View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_high_27 (Length: 294)
Name: NF3115_high_27
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 36309483 - 36309294
Alignment:
| Q |
1 |
ttgctatactatttcagataatcgatttagtgaagtcgcgaggaggtttccacaattagagaaggttgacatttcactttgctgcataacttcggtctcc |
100 |
Q |
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| T |
36309483 |
ttgctatactatttcagataaacaatttagtgaagtcgcaaggaggtttccacaattagagaaggttgacatttcactttgctgcataacttcggtctcc |
36309384 |
T |
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| Q |
101 |
cttgaagtgcttggtcgatcttgccctcttttgaagtcgcttgaatttggaaaatcgaactcgcttgtaaaatcaaggtttgtatattgt |
190 |
Q |
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| T |
36309383 |
cttgaagtgcttggtcgatcttgccctcttttgaagtcgcttgaatttggaaaatcaaagtcgcttgtaaaatcgaggtttgtatattgt |
36309294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 36325903 - 36325811
Alignment:
| Q |
56 |
ttagagaaggttgacatttcactttgctgcataacttcggtctcccttgaagtgcttggtcgatcttgccctcttttgaagtcgcttgaattt |
148 |
Q |
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| T |
36325903 |
ttagagaaggttgacatttcacattcttatctaactgaggtctctcttgaagcccttggtcgatcttgccctcttttgaaatcgcttaaattt |
36325811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 36309060 - 36309021
Alignment:
| Q |
238 |
tgattatatatggatggactttgatccttctcgggcattg |
277 |
Q |
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| T |
36309060 |
tgattatatatggatggactttgatccttctcgggcattg |
36309021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 36313486 - 36313432
Alignment:
| Q |
95 |
gtctcccttgaagtgcttggtcgatcttgccctcttttgaagtcgcttgaatttg |
149 |
Q |
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| T |
36313486 |
gtctctcttgaagcccttggtcgatcatgccctcttttgaaatcgcttaaatttg |
36313432 |
T |
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