View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_high_14 (Length: 417)
Name: NF3115_high_14
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 16993048 - 16992655
Alignment:
| Q |
1 |
agggtttggaatatgtttctggttctnnnnnnngaaagatgactgaagaaccttttgttgttcctgcagatgccgaggtaatttccatcgatgatgatga |
100 |
Q |
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| T |
16993048 |
agggtttggaatatgtttctggttctaaaaaaagaaagatgactgaagaaccttttgttgttcctgcagatgccgaggtaatttccatcgatgatgatga |
16992949 |
T |
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| Q |
101 |
atatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtctgagggtggtggtgaaagtggaggaagtggtgattttgatgctaaagat |
200 |
Q |
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| T |
16992948 |
atatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtctgagggtggtggtgaaagtggaggaa---gtgattttgatgctaaagat |
16992852 |
T |
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| Q |
201 |
ggaaagtttgttgatgaaaagtgtggggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtgaagaacactctgttgattctgatg |
300 |
Q |
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| T |
16992851 |
ggaaagtttgttgatgaaaagtgtggggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtgaagaacactctgttgattctgatc |
16992752 |
T |
|
| Q |
301 |
ctgataatgaagaagaagnnnnnnnnnnnnnnnnnnnngcagatgatgttgttaaaagtgatgaaagtggtggaattggtaggttttctgatcaaggtga |
400 |
Q |
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| T |
16992751 |
ctgataacgaagaagaag---aaaaagaaaaagaaaaagcagatgatgttgttaaaagtgatgaaagtgggggaattggtaggttttctgatcaaggtga |
16992655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 17008625 - 17008487
Alignment:
| Q |
186 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg---ggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---ag |
279 |
Q |
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| T |
17008625 |
tttgatgctaaagagggaaactttgttgagaaaaaatgtggtttggatgaagataacccgatttcaatatgttctgatgagtatagtgagagtgatgaag |
17008526 |
T |
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| Q |
280 |
aacactctgttgattctgatgctgataatgaagaagaag |
318 |
Q |
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| T |
17008525 |
aacactctgttggttttggtggtgataatgaagaagaag |
17008487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 10601253 - 10601293
Alignment:
| Q |
186 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg |
226 |
Q |
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| T |
10601253 |
tttgatgcgaaagatggaaagtttgttgacgaaaagtgtgg |
10601293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 16969275 - 16969214
Alignment:
| Q |
44 |
tgaagaaccttttgttgttcctgcagatgccgaggtaatttccatcgatgatgatgaatatg |
105 |
Q |
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| T |
16969275 |
tgaagaaccttttgtggttcctgaaggtgccaaggtaatttccattgaacatgatgattatg |
16969214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 193 - 318
Target Start/End: Original strand, 35262417 - 35262548
Alignment:
| Q |
193 |
ctaaagatggaaagtttgttgatgaaaagtgtg---gggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---agaacactc |
286 |
Q |
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|||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
35262417 |
ctaaagatggaaagtttgttgatgaaaattgtgagagggaacaagataacccggtttcgataagttcagatgagtatggtgaaagtgatgaagaacactt |
35262516 |
T |
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| Q |
287 |
tgttgattctgatgctgataatgaagaagaag |
318 |
Q |
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| T |
35262517 |
tgttgattctgatgctgataatgaagaagaag |
35262548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 35262302 - 35262418
Alignment:
| Q |
36 |
aagatgactgaagaaccttttgttgttcctgcagatgccgaggtaatttccatcgatgatgatgaatatgaagatgttggtgaagaagggttggaacata |
135 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| | || |||| |
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| T |
35262302 |
aagatgaacgaagaaccttttgttgttcctgcagatgctgaggtagtttccatcgatgatgatgaatatgaagatgttggtcaagaaggttcagagcata |
35262401 |
T |
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| Q |
136 |
gtgatgagaagatgtct |
152 |
Q |
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| T |
35262402 |
gtgatgacaagatgtct |
35262418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 35262596 - 35262642
Alignment:
| Q |
354 |
aaaagtgatgaaagtggtggaattggtaggttttctgatcaaggtga |
400 |
Q |
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| T |
35262596 |
aaaagtgatgaaagtgggggaattggtaggttttctgataaaggtga |
35262642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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