View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3115_low_11 (Length: 482)
Name: NF3115_low_11
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 22 - 472
Target Start/End: Original strand, 31999109 - 31999559
Alignment:
| Q |
22 |
tcctacatgtaacaaggatagcgcctacttccgtctaatcctgagagtgtctattaaactggtctacaaccaacttgagtccatgnnnnnnntgacatga |
121 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31999109 |
tcctacatgcaacaagaatagcgcctacttccgtctaatcccgagagtgtctattaaactggtctacaaccaacttgagtccatgaaaaaaatgacatga |
31999208 |
T |
|
| Q |
122 |
ttgaaactcaactccacaatccattctattccaaagccgcaagacgatttttaaatgttaatacactaaataccatctatcaaaagaggtctataacaga |
221 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31999209 |
ttgaaactcaactccacaatcccttctattccaaagccgcaagacgatttttaaatgttaatacactatataccatctatcaaaagaggtctataacaga |
31999308 |
T |
|
| Q |
222 |
attgacttttaattaatacctacaaactttttcactaacctgccccacattttacaaaagtctaaaactgactcccgtgaaaggtctgaccgaattgcca |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31999309 |
attgacttttaattaatacctacaaactttttcactaacctgccccacattttacgaaagtctaaaactgactcccgtgaaaggtctgaccgaattgcca |
31999408 |
T |
|
| Q |
322 |
attagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaagagaggctttgtccattaaggtaggaattgctctgccag |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31999409 |
attagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaagagaggctttgtccattaaggtaggaattgctctgccag |
31999508 |
T |
|
| Q |
422 |
ttttggccccaatttcttgacatgggttgccagctagttttggaccctttg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31999509 |
ttttggccccaatttcttgacatgggttgccagctagttttggaccctttg |
31999559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 299 - 472
Target Start/End: Original strand, 27487973 - 27488146
Alignment:
| Q |
299 |
tgaaaggtctgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaagagaggctttgtccat |
398 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||| ||| | ||||||| |||||||||||||| || || |||| ||| |||||| |||||||| |
|
|
| T |
27487973 |
tgaaaggtttgaccaaattgccaatttgctggtgccacattgaaacttgtcatagttctaccatcacttgttgtaacttgaaatgagagggattgtccat |
27488072 |
T |
|
| Q |
399 |
taaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctagttttggaccctttg |
472 |
Q |
| |
|
|||| || || ||||| ||||| ||||| ||||||||||||||||| |||||||| | |||| | ||||||||| |
|
|
| T |
27488073 |
taagataagagttgctttgccaattttgaccccaatttcttgacattggttgccatccagttcttgaccctttg |
27488146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 308 - 472
Target Start/End: Original strand, 27476724 - 27476888
Alignment:
| Q |
308 |
tgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaagagaggctttgtccattaaggtagg |
407 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||| | || |||| |||||||||||||| || || |||| ||| |||||| |||||||||||| || | |
|
|
| T |
27476724 |
tgaccaaattgccaatttgctggagccacattgaaactggtcatagttctaccatcacttgttgtaacttgaaatgagagggattgtccattaagataag |
27476823 |
T |
|
| Q |
408 |
aattgctctgccagttttggccccaatttcttgacatgggttgccagctagttttggaccctttg |
472 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||||||||| |||||||| | |||| | ||||||||| |
|
|
| T |
27476824 |
agttgctttgccaattttggccccaatttcttgacattggttgccaaccagttcttgaccctttg |
27476888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 471
Target Start/End: Complemental strand, 11592972 - 11592875
Alignment:
| Q |
374 |
actttaaaagagaggctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctagttttggacccttt |
471 |
Q |
| |
|
||||| || ||||| |||||||||| ||||| || ||||| ||||| ||||||||||||||||| ||||| |||||||| ||||||| || ||||| |
|
|
| T |
11592972 |
actttgaaggagagactttgtccatcaaggttagagttgctttgccaattttggccccaatttctagacattggttgccaattagtttttgaaccttt |
11592875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 30612429 - 30612355
Alignment:
| Q |
24 |
ctacatgtaacaaggatagcgcctacttccgtctaatcctgagagtgtctattaaactggtctacaaccaacttg |
98 |
Q |
| |
|
|||||| || |||| ||||||||||||| ||| | ||| |||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
30612429 |
ctacatttagcaagaatagcgcctactttcgtgttatcttgagagtgtcgattaaattggtctacgaccaacttg |
30612355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 2866212 - 2866281
Alignment:
| Q |
389 |
ctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctag |
458 |
Q |
| |
|
||||||||||||||||| || || || ||||| ||||| |||||||| |||||||||| |||||| |||| |
|
|
| T |
2866212 |
ctttgtccattaaggtaagagttactttgccaattttgcccccaattccttgacatggcttgccatctag |
2866281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 459
Target Start/End: Original strand, 3803415 - 3803516
Alignment:
| Q |
358 |
accatcaccagtggttactttaaaagagaggctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagcta |
457 |
Q |
| |
|
||||| ||||||||| ||| ||| || || ||||||||||| | || || ||||||||||| ||||| |||||||| |||||||||| |||||| ||| |
|
|
| T |
3803415 |
accattaccagtggtgactacaaatgaaagactttgtccattcaaataagagttgctctgccaattttgtccccaattccttgacatggcttgccatcta |
3803514 |
T |
|
| Q |
458 |
gt |
459 |
Q |
| |
|
|| |
|
|
| T |
3803515 |
gt |
3803516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 459
Target Start/End: Original strand, 3814084 - 3814185
Alignment:
| Q |
358 |
accatcaccagtggttactttaaaagagaggctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagcta |
457 |
Q |
| |
|
||||| ||||||||| ||| ||| || || ||||||||||| | || || ||||||||||| ||||| |||||||| |||||||||| |||||| ||| |
|
|
| T |
3814084 |
accattaccagtggtgactacaaatgaaagactttgtccattcaaataagagttgctctgccaattttgtccccaattccttgacatggcttgccatcta |
3814183 |
T |
|
| Q |
458 |
gt |
459 |
Q |
| |
|
|| |
|
|
| T |
3814184 |
gt |
3814185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University