View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3115_high_9 (Length: 507)
Name: NF3115_high_9
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 501
Target Start/End: Original strand, 9222446 - 9222928
Alignment:
| Q |
19 |
accccaacattcatgccgtcatgaagagtgggtttcaccacaatttgaatgttgtcaccaaataaacgtatcaaatgagaaaagaattccaacacttgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9222446 |
accccaacattcatgccgtcatgaagagtgggtttcaccacaatttgaatgttgtcaccaaataaacgtatcaaatgagaaaagaattccaacacttgct |
9222545 |
T |
|
| Q |
119 |
gcaatgcaaaaaaggatgaaccataaaacaatatgaattagattatgaaccataagacaaattagannnnnnn--gttgataattgtgaattggatagtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
9222546 |
gcaatgcaaaaaaggatgaaccataaaacaatatgaattagattatgaaccataagacaaattatatttttttttgttgatgattgtgaattggatagtt |
9222645 |
T |
|
| Q |
217 |
tatgccacgcatattagggatgactaatctcggttgagaaacctgaccactttagtgtattctttccttccaaccacgtcttttatatcaatttaaagtt |
316 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9222646 |
tatgccacacatattacggatgactaatctcggtcgagaaaccagaccactttagtgtattctttccttccaaccacgtcttttatatcaatttaaagtt |
9222745 |
T |
|
| Q |
317 |
taaactcatatgatgagatagataaaaatttagaccatatagaattatgacggtgtctctattattttggatatttgaaaaatttagccaatacacaatt |
416 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9222746 |
taaactcatacgatgagatagataaaaatttagaccatatagaattatgacggtg--tctattattttggatatttgaaaaatttagccaatacaaaatt |
9222843 |
T |
|
| Q |
417 |
actttatgtgctaaaacacaaacttttataggtaaattattgttgccaccgtaatttatgtcactaacgagaatgcaaaaatatt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9222844 |
actttatgtgctaaaacacaaacttttataggtaaattattgttgccaccgtaatttatgtcactaaccagaatgcaaaaatatt |
9222928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University