View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115R-Insertion-5 (Length: 425)
Name: NF3115R-Insertion-5
Description: NF3115R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115R-Insertion-5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 194 - 425
Target Start/End: Complemental strand, 15303932 - 15303702
Alignment:
| Q |
194 |
catcaaattattccactccctttaggttacattatcattgacgtaatcaaacacgccgatttctctgaatgcttatacggtttaggggtacgtatatata |
293 |
Q |
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| T |
15303932 |
catcaaattattccactccctttaggttacatgatcattgacatgatcaaacacaccgatttctctgaatgcttatacgatttaggggtacgtatatata |
15303833 |
T |
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| Q |
294 |
tcacttctggttatatgcttcaattgttgcattcttttccttttgaacgaacactgttactgttattttctttgtttttcttgttttagatgtgtgctaa |
393 |
Q |
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| T |
15303832 |
tcacttctggttatatgcttcaattgttgcattcttttccttttgaactaa-actaacactgttattttctttgtttttcttgtcttagatgtgtgctaa |
15303734 |
T |
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| Q |
394 |
agaactcataattcctagtgatacccctgatc |
425 |
Q |
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| T |
15303733 |
agaactcataattcctagtgatacccctgatc |
15303702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 15304158 - 15304041
Alignment:
| Q |
9 |
ggaattggatcccgaaatatgcccctctctcgtaaacaagatctccaatgtcttgttcataactgaaaccatcgcaggaaagattttctatgttctttac |
108 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15304158 |
ggaattggactccgaaatatgcccctctctcgtaaacaagatctccaatgtcttgttcataactgaaaccatcgcaggaaagattttctatgttctttac |
15304059 |
T |
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| Q |
109 |
ttcactggagcaagtact |
126 |
Q |
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| T |
15304058 |
ttcactggagcgagtact |
15304041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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