcaaaacaatcaaagtag |
823 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22034332 |
agtgagagagggggcaaaataaaaagaaaaagtgattattattgtgtagcatttacttgtaaattgtaattctttcgaaatagcaaaacaatc-aagtag |
22034234 |
T |
|
| Q |
824 |
ttgcttcccaactcaagaaaacaagtcttcttggaattttacttttaaaatacattttgattttgat---tcttcatgatattattagggaatggggtgg |
920 |
Q |
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|||||| |||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | |
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| T |
22034233 |
ttgctt-ccaactcaag-aaacaagtc-tctt-gaattttacttttaaaatacattttgattttgatcaagtttcatgatattatta-ggaatggg--tg |
22034141 |
T |
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| Q |
921 |
agaaatctgatg-tgggtactggaataaactatggtgatgt |
960 |
Q |
| |
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|||||||||||| ||| |||| ||||||||| || |||||| |
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| T |
22034140 |
agaaatctgatgttggttacttgaataaactctgttgatgt |
22034100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 40050656 - 40050954
Alignment:
| Q |
19 |
tcatcgccagcctgtgttctcaccgggttgctcaaagtatcaaaatttgacatggatacgaatgtaggtagcaagtggaattggatgagcttgttctttt |
118 |
Q |
| |
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||||| ||||| |||||||| || |||||||| ||||||||||||||||| | | || |||| ||||| |||||||| || |||| ||||||| |
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| T |
40050656 |
tcatcaccagcttgtgttctaactgggttgcttaaagtatcaaaatttgagagtgcaacaaatgagggtagttcatggaattgaataagctcattctttt |
40050755 |
T |
|
| Q |
119 |
gttcatcgctaagcgaattgaggaagccaggtttgagacttgaaaaggaattgtcgtttggtgcaaacaaggttaaaccaccgttcgagtttaagagttg |
218 |
Q |
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||| ||| |||| |||||||| || ||||||||||| |||||||||||||||| ||||||||||| | |||| ||| ||| ||||||| |||||| |
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| T |
40050756 |
gttgatcattaagggaattgagaaaaccaggtttgagggttgaaaaggaattgtcatttggtgcaaagagtgttagtccattgtttgagtttaggagttg |
40050855 |
T |
|
| Q |
219 |
agagttgatttgggtggacacttgtgtggtttggagaagacggattagtgtggtgaaccctccagcctttttgaggattctgataatgtcggttggggc |
317 |
Q |
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| |||||||| |||| ||||| ||||||||||| || ||||| || |||||||| || || || ||||||||||||| |||||| || |||||||| |
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| T |
40050856 |
tgcattgatttgtgtggctacttgagtggtttggaggaggcggataagggtggtgaatccaccggcttttttgaggattcggataatatctgttggggc |
40050954 |
T |
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