View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_high_40 (Length: 229)
Name: NF3115_high_40
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16993038 - 16993256
Alignment:
| Q |
1 |
ttccaaacccttatcttcttcatcactctttctccgctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16993038 |
ttccaaacccttatcttcttcatcactctttctccgctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctc |
16993137 |
T |
|
| Q |
101 |
gaaacaccgaataacggtacattcttgctagaaaaaccagccatcacaaacaacaacaacnnnnnnnnnnccaaacaagaacaagaaacaacttgtattc |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16993138 |
gaaacaccgaataacggaacattcttgctagaaaaaccagccatcacaaacaacaacaac---aaaaaaaccaaacaagaacaagaaacaacttgtattc |
16993234 |
T |
|
| Q |
201 |
gtttaatgtctctttgtctgtg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
16993235 |
gtttaatgtctctttgtctgtg |
16993256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 16824899 - 16824980
Alignment:
| Q |
27 |
tctttctccgctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctcgaaacacc |
108 |
Q |
| |
|
|||||||||| |||||||||||| ||||| || | ||| |||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
16824899 |
tctttctccgttttgatgacccaacaagtggaacacaactaaacaatggaacatttttgctacgagttctgctagaaacacc |
16824980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 10600845 - 10600805
Alignment:
| Q |
12 |
tatcttcttcatcactctttctccgctttgatgacccacca |
52 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||| |
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| T |
10600845 |
tatcatcttcatcactctttctccgctttgatgaaccacca |
10600805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 16969404 - 16969450
Alignment:
| Q |
58 |
aagagaaccaaacaacggaacattcttgctacgagttctgctcgaaa |
104 |
Q |
| |
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|||| |||||||||| |||||||| ||||||||||||||||| |||| |
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|
| T |
16969404 |
aagacaaccaaacaatggaacatttttgctacgagttctgctagaaa |
16969450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 17008718 - 17008759
Alignment:
| Q |
57 |
aaagagaaccaaacaacggaacattcttgctacgagttctgc |
98 |
Q |
| |
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|||||||||||||||| || ||||| |||||||||||||||| |
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|
| T |
17008718 |
aaagagaaccaaacaatggcacatttttgctacgagttctgc |
17008759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 17008845 - 17008878
Alignment:
| Q |
64 |
accaaacaacggaacattcttgctacgagttctg |
97 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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| T |
17008845 |
accaaacaatggaacattcttgctacgagttctg |
17008878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 35262276 - 35262170
Alignment:
| Q |
2 |
tccaaacccttatcttcttcatcactctttctccgctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctcg |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35262276 |
tccaaccccttatcttcttcatcactctttctccgttttgatgaaccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctag |
35262177 |
T |
|
| Q |
102 |
aaacacc |
108 |
Q |
| |
|
||||||| |
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|
| T |
35262176 |
aaacacc |
35262170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 35262182 - 35262149
Alignment:
| Q |
126 |
tgctagaaaaaccagccatcacaaacaacaacaa |
159 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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|
| T |
35262182 |
tgctagaaacaccagccatcacaaacaacaacaa |
35262149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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