View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3115R-Insertion-4 (Length: 528)
Name: NF3115R-Insertion-4
Description: NF3115R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115R-Insertion-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 34128089 - 34128292
Alignment:
| Q |
8 |
agtccctagtgtcttgtcaatacataacatcaagaactaatgagatggagatttgtatactttagagacatcttattatttttatatactttagagacta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
34128089 |
agtccctagtgtcttgtcaatacataacgtcaagaactaatgagatggagatttgtatactttagggacagcttattatttttatatactttagagacta |
34128188 |
T |
|
| Q |
108 |
agtcggagacaaagtgttactcgagggactaacttgaaggtttattcttattattgttgagtactttaaatatttttaacgttaaattaaatatttctct |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34128189 |
agtcggagacaaagtgttactcgagcgactaacttgaaggtttattcttattattgttgagtactttaaatatttttaacgttaaattaaatatttctca |
34128288 |
T |
|
| Q |
208 |
acaa |
211 |
Q |
| |
|
|||| |
|
|
| T |
34128289 |
acaa |
34128292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 335 - 514
Target Start/End: Original strand, 34129513 - 34129686
Alignment:
| Q |
335 |
tttgtttgtgtatgcatttatttacttacctcttcttcgcctgatgatgggaaaatgctttagttggcggcggtggtgaaagaggtatacgcctttgttg |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||| |||||| |||||||||| |
|
|
| T |
34129513 |
tttgtttgtgtatgcatttatttacttacctcttcacc------tgatgggaaaatgctttagttggcggcagtcgtgaaagcggtatatgcctttgttg |
34129606 |
T |
|
| Q |
435 |
acattataatgcaatgaatatatgctgctcaaatttggttgaagtgttgaactttggtatcatcatgaaacgtgcccgta |
514 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34129607 |
acattataatgcaatgaatatatgttgctcaaatttggttgaagtgttgaactttggtatcatcatgaaacgtgcccgta |
34129686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 34128360 - 34128403
Alignment:
| Q |
279 |
gatggtgtggttatcatacagatggaagcttagaattgaatgat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34128360 |
gatggtgtggttatcatacagatggaagcttagaattgaatgat |
34128403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 48558745 - 48558846
Alignment:
| Q |
84 |
tatttttatatactttagagactaagtcggagacaaagtgttactcgagggactaacttgaaggtttattcttattattgttgagtactttaaatatttt |
183 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| | | |||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
48558745 |
tatttttatatactttagggactaagtaggaaata--gtgttacttgagggactaacttgaaggtt-----------ttgttaagtactttaaatatttt |
48558831 |
T |
|
| Q |
184 |
taacgttaaattaaa |
198 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
48558832 |
taacattaaattaaa |
48558846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 36747817 - 36747773
Alignment:
| Q |
64 |
atactttagagacatcttattatttttatatactttagagactaa |
108 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
36747817 |
atactttagagacaacttattatacttatatactttagagactaa |
36747773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 39078020 - 39077974
Alignment:
| Q |
62 |
gtatactttagagacatcttattatttttatatactttagagactaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
39078020 |
gtatactttagagacaacttattatacttatataatttagagactaa |
39077974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University