View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_high_2 (Length: 757)
Name: NF3115_high_2
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 196 - 744
Target Start/End: Original strand, 29036044 - 29036592
Alignment:
| Q |
196 |
taatgcaagttctgctgtagttgatgaaaatgaacaagagagcattgtacaatctaatgcaagttgtcccgcggttgacgaaaatgaacaagagagcgtt |
295 |
Q |
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| T |
29036044 |
taatgcaagttctcctgtagttgatgaaaatgaacaagagagcattgtacaatctaatgcaagttgtcccgcggttgacgaaaatgaacaagagagcgtt |
29036143 |
T |
|
| Q |
296 |
gtacaatctacaaacattgacgagttatcctccacaagtagtcctacttcttttggtggccataaatctccaacttcagaatcaggacttcaagatcaag |
395 |
Q |
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| T |
29036144 |
gtacaatctacaaacattgacgagttatcctccacaagtagtcctacttcttttggtggccataaatctccaacttcagaatcaggacttcaagatcaag |
29036243 |
T |
|
| Q |
396 |
aggttgacaaagattcatcacgagaagttgtaactgcttccggctctccgattactgatgatactgaatggaataacaaacaagctgacatgtcagtatc |
495 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29036244 |
aggctgacaaagattcatcacgagaagttgtaactgcttccggctctcctattactgatgatactgaatggaataacaaacaagctgacatgtcagtatc |
29036343 |
T |
|
| Q |
496 |
aaatgacggcgtagatgaaactcatcaaaccacttcagttgaagataataagaataataattcaagtgaggtggtgaaacctcaagccgaaacttcaagt |
595 |
Q |
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| T |
29036344 |
aaatgacggtgtagatgaaactcatcaaaccacttcagttgaagataataagaataataattcaagtgaggtggtgaaacctcaagccgaaacttcaagt |
29036443 |
T |
|
| Q |
596 |
aaaggtgaccaaatccatcctggtttgggtaagccctgtgctgagaatttgtttctcttggattcagtaattacttgtttgataatagcgcatcttgttt |
695 |
Q |
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| T |
29036444 |
aaaggtgaccaaatccatcctggtttgggtaagccctgtgctgagaagttgtttctcttggattcagtaattacttgtttgataatagtgcatcttgttt |
29036543 |
T |
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| Q |
696 |
tactttatattcatcttataatttccaggattggagatctccctctgtg |
744 |
Q |
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| T |
29036544 |
tactttatattcatcttataatttccaggattggagatctccctctgtg |
29036592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 29035706 - 29035991
Alignment:
| Q |
20 |
tatggtagtaccgctttggccccactcaaagtttgccaagaagaggaagtaaacatttgtcaatcacaaaaatccctggaggtcgaaattcgagaagatc |
119 |
Q |
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| T |
29035706 |
tatggtagtaccgctttggccccactcaaagtttgccaagaagaggaagtaaacatttgtcaatcacaaaaatccctggaggtcgaaattcaagaagatc |
29035805 |
T |
|
| Q |
120 |
ttttgcagcaggctggaaatgctgaagtaagagatgctagttcgtcactggaggttcaaaattcatctcacgaatctaatgcaagttctgctgtagttga |
219 |
Q |
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| T |
29035806 |
ttttgcagcaggctggaaatgctgaagtaagagatgctagttcgtcactggaggttcaaaattcatctcacgaatctaatgcaagttcccctgtagttga |
29035905 |
T |
|
| Q |
220 |
tgaaaatgaacaagagagcattgtacaatctaatgcaagttgtcccgcggttgacgaaaatgaacaagagagcgttgtacaatcta |
305 |
Q |
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| T |
29035906 |
tgaaaatgaactacagagcattgtacagtctaatgcaagctctcctgcagttgatgaaaatgaccaagagagcattgcacaatcta |
29035991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 29035986 - 29036099
Alignment:
| Q |
192 |
aatctaatgcaagttctgctgtagttgatgaaaatgaacaagagagcattgtacaatctaatgcaagttgtcccgcggttgacgaaaatgaacaagagag |
291 |
Q |
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||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||| |
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| T |
29035986 |
aatctaatgcaagttctcctgtactttatgaaaatgaacaagagagcattgtacaatttaatgcaagttctcctgtagttgatgaaaatgaacaagagag |
29036085 |
T |
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| Q |
292 |
cgttgtacaatcta |
305 |
Q |
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| T |
29036086 |
cattgtacaatcta |
29036099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 194 - 302
Target Start/End: Original strand, 29035934 - 29036042
Alignment:
| Q |
194 |
tctaatgcaagttctgctgtagttgatgaaaatgaacaagagagcattgtacaatctaatgcaagttgtcccgcggttgacgaaaatgaacaagagagcg |
293 |
Q |
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||||||||||| ||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||| | || | |||||||||||||||||| |
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| T |
29035934 |
tctaatgcaagctctcctgcagttgatgaaaatgaccaagagagcattgcacaatctaatgcaagttctcctgtactttatgaaaatgaacaagagagca |
29036033 |
T |
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| Q |
294 |
ttgtacaat |
302 |
Q |
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||||||||| |
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| T |
29036034 |
ttgtacaat |
29036042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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