View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3115_high_42 (Length: 224)
Name: NF3115_high_42
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_high_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 33750622 - 33750434
Alignment:
| Q |
20 |
taagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtgga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33750622 |
taagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtgga |
33750523 |
T |
|
| Q |
120 |
aaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33750522 |
aaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgt |
33750434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 33719141 - 33718963
Alignment:
| Q |
28 |
tcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttc |
127 |
Q |
| |
|
|||||||| | |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
33719141 |
tcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccgtggtaaaggttc |
33719042 |
T |
|
| Q |
128 |
cgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
33719041 |
cgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtctcactcctct |
33718963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 33735814 - 33735634
Alignment:
| Q |
28 |
tcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttc |
127 |
Q |
| |
|
|||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
33735814 |
tcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttc |
33735715 |
T |
|
| Q |
128 |
cgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgt |
208 |
Q |
| |
|
| |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||||||||| |
|
|
| T |
33735714 |
caagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctctgt |
33735634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 33721160 - 33720980
Alignment:
| Q |
28 |
tcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttc |
127 |
Q |
| |
|
|||||||| | ||||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
33721160 |
tcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtggtaaaggttc |
33721061 |
T |
|
| Q |
128 |
cgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgt |
208 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
33721060 |
caagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctctgt |
33720980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
| Q |
154 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
206 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
6583102 |
gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct |
6583050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
| Q |
154 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct |
206 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
6568943 |
gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct |
6568891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 13409921 - 13409876
Alignment:
| Q |
163 |
atttcagcagcccatttaccccatggtctttgtctcactcctctgt |
208 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13409921 |
atttctgctgcccattttccccatggtctttgtctcactcctctgt |
13409876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 44331866 - 44331914
Alignment:
| Q |
160 |
cgaatttcagcagcccatttaccccatggtctttgtctcactcctctgt |
208 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
44331866 |
cgaatttctgctgcccattttccccatggtctctgtcttactcctctgt |
44331914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University