View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_high_35 (Length: 252)
Name: NF3115_high_35
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_high_35 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8519815 - 8520039
Alignment:
| Q |
1 |
ccccttcattgtaattagattcaaagttttcagttttttatttacccaaaatgattgattgatccaaatcccaccattgtgatcgtttctcgtatcggga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8519815 |
ccccttcattgtaattagattcaaagttttcagttttttatttacccaaaatgattgattgatccaaatcccaccattgtgatcgtttctcgtatcggga |
8519914 |
T |
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| Q |
101 |
atttcatatgtaagttcaacctcaagcaaatgtgatgtgttaaagaaaggatcatcctcaacatctctaatttcacattcttgattgtggtgatcatggt |
200 |
Q |
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| T |
8519915 |
attttatatgtaagttcaacctcaggcaaatgtgatgtgttaaagaaaggatcatcctcaacatctctaatttcacattcttgattg---------tggt |
8520005 |
T |
|
| Q |
201 |
gatcaaaatgtgacgtgttacttgaaaattagac |
234 |
Q |
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| T |
8520006 |
gatcaaaatgtgatgtgttacttgaaaattagac |
8520039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 18759459 - 18759631
Alignment:
| Q |
8 |
attgtaattagattcaaagttttcagttttttatttacccaaaatgattgattgatccaaatcccaccattgtgatcgtttctcgtatcgggaatttcat |
107 |
Q |
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| T |
18759459 |
attgtaattggattcaaagttttcagttttttagttacccaaaatgattta-taatccaaatcccaccattgtgatcgtttctcatatcaggaat---at |
18759554 |
T |
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| Q |
108 |
atgtaa---gttcaacctcaagcaaatgt--gatgtgttaaagaaaggatcatcctcaacatctctaatttcacatt |
179 |
Q |
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| T |
18759555 |
gtgtaattggttcaacatcaagcaaatctaaggggtgttaaagaaaggatcatcctcaacatctctattttcacatt |
18759631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 20751278 - 20751094
Alignment:
| Q |
4 |
cttcattgtaattagattcaaagttttcagttttttatttacccaaaatgattgattgatccaaatcccaccattgtgatcgtttctcgtatcgggaatt |
103 |
Q |
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|||| |||||||| || || ||||||| ||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||| | |||| |
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| T |
20751278 |
cttccttgtaattcgagtcctagttttctgtttttttcttacccagaatgatggattgatccaaatcccatcattgtgatcgtttctcatatagagaata |
20751179 |
T |
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| Q |
104 |
tcatatgtaa---gttcaacctcaagcaaatgtgatgtgttaaagaaaggatcatcctcaacatctctaatttcacattcttgat |
185 |
Q |
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| T |
20751178 |
tcatctgtaatcggttcatcctcaagtgaatgtgatgtgttgaagaaaggatcatcctcaacatctctattttcacattcttgat |
20751094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 140152 - 139968
Alignment:
| Q |
4 |
cttcattgtaattagattcaaagttttcagttttttatttacccaaaatgattgattgatccaaatcccaccattgtgatcgtttctcgtatcgggaatt |
103 |
Q |
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|||| |||||||| || || ||||||| ||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||| | |||| |
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| T |
140152 |
cttccttgtaattcgagtcctagttttctgtttttttcttacccataatgatggattgatccaaatcccatcattgtgatcgtttctcatatagagaata |
140053 |
T |
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| Q |
104 |
tcatatgtaa---gttcaacctcaagcaaatgtgatgtgttaaagaaaggatcatcctcaacatctctaatttcacattcttgat |
185 |
Q |
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| T |
140052 |
tcatctgtaatcggttcatcctcaagtgaatgtgatgtgttgaagaaaggatcatcctcaacatttctattttcacattcttgat |
139968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 10982190 - 10982022
Alignment:
| Q |
12 |
taattagattcaaagttttcagttttttatttacccaaaatgattgattgatccaaatcccaccattgtgatcgtttctcgtatcgggaatttcatatgt |
111 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||| |||| ||||| || ||| |
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| T |
10982190 |
taattggattcaaagttttcagttttttagttacccaaaatgatt-tctaatccaaatctcaccattgtgatcgtttctcatatcaggaat---atgtgt |
10982095 |
T |
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| Q |
112 |
aa---gttcaacctcaagcaaatgt--gatgtgttaaagaaaggatcatcctcaacatctctaatttcacatt |
179 |
Q |
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| T |
10982094 |
aattggttcaacatcaagcaaatctaaggggtgttaaagaaaggatcatcctcaacatctctattttcacatt |
10982022 |
T |
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