View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3115_low_1 (Length: 809)
Name: NF3115_low_1
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 760; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 11 - 794
Target Start/End: Original strand, 42843018 - 42843801
Alignment:
| Q |
11 |
cacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843018 |
cacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaag |
42843117 |
T |
|
| Q |
111 |
cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42843118 |
cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaagctgaaagaga |
42843217 |
T |
|
| Q |
211 |
aggagttgcataaacaaaaagagctttcggaagaggagattttcaagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaaga |
310 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843218 |
aggagttgcataaacaaaaagtgctttcggaagaggagattttcaagttgaagattcaaattgagaagagtgagaatcagcatgataatgtgagcaaaga |
42843317 |
T |
|
| Q |
311 |
attgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagctt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843318 |
attgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagctt |
42843417 |
T |
|
| Q |
411 |
gttaatgtgcaggaagcattgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgatttggtgaaacagtgtgaggtag |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843418 |
gttaatgtgcaggaagcattgaatttgaaagagaaggagttgcaaaaacaaactgttaatgtctgcaaaattactgatttggtgaaacagtgtgaggtag |
42843517 |
T |
|
| Q |
511 |
ctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttga |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843518 |
ctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttga |
42843617 |
T |
|
| Q |
611 |
agcggcacaaaaagatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcattaggagagttggttagaatgcataagaaagag |
710 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843618 |
agcagcacaaaacaatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcattaggagagttggttagaatgcataagaaagag |
42843717 |
T |
|
| Q |
711 |
gtgcaaaaattgatgtctaaaatgcataattggcagactaagttctcttctgagaaaggtaagctgaattctaatattacaagt |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42843718 |
gtgcaaaaattgatgtctaaaatgcataattggcagactaagttctcttctgagaaaggtaagctgaattctaatattacaagt |
42843801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 42819106 - 42819350
Alignment:
| Q |
20 |
tttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctt |
119 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| ||||||||||||| ||| || || |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
42819106 |
tttattgtgggagattgacaatagaagttatgataagttgctcaaaaagtgcattgagaacgaggaagagctaagagttaccaatttaaagcttcaactt |
42819205 |
T |
|
| Q |
120 |
tcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgc |
219 |
Q |
| |
|
|||||| ||||| ||| || ||||||||||||||||||| || |||||| ||||||| || | ||||| ||||||| |||||||||| | ||| ||| |
|
|
| T |
42819206 |
tcggaaaaagaggttatcaacttgaaggttcaagttgagaacagcaagggtcagtttgataatgtgtgtgaagaattgaagctgaaagaggacgagatgc |
42819305 |
T |
|
| Q |
220 |
ataaacaaaaagagctttcggaagaggagattttcaagttgaaga |
264 |
Q |
| |
|
|||||||||| ||| |||| ||| | ||||||||||||| ||||| |
|
|
| T |
42819306 |
ataaacaaaaggaggtttcagaaaaagagattttcaagtagaaga |
42819350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 42834318 - 42834453
Alignment:
| Q |
36 |
gacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaata |
135 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| | || | || |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
42834318 |
gacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaata |
42834417 |
T |
|
| Q |
136 |
taaagttgaaggttcaagttgagagtagtgagggtc |
171 |
Q |
| |
|
||||||||||||| ||||||| || | ||||||||| |
|
|
| T |
42834418 |
taaagttgaaggtccaagttgggaatggtgagggtc |
42834453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 647
Target Start/End: Original strand, 42834652 - 42834782
Alignment:
| Q |
517 |
aaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttgaagcggc |
616 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| ||||| || ||||| ||||||||||||||| |||| |||||||||| |||||||| ||| ||| |
|
|
| T |
42834652 |
aaaagctcaagatatcaaaagtggaaattgaatctttaagaaatgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggc |
42834751 |
T |
|
| Q |
617 |
acaaaaagatattgctaaattagaattggag |
647 |
Q |
| |
|
|| || |||| ||||||| |||||||||| |
|
|
| T |
42834752 |
actggaaaatatggctaaatcagaattggag |
42834782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 656
Target Start/End: Original strand, 42819480 - 42819649
Alignment:
| Q |
487 |
atttggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatac |
586 |
Q |
| |
|
|||||||| ||||| ||| | |||| ||| |||||||||||||||| |||||||| || | |||||| |||||||| |||||||||| ||| || |
|
|
| T |
42819480 |
atttggtggaacagcttgatgcagctcatgcaaagctcaagatatcaacagatgaaaatgcaattttaagagaggaacttgggagtaagtcatctgagac |
42819579 |
T |
|
| Q |
587 |
tcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattca |
656 |
Q |
| |
|
| ||||||| || |||||||| ||| |||||| || |||| |||| || | |||||||||||| |||| |
|
|
| T |
42819580 |
ttatcaattggaaggtcagcttaaagtggcacaggaaaatatggctatatcaaaattggagttagtttca |
42819649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 42819262 - 42819342
Alignment:
| Q |
293 |
tgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaa |
373 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||| | ||| || |||||||||||||| ||| | || ||||||||||||| |
|
|
| T |
42819262 |
tgataatgtgtgtgaagaattgaagctgaaagaggacgagatgcataaacaaaaggaggtttcagaaaaagagattttcaa |
42819342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 42834459 - 42834527
Alignment:
| Q |
294 |
gataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaa |
362 |
Q |
| |
|
|||||||||||| |||||||||| || ||| |||| ||||||| |||||||| ||||||||| ||||| |
|
|
| T |
42834459 |
gataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaagaa |
42834527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 579 - 788
Target Start/End: Complemental strand, 7364018 - 7363809
Alignment:
| Q |
579 |
catgatactcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcat |
678 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7364018 |
catgatactcatctattgcaaagtcagcttaaagcggcactaaaaaatattgctaaattagaattggagttagattcaaggaaaaaagggatgcacttat |
7363919 |
T |
|
| Q |
679 |
taggagagttggttagaatgcataagaaagaggtgcaaaaattgatgtctaaaatgcataattggcagactaagttctcttctgagaaaggtaagctgaa |
778 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
7363918 |
taggagagttggttagaatgcataagaaagaggtgcaaaaattgatgtctgaaatgcataattggcagactaagttctcttctgagaaaggggagttgaa |
7363819 |
T |
|
| Q |
779 |
ttctaatatt |
788 |
Q |
| |
|
|| ||||||| |
|
|
| T |
7363818 |
ttttaatatt |
7363809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 12621799 - 12622024
Alignment:
| Q |
19 |
atttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagct |
118 |
Q |
| |
|
||||||| |||||||| ||||||| |||||||||| | |||||||||||||||| ||||| |||||||||||||| ||| | ||||| || |||||||| |
|
|
| T |
12621799 |
atttatcatgggagatggacaataaaagttatgatcaattgctcaaaaagttcaaagaaaatgaggaagagctaagagtttctaattttaaacttcagct |
12621898 |
T |
|
| Q |
119 |
ttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttg |
218 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||| ||||| ||| |||||| | ||||| | | |||| ||||||| |||||| || | ||| || |
|
|
| T |
12621899 |
ttcggaacaagagattataaagttgaaagttcaagctgagaatagcaagggtcagcttgataaggtgcgtgaagaattgaagctgaacaaggaagagctg |
12621998 |
T |
|
| Q |
219 |
cataaacaaaaagagctttcggaaga |
244 |
Q |
| |
|
||| ||||||||||||||||| |||| |
|
|
| T |
12621999 |
catgaacaaaaagagctttcgaaaga |
12622024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 335
Target Start/End: Original strand, 12627682 - 12627993
Alignment:
| Q |
24 |
tcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcgg |
123 |
Q |
| |
|
||||||||||| ||||| ||| ||||||| | ||||| |||||||| | |||||||||||||||||||| || ||||||| || ||||| ||||| |
|
|
| T |
12627682 |
tcgtgggagatggacaacggaacttatgatgagttgcttaaaaagtttaatgaaaaggaggaagagctaagaatttccaattttaaacttcaactttcaa |
12627781 |
T |
|
| Q |
124 |
aagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgcataa |
223 |
Q |
| |
|
|| |||| | |||||||||||||||| || |||||| |||||||||| | ||||| || | | || ||| ||| |||||||||| | ||| ||| ||| |
|
|
| T |
12627782 |
aacaagaaactataaagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaa |
12627881 |
T |
|
| Q |
224 |
acaaaaagagctttcggaagaggagattttcaagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaa |
323 |
Q |
| |
|
|| |||||||| ||| ||| | ||||||||||| ||||||||||| | ||||| |||| |||| ||| | ||||||| | || ||||||| |||||| |
|
|
| T |
12627882 |
actaaaagagcgttcagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgagcttcgtaatgtgcgagaacaattgaatctgaaa |
12627981 |
T |
|
| Q |
324 |
gagaaggagttg |
335 |
Q |
| |
|
||| |||||||| |
|
|
| T |
12627982 |
gaggaggagttg |
12627993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 255 - 454
Target Start/End: Original strand, 12627796 - 12627995
Alignment:
| Q |
255 |
aagttgaagattcaaatcgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaagagaaggagttgaataaacaaaaggagcttt |
354 |
Q |
| |
|
||||||||| || |||| ||||| |||||| | ||| |||||||||| || ||||| |||| ||||||||| | ||| || ||||| ||| |||| || |
|
|
| T |
12627796 |
aagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaaactaaaagagcgtt |
12627895 |
T |
|
| Q |
355 |
taaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtcagcttgttaatgtgcaggaagcattgaatttgaaagagaaggagttgca |
454 |
Q |
| |
|
| || ||||||||||||| ||||||||||| || ||| ||||| | | ||||| |||||||| ||| ||||||| |||||||| |||||||||| |
|
|
| T |
12627896 |
cagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgagcttcgtaatgtgcgagaacaattgaatctgaaagaggaggagttgca |
12627995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 30924849 - 30924717
Alignment:
| Q |
39 |
aatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataa |
138 |
Q |
| |
|
|||| |||||||||| | ||||| || |||||||| |||| |||||||||||| | ||| ||||||| || ||| ||||||| |||||||||| ||| | |
|
|
| T |
30924849 |
aataaaagttatgatgaattgctgaagaagttcattaaaaacgaggaagagctacgagtttccaatttgaaacttaagctttcagaagaagagattatca |
30924750 |
T |
|
| Q |
139 |
agttgaaggttcaagttgagagtagtgagggtc |
171 |
Q |
| |
|
|||||||| |||| ||||| |||||||||| |
|
|
| T |
30924749 |
agttgaagaatcaaaatgagaaaagtgagggtc |
30924717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 487 - 642
Target Start/End: Complemental strand, 30924602 - 30924447
Alignment:
| Q |
487 |
atttggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatac |
586 |
Q |
| |
|
|||||||| |||| | ||||||||||||||| | |||||||||||| | |||||| ||| | |||| ||||||||| ||||||| | | ||| || |
|
|
| T |
30924602 |
atttggtggaacaattggaggtagctaatgaacacctcaagatatcaaatgatgaagttgcaagattaagaaaggaacttgagagtaatttagctgagac |
30924503 |
T |
|
| Q |
587 |
tcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaat |
642 |
Q |
| |
|
||||||||||||| |||||||||| |||||| || || || |||||||||||| |
|
|
| T |
30924502 |
tcgtcaattgcaagaccagcttgaagtggcacaggaaaatgttactaaattagaat |
30924447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University