View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_high_17 (Length: 373)
Name: NF3115_high_17
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 31 - 351
Target Start/End: Complemental strand, 13311636 - 13311316
Alignment:
| Q |
31 |
cgattaagaatgaggaaatgggagagaattaaactatatatgtaacgtgttaaatctgtcaattttctgatgggtagaccatgtgtatataatacatgat |
130 |
Q |
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| T |
13311636 |
cgattaagaatgagaaaatgggagagaattaaactatatatgtaatgtgttaaatctgtcaattttctgatgggtagaccatgtgtatataatacatgat |
13311537 |
T |
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| Q |
131 |
acaccatgtggcacataaaatgtaacgtttcactaagagttactctcatttgttaataaaacttttatgattcaagatatttgtttcttcacttccggtt |
230 |
Q |
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| T |
13311536 |
acaccatgtggcacataaaatgtaacgtttcactaagagttactctcatttgttaaaaaaaactttatgattcaagagatttgtttcttcacttccggtt |
13311437 |
T |
|
| Q |
231 |
aagtaataacaatgaaataacacgtcttgatcaaatcttcgaaggtgtacaaccatttgaacccaaaaacattagaaaaccacacaaaacgtaagtttta |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13311436 |
aagtaataacaatgaaataacacgtcttgatcaaatcttcgaaggtgtacaaccatttgaacccaaaaacattagaaaaccacacaaaacgtaagtttta |
13311337 |
T |
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| Q |
331 |
aactccccaaaaacatataca |
351 |
Q |
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||||||||||||| ||||||| |
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| T |
13311336 |
aactccccaaaaatatataca |
13311316 |
T |
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