View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3115_high_4 (Length: 684)

Name: NF3115_high_4
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3115_high_4
NF3115_high_4
[»] chr7 (10 HSPs)
chr7 (19-652)||(25026467-25027141)
chr7 (368-434)||(1706598-1706664)
chr7 (376-418)||(16706713-16706755)
chr7 (376-418)||(17680949-17680991)
chr7 (376-418)||(35016093-35016135)
chr7 (370-418)||(12287091-12287139)
chr7 (376-418)||(35015935-35015977)
chr7 (370-402)||(965259-965291)
chr7 (382-418)||(2485432-2485468)
chr7 (383-411)||(41853369-41853397)
[»] chr1 (12 HSPs)
chr1 (370-431)||(43728655-43728716)
chr1 (376-418)||(48379485-48379527)
chr1 (370-431)||(8259508-8259569)
chr1 (377-433)||(14624965-14625021)
chr1 (376-418)||(15342902-15342944)
chr1 (370-402)||(33016403-33016435)
chr1 (370-418)||(47024318-47024366)
chr1 (378-418)||(51776556-51776596)
chr1 (376-418)||(9694120-9694162)
chr1 (376-418)||(25389758-25389800)
chr1 (372-409)||(42693542-42693579)
chr1 (381-418)||(48941596-48941633)
[»] chr3 (4 HSPs)
chr3 (370-418)||(18090375-18090423)
chr3 (370-418)||(26952578-26952626)
chr3 (381-418)||(37333185-37333222)
chr3 (291-349)||(46940962-46941020)
[»] chr4 (12 HSPs)
chr4 (370-418)||(16529841-16529889)
chr4 (370-418)||(36755123-36755171)
chr4 (376-434)||(12832468-12832526)
chr4 (368-418)||(38476301-38476351)
chr4 (370-418)||(45549204-45549252)
chr4 (378-411)||(55693130-55693163)
chr4 (370-414)||(3534073-3534117)
chr4 (368-416)||(15024721-15024769)
chr4 (291-357)||(6866007-6866073)
chr4 (376-418)||(56192225-56192267)
chr4 (381-418)||(37996916-37996953)
chr4 (370-418)||(13205711-13205759)
[»] chr2 (6 HSPs)
chr2 (368-418)||(9032740-9032790)
chr2 (376-431)||(840329-840384)
chr2 (375-415)||(5732573-5732613)
chr2 (375-415)||(5803091-5803131)
chr2 (370-411)||(19494750-19494791)
chr2 (274-330)||(21560791-21560847)
[»] chr8 (5 HSPs)
chr8 (370-418)||(8845568-8845616)
chr8 (367-408)||(43417931-43417971)
chr8 (376-415)||(41407210-41407249)
chr8 (378-418)||(37127709-37127749)
chr8 (382-418)||(40216365-40216401)
[»] chr6 (7 HSPs)
chr6 (370-418)||(32183786-32183834)
chr6 (377-418)||(22746984-22747025)
chr6 (370-418)||(20969802-20969850)
chr6 (370-408)||(2912701-2912739)
chr6 (376-414)||(15135085-15135123)
chr6 (370-408)||(15489397-15489435)
chr6 (376-416)||(6838015-6838055)
[»] chr5 (6 HSPs)
chr5 (370-418)||(9622416-9622464)
chr5 (373-418)||(35377976-35378021)
chr5 (376-418)||(27903562-27903604)
chr5 (376-418)||(43100986-43101028)
chr5 (381-418)||(19279440-19279477)
chr5 (370-415)||(23418875-23418920)
[»] scaffold0355 (1 HSPs)
scaffold0355 (368-418)||(2796-2846)
[»] scaffold0001 (1 HSPs)
scaffold0001 (376-418)||(428296-428338)
[»] scaffold0009 (1 HSPs)
scaffold0009 (266-348)||(102967-103049)
[»] scaffold1940 (1 HSPs)
scaffold1940 (370-411)||(567-608)


Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 652
Target Start/End: Complemental strand, 25027141 - 25026467
Alignment:
Q  19 gtgggatatggaaatggtcccacaatttcttggggagtaaaatgtagttttagttttcatttgaattcctaaatatttggtgtattttgaataggtagtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25027141 gtgggatatggaaatggtcccacaatttcttggggagtaaaatgtagttttagttttcatttgaattcctaaatatttggtgtattttgaataggtagtc 25027042  T
Q  119 agagtcactcttggatgtaatttgtaattgcaatttggaagtgtattccaacttgttaaattttaaagtggaataattaaat------------------ 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      
T  25027041 agagtcactcttggatgtaatttgtaattgcaatttggaagtgtattccaacttgttaaattttaaagtggaataattaaataatcgatttcttctttaa 25026942  T
Q  201 ---gatatatggctatcaatttggcctatcacttaacaaaatttaaacatttgttaaaataaaaaatctttatgaggattagttttgcaatctaaaaaga 297  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026941 aatgatatatggctatcaatttggcctatcacttaacaaaatttaaacatttgttaaaataaaaaatctttatgaggattagttttgcaatctaaaaaga 25026842  T
Q  298 tctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaatctttgatatgttcctttttataatggaggtgcctatttaatgtggtgct 397  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||||||    
T  25026841 tctagcggcacaacttgttggttgtttatcttctattgacgtgtaagtaatctttgatatgttccttttcacaatggaggtgtctatttaatatggtgct 25026742  T
Q  398 aaatagatgaagcacccaccaatgcaaatggtcttaaca---tgatatt----------ttaaaatctc--gtctcctatcctcactcaatcaacataga 482  Q
    ||||| ||||||||||||||| | | ||||||| | | |   | | |||          ||||||||||  ||||||||||||||||||| |||||||||    
T  25026741 aaataaatgaagcacccaccattacgaatggtcatgatattttaaaatttctccctccattaaaatctcttgtctcctatcctcactcaagcaacataga 25026642  T
Q  483 gagaaacctaactccacttcaaaaattcttttca-----gaggcttatcaaccagtttggtgttaattaattagatttgaatttgaaataattactttgt 577  Q
    ||| ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026641 gaggaacctaactccacttcaaaaattcttttcatatttgaggcttatcaaccagtttggtgttaattaattagatttgaatttgaaataattactttgt 25026542  T
Q  578 gaagaggaatttgaaataattaatataagtatgataattatgacgacaatttgacaaatggttgtggtccctagc 652  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026541 gaagaggaatttgaaataattaatataagtatgataattatgacgacaatttgacaaatggttgtggtccctagc 25026467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 368 - 434
Target Start/End: Original strand, 1706598 - 1706664
Alignment:
Q  368 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtcttaa 434  Q
    ||||||| |||||||||||||||||||||  |||||||||||||||||||| ||  |||||||||||    
T  1706598 ataatgggggtgcctatttaatgtggtgccgaatagatgaagcacccaccattgttaatggtcttaa 1706664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 16706713 - 16706755
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  16706713 ggtgcctatttaatgtggtgctaaataggtgaagcacccacca 16706755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 17680949 - 17680991
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  17680949 ggtgcctatttaatgtggtgctaaataggtgaagcacccacca 17680991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 35016093 - 35016135
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  35016093 ggtgcctatttaatatggtgctaaatagatgaagcacccacca 35016135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 12287139 - 12287091
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  12287139 aatggaggtgcctatttaatgtggtgttaaataggtaaagcacccacca 12287091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 35015935 - 35015977
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||| |||||||||||||||||| |||||||||    
T  35015935 ggtgcctatttaatatggtgctaaatagatgaaacacccacca 35015977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 965291 - 965259
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaata 402  Q
    ||||| |||||||||||||||||||||||||||    
T  965291 aatgggggtgcctatttaatgtggtgctaaata 965259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 2485432 - 2485468
Alignment:
Q  382 tatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  2485432 tatttaatatggtgctaaatagatgaaggacccacca 2485468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 383 - 411
Target Start/End: Original strand, 41853369 - 41853397
Alignment:
Q  383 atttaatgtggtgctaaatagatgaagca 411  Q
    |||||||||||||||||||||||||||||    
T  41853369 atttaatgtggtgctaaatagatgaagca 41853397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 43728655 - 43728716
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtct 431  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  43728655 aatggaggtgcctatttaatgtggtgctaaatagatgaagcatccaccattgtaaatggtct 43728716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 48379527 - 48379485
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  48379527 ggtgcctatttaatgtggtgctaaataggtgaagcacccacca 48379485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 8259508 - 8259569
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtct 431  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||||| || | |||||||    
T  8259508 aatgggggtgcctatttaatatgatgctaaatagatgaagcacccaccattgtagatggtct 8259569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 14625021 - 14624965
Alignment:
Q  377 gtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtctta 433  Q
    |||||| |||||||||||||||||||| |||||||||||||| || | |||||||||    
T  14625021 gtgcctctttaatgtggtgctaaataggtgaagcacccaccattgtagatggtctta 14624965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 15342902 - 15342944
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  15342902 ggtgcttatttaatgtggtgctaaataggtgaagcacccacca 15342944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 33016435 - 33016403
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaata 402  Q
    |||||||||||||||||||||||||||||||||    
T  33016435 aatggaggtgcctatttaatgtggtgctaaata 33016403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 47024366 - 47024318
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||||||||||||||||||||||||  |||||||| | ||||||||||    
T  47024366 aatggaggtgcctatttaatgtggtgtgaaatagattacgcacccacca 47024318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 51776596 - 51776556
Alignment:
Q  378 tgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  51776596 tgcctatttaatgtggtgctaaataggtgaaacacccacca 51776556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 9694120 - 9694162
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||| | ||||||||||||| ||||||||||||||    
T  9694120 ggtgcctatttagtatggtgctaaataggtgaagcacccacca 9694162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 25389758 - 25389800
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||| ||||||||||||||||||||||| | ||||||||||||    
T  25389758 ggtgtctatttaatgtggtgctaaataggttaagcacccacca 25389800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 42693542 - 42693579
Alignment:
Q  372 tggaggtgcctatttaatgtggtgctaaatagatgaag 409  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  42693542 tggaggtgcctatttaatatggtgctaaataaatgaag 42693579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 48941596 - 48941633
Alignment:
Q  381 ctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  48941596 ctatttaatatggtgctaaatagatgaaacacccacca 48941633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 18090423 - 18090375
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18090423 aatggaggtgcctatttaatgtggtgctaaatagatgaagcatccacca 18090375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 26952578 - 26952626
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  26952578 aatggaggtgtctatttaatatggtgctaaataggtgaagcacccacca 26952626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 37333222 - 37333185
Alignment:
Q  381 ctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37333222 ctatttaatgtggtgctaaataggtgaagcacccacca 37333185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 46940962 - 46941020
Alignment:
Q  291 aaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaatc 349  Q
    ||||||| |||||||  ||||||||||| ||||||||||||||| | |||||| |||||    
T  46940962 aaaaagacctagcggtgcaacttgttgcctgtttaccttctattcatgtgtaattaatc 46941020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 16529889 - 16529841
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  16529889 aatgggggtgcctatttaatgtggtgctaaataggtgaagcacccacca 16529841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 36755171 - 36755123
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  36755171 aatggaggtgtctatttaatatggtgctaaatagatgaagcacccacca 36755123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 12832468 - 12832526
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtcttaa 434  Q
    |||||| ||||||||||||||||||||| |||||||||||||| || | ||||||||||    
T  12832468 ggtgccgatttaatgtggtgctaaataggtgaagcacccaccattgtagatggtcttaa 12832526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 38476301 - 38476351
Alignment:
Q  368 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  38476301 ataatgggggtgtctatttaatgtggtgctaaataggtgaagcacccacca 38476351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 45549204 - 45549252
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  45549204 aatggaggtgtctatttaatgtggtgctaaataggtgaaacacccacca 45549252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 411
Target Start/End: Original strand, 55693130 - 55693163
Alignment:
Q  378 tgcctatttaatgtggtgctaaatagatgaagca 411  Q
    ||||||||||||||||||||||||||||||||||    
T  55693130 tgcctatttaatgtggtgctaaatagatgaagca 55693163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 3534073 - 3534117
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcaccc 414  Q
    ||||| ||||||||||||||||| |||||||||| ||||||||||    
T  3534073 aatgggggtgcctatttaatgtgatgctaaataggtgaagcaccc 3534117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 15024721 - 15024769
Alignment:
Q  368 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccac 416  Q
    |||||||||||||||||||||| || |||||||||| ||||||| ||||    
T  15024721 ataatggaggtgcctatttaatatgatgctaaataggtgaagcatccac 15024769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 6866007 - 6866073
Alignment:
Q  291 aaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaatctttgatat 357  Q
    |||||| ||||||| ||||||||||||  | |||| |||||||| | |||||||||||| |||||||    
T  6866007 aaaaaggtctagcgacacaacttgttgtctttttatcttctattcatgtgtaagtaatcattgatat 6866073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 56192267 - 56192225
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||||| ||||||| | ||||||||||||    
T  56192267 ggtgcctatttaatgtggtgttaaataggtaaagcacccacca 56192225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 37996953 - 37996916
Alignment:
Q  381 ctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  37996953 ctatttaatgtggtgctaaatagaagaagcatccacca 37996916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 13205711 - 13205759
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||||| || |||||||||||||| |||||||| | ||||||||||||    
T  13205711 aatggagatgtctatttaatgtggtactaaataggttaagcacccacca 13205759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 9032740 - 9032790
Alignment:
Q  368 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  9032740 ataatagaggtgcctatttaatgtggtgttaaataggtgaagcacccacca 9032790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 431
Target Start/End: Original strand, 840329 - 840384
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccaccaatgcaaatggtct 431  Q
    |||||||||||||||||||||||| ||| |||||||||||||| ||  ||||||||    
T  840329 ggtgcctatttaatgtggtgctaagtaggtgaagcacccaccattgtgaatggtct 840384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 5732613 - 5732573
Alignment:
Q  375 aggtgcctatttaatgtggtgctaaatagatgaagcaccca 415  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  5732613 aggtgcctatttaatgtggtgctaaataggttaagcaccca 5732573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 415
Target Start/End: Complemental strand, 5803131 - 5803091
Alignment:
Q  375 aggtgcctatttaatgtggtgctaaatagatgaagcaccca 415  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  5803131 aggtgcctatttaatgtggtgctaaataggttaagcaccca 5803091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 19494791 - 19494750
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagca 411  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  19494791 aatgggggtgcctatttaatatggtactaaatagatgaagca 19494750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 21560791 - 21560847
Alignment:
Q  274 gattagttttgcaatctaaaaagatctagcggcacaacttgttgcttgtttaccttc 330  Q
    |||||||||| | |||||||||| | || ||||||||||||||||| |||| |||||    
T  21560791 gattagttttaccatctaaaaaggtttaacggcacaacttgttgctcgtttgccttc 21560847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 8845616 - 8845568
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  8845616 aatggaagtgcctatttaatgtggtgctaaataggtaaagcacccacca 8845568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 43417931 - 43417971
Alignment:
Q  367 tataatggaggtgcctatttaatgtggtgctaaatagatgaa 408  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  43417931 tataatggag-tgcctatttaatgtggtgctaaatagatgaa 43417971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 415
Target Start/End: Complemental strand, 41407249 - 41407210
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcaccca 415  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  41407249 ggtgcctatttaatatggtgttaaatagatgaagcaccca 41407210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 37127709 - 37127749
Alignment:
Q  378 tgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||| ||||||| | ||||||||||||    
T  37127709 tgcctatttaatgtggtgataaataggtaaagcacccacca 37127749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 40216401 - 40216365
Alignment:
Q  382 tatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  40216401 tatttaatgtggtgctaaataggtgaagcatccacca 40216365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 32183834 - 32183786
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||| |||||||||||||| || |||||||||||||||||||||||||    
T  32183834 aatgggggtgcctatttaatatgatgctaaatagatgaagcacccacca 32183786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 22747025 - 22746984
Alignment:
Q  377 gtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  22747025 gtgcctatttaatatagtgctaaatagatgaagcacccacca 22746984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 20969802 - 20969850
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||| |||||||| ||||||||||||||||||| ||||| ||||||||    
T  20969802 aatgggggtgcctacttaatgtggtgctaaataggtgaagtacccacca 20969850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 2912739 - 2912701
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaa 408  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  2912739 aatggaggtgcctatttaatgtggttctaaataggtgaa 2912701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 15135085 - 15135123
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcaccc 414  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  15135085 ggtgcctatttaatgtggtgctaaataggtgaagtaccc 15135123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 15489435 - 15489397
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaa 408  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  15489435 aatgggggtgcctatttaatgtggtgctaaataggtgaa 15489397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 6838015 - 6838055
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccac 416  Q
    |||||||||||||| || |||||||||| ||||||||||||    
T  6838015 ggtgcctatttaatatgatgctaaataggtgaagcacccac 6838055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 9622416 - 9622464
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  9622416 aatgggggtgtctatttaatgtggtgctaaataggtgaagcacccacca 9622464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 35377976 - 35378021
Alignment:
Q  373 ggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||||||||||||||| || || ||||||||||||||||||||||    
T  35377976 ggaggtgcctatttaatatgatgttaaatagatgaagcacccacca 35378021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 27903604 - 27903562
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||||| ||||||||||| |||| |||||||||    
T  27903604 ggtgcctatttaatgtagtgctaaataggtgaaacacccacca 27903562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 43100986 - 43101028
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    ||||| |||||||||||||||||||||| | ||||||||||||    
T  43100986 ggtgcttatttaatgtggtgctaaataggttaagcacccacca 43101028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 19279477 - 19279440
Alignment:
Q  381 ctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  19279477 ctatttaatgtgatgctaaataggtgaagcacccacca 19279440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 23418920 - 23418875
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagcaccca 415  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||    
T  23418920 aatgggggtgcctatttaatacggtgttaaatagatgaagcaccca 23418875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 2796 - 2846
Alignment:
Q  368 ataatggaggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||| ||||||||||||| ||||||||||||| |||| |||||||||    
T  2796 ataatggaagtgcctatttaatatggtgctaaataggtgaaacacccacca 2846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 428338 - 428296
Alignment:
Q  376 ggtgcctatttaatgtggtgctaaatagatgaagcacccacca 418  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  428338 ggtgcctatttaatctggtgctaaataggtgaagcacccacca 428296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 103049 - 102967
Alignment:
Q  266 tttatgaggattagttttgcaatctaaaaagatctagcggcacaacttgttgcttgtttaccttctattgacgtgtaagtaat 348  Q
    |||| ||||||| ||||||| ||| |||||| ||||||||| |||||||||||  | || ||||||||| | |||||| ||||    
T  103049 tttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataat 102967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 411
Target Start/End: Complemental strand, 608 - 567
Alignment:
Q  370 aatggaggtgcctatttaatgtggtgctaaatagatgaagca 411  Q
    ||||| |||||||||||||||||||| ||||||| |||||||    
T  608 aatgggggtgcctatttaatgtggtgttaaataggtgaagca 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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