View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_high_30 (Length: 283)
Name: NF3115_high_30
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 49 - 257
Target Start/End: Complemental strand, 36309803 - 36309584
Alignment:
| Q |
49 |
cgcaatggtggaacatttgcatggatcctctaatgtggcgctct--attcacatgcgtttgaaaatttgtgattcagtctttgattattataatgacgat |
146 |
Q |
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| T |
36309803 |
cgcaatggtggaacatttgcaaggatcctctaatgtggcgctctctattcacatgcgtttgaaaatttgtgattcagtctttgattattataatgacgat |
36309704 |
T |
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| Q |
147 |
aatac---------ttgttgcaaagctgttgaaagaagttgcgatcatttggaagacattgatattgagacatttggcaatgatgatctccttgaatgca |
237 |
Q |
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| T |
36309703 |
aatacggtgaagatttgttgcaaagctgttgaaagaagttgcgatcatttggaagacatcgatattgagacatttggcaatgatgatctccttgaatgca |
36309604 |
T |
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| Q |
238 |
tagctaaaaagtagttaaca |
257 |
Q |
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|||||||||||||||||||| |
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| T |
36309603 |
tagctaaaaagtagttaaca |
36309584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 36333982 - 36333932
Alignment:
| Q |
51 |
caatggtggaacatttgcatggatcctctaatgtggcgctctattcacatg |
101 |
Q |
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| T |
36333982 |
caatggtggaacatttgcaaggatcctctcatgtggcgcactattcgcatg |
36333932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 36309854 - 36309822
Alignment:
| Q |
18 |
cttcataggcttggtgcgtttgaaattgtgacg |
50 |
Q |
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| T |
36309854 |
cttcataggcttggtgcgtttgaaattgtgacg |
36309822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 30223140 - 30223187
Alignment:
| Q |
54 |
tggtggaacatttgcatggatcctctaatgtggcgctctattcacatg |
101 |
Q |
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| T |
30223140 |
tggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatg |
30223187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 30214867 - 30214935
Alignment:
| Q |
162 |
gctgttgaaagaagttgcgatcatttggaagacattgatattgagacatttggcaatgatgatctcctt |
230 |
Q |
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| T |
30214867 |
gctgttgaacgaagttgcggtcacttggaagacattgagatcgtgtctttttgcaatggtgatctcctt |
30214935 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 16053504 - 16053406
Alignment:
| Q |
152 |
ttgttgcaaagctgttgaaagaagttgcgatcatttggaagacattgatattgagacatttggcaatgatgatctccttgaatgcatagctaaaaagta |
250 |
Q |
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||||||||| ||| ||||| |||| ||| |||||||||||||||||||||||||| ||| |||||||||||| | ||| | ||||||||||| ||||| |
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| T |
16053504 |
ttgttgcaatgctattgaacgaagctgcaatcatttggaagacattgatattgagggattcggcaatgatgatattcttaattgcatagctaataagta |
16053406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 16644779 - 16644731
Alignment:
| Q |
53 |
atggtggaacatttgcatggatcctctaatgtggcgctctattcacatg |
101 |
Q |
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||||||||||||||||| ||| ||||| ||||||||| | ||||||||| |
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| T |
16644779 |
atggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg |
16644731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 17619140 - 17619092
Alignment:
| Q |
53 |
atggtggaacatttgcatggatcctctaatgtggcgctctattcacatg |
101 |
Q |
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| T |
17619140 |
atggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg |
17619092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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