View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3115_low_14 (Length: 423)

Name: NF3115_low_14
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3115_low_14
NF3115_low_14
[»] chr3 (48 HSPs)
chr3 (18-152)||(52567861-52567995)
chr3 (18-152)||(55267518-55267652)
chr3 (18-152)||(55205370-55205504)
chr3 (20-152)||(34691730-34691862)
chr3 (20-152)||(41805511-41805643)
chr3 (20-152)||(24700826-24700958)
chr3 (18-152)||(2267158-2267292)
chr3 (18-152)||(50998491-50998625)
chr3 (18-152)||(36136435-36136568)
chr3 (18-152)||(43571520-43571656)
chr3 (18-152)||(2645558-2645692)
chr3 (18-152)||(4002816-4002949)
chr3 (18-152)||(45098907-45099041)
chr3 (21-152)||(44490451-44490582)
chr3 (20-142)||(19440361-19440483)
chr3 (18-152)||(34645664-34645796)
chr3 (18-150)||(43478667-43478800)
chr3 (18-150)||(49217193-49217325)
chr3 (18-150)||(51693981-51694113)
chr3 (18-150)||(13894329-13894461)
chr3 (18-149)||(16484294-16484426)
chr3 (19-152)||(44223125-44223257)
chr3 (18-131)||(2950468-2950581)
chr3 (18-131)||(46406449-46406562)
chr3 (18-131)||(49138716-49138829)
chr3 (60-152)||(3493729-3493821)
chr3 (60-152)||(3497423-3497515)
chr3 (18-149)||(20374324-20374445)
chr3 (18-131)||(34051171-34051284)
chr3 (18-130)||(54391887-54391999)
chr3 (18-153)||(18441958-18442093)
chr3 (18-153)||(19487032-19487167)
chr3 (85-152)||(46345096-46345163)
chr3 (86-152)||(2430114-2430180)
chr3 (21-152)||(7247707-7247828)
chr3 (18-152)||(41579570-41579695)
chr3 (21-153)||(27096093-27096225)
chr3 (85-153)||(34470483-34470551)
chr3 (81-153)||(44929198-44929270)
chr3 (82-137)||(50457665-50457720)
chr3 (85-153)||(10051773-10051841)
chr3 (81-153)||(51017019-51017091)
chr3 (85-153)||(42321897-42321965)
chr3 (81-142)||(49275133-49275194)
chr3 (18-70)||(2432862-2432914)
chr3 (87-142)||(8397736-8397791)
chr3 (376-420)||(29711929-29711973)
chr3 (18-70)||(46345039-46345091)
[»] chr1 (35 HSPs)
chr1 (18-152)||(49924959-49925093)
chr1 (18-152)||(51271427-51271561)
chr1 (18-153)||(49398306-49398440)
chr1 (19-152)||(42570226-42570359)
chr1 (22-152)||(41803870-41804000)
chr1 (18-118)||(29437890-29437990)
chr1 (19-152)||(26633630-26633764)
chr1 (18-152)||(14172190-14172324)
chr1 (18-152)||(19161994-19162128)
chr1 (18-149)||(44598745-44598876)
chr1 (18-128)||(49429022-49429132)
chr1 (18-130)||(48228169-48228282)
chr1 (18-152)||(13633968-13634102)
chr1 (20-152)||(36911532-36911665)
chr1 (18-150)||(27485136-27485267)
chr1 (18-150)||(29760606-29760738)
chr1 (18-150)||(44336352-44336484)
chr1 (18-152)||(13148890-13149018)
chr1 (18-152)||(6437376-6437510)
chr1 (83-152)||(18974967-18975036)
chr1 (86-152)||(46141937-46142003)
chr1 (85-153)||(14440871-14440939)
chr1 (85-153)||(49260097-49260165)
chr1 (18-152)||(24362392-24362522)
chr1 (20-152)||(35524843-35524965)
chr1 (81-137)||(38043616-38043672)
chr1 (85-142)||(33285860-33285917)
chr1 (81-137)||(39855655-39855712)
chr1 (85-153)||(23344241-23344309)
chr1 (87-150)||(13974563-13974627)
chr1 (83-153)||(40531866-40531936)
chr1 (81-122)||(14771289-14771330)
chr1 (277-350)||(43097284-43097357)
chr1 (82-130)||(13285205-13285253)
chr1 (115-152)||(29437560-29437597)
[»] chr6 (17 HSPs)
chr6 (19-152)||(35019680-35019813)
chr6 (18-150)||(13616343-13616475)
chr6 (18-152)||(34801606-34801741)
chr6 (18-152)||(32691287-32691421)
chr6 (18-151)||(14124556-14124689)
chr6 (43-152)||(32026089-32026198)
chr6 (18-150)||(29076162-29076294)
chr6 (18-150)||(29109695-29109827)
chr6 (18-150)||(29111135-29111267)
chr6 (20-152)||(13404469-13404601)
chr6 (18-150)||(29068104-29068236)
chr6 (18-150)||(29083351-29083483)
chr6 (18-152)||(27641555-27641689)
chr6 (18-131)||(11693885-11693998)
chr6 (18-131)||(6206918-6207031)
chr6 (85-153)||(12398520-12398588)
chr6 (81-149)||(30763482-30763550)
[»] chr8 (22 HSPs)
chr8 (21-152)||(42605071-42605202)
chr8 (18-152)||(41855466-41855600)
chr8 (18-152)||(40703997-40704130)
chr8 (18-152)||(22550701-22550835)
chr8 (20-149)||(28168442-28168571)
chr8 (18-152)||(41016516-41016650)
chr8 (18-150)||(41276724-41276856)
chr8 (18-150)||(44052064-44052196)
chr8 (18-152)||(45066198-45066332)
chr8 (18-150)||(26455514-26455646)
chr8 (18-152)||(15030986-15031119)
chr8 (18-152)||(483918-484052)
chr8 (18-152)||(38872778-38872902)
chr8 (85-152)||(18438793-18438861)
chr8 (85-153)||(19241147-19241215)
chr8 (85-153)||(19314331-19314399)
chr8 (85-153)||(38032380-38032448)
chr8 (81-137)||(26488200-26488256)
chr8 (81-131)||(31170581-31170631)
chr8 (85-137)||(26488318-26488370)
chr8 (18-73)||(22519478-22519533)
chr8 (27-99)||(14120558-14120630)
[»] chr7 (34 HSPs)
chr7 (18-152)||(28112885-28113019)
chr7 (18-147)||(34142500-34142629)
chr7 (18-152)||(10524168-10524302)
chr7 (18-152)||(48194468-48194602)
chr7 (18-152)||(36392227-36392362)
chr7 (21-152)||(46596991-46597120)
chr7 (18-152)||(45257867-45258001)
chr7 (18-152)||(15309812-15309946)
chr7 (18-152)||(28977660-28977794)
chr7 (18-117)||(34139600-34139699)
chr7 (18-152)||(20566170-20566304)
chr7 (18-145)||(15070457-15070584)
chr7 (18-152)||(17840727-17840861)
chr7 (23-152)||(33603308-33603437)
chr7 (18-147)||(40590391-40590520)
chr7 (18-153)||(42503919-42504054)
chr7 (18-150)||(45361726-45361858)
chr7 (18-131)||(9365781-9365894)
chr7 (18-152)||(46860613-46860737)
chr7 (85-152)||(48314832-48314899)
chr7 (85-152)||(48272292-48272359)
chr7 (18-150)||(41623723-41623845)
chr7 (85-153)||(1641045-1641113)
chr7 (85-152)||(21185794-21185861)
chr7 (85-152)||(42684044-42684111)
chr7 (18-79)||(10225753-10225814)
chr7 (85-149)||(20876484-20876548)
chr7 (85-137)||(22292588-22292640)
chr7 (85-153)||(42736704-42736772)
chr7 (95-152)||(10225701-10225758)
chr7 (81-153)||(4231092-4231164)
chr7 (85-137)||(43349809-43349861)
chr7 (85-131)||(17184927-17184973)
chr7 (18-70)||(48314775-48314827)
[»] chr2 (28 HSPs)
chr2 (18-152)||(41497575-41497709)
chr2 (20-152)||(8268586-8268718)
chr2 (18-152)||(23786227-23786362)
chr2 (18-152)||(23409341-23409472)
chr2 (19-152)||(40675841-40675973)
chr2 (18-152)||(43493121-43493255)
chr2 (20-152)||(35493178-35493310)
chr2 (18-152)||(19470060-19470193)
chr2 (18-152)||(22003238-22003372)
chr2 (18-152)||(3935965-3936099)
chr2 (18-150)||(3943029-3943162)
chr2 (20-152)||(17426202-17426334)
chr2 (18-152)||(28476904-28477038)
chr2 (18-150)||(16583432-16583565)
chr2 (18-150)||(34639152-34639284)
chr2 (20-150)||(29090680-29090811)
chr2 (18-152)||(39798545-39798679)
chr2 (18-131)||(43984159-43984272)
chr2 (85-149)||(14181673-14181737)
chr2 (19-152)||(2917786-2917909)
chr2 (18-153)||(23719448-23719583)
chr2 (18-153)||(24107120-24107255)
chr2 (85-142)||(10358966-10359023)
chr2 (85-153)||(34520135-34520203)
chr2 (81-142)||(17537320-17537381)
chr2 (88-153)||(37311135-37311200)
chr2 (18-83)||(45435112-45435177)
chr2 (85-130)||(5422079-5422124)
[»] chr4 (33 HSPs)
chr4 (18-152)||(6280960-6281094)
chr4 (18-152)||(39590404-39590538)
chr4 (18-152)||(33383907-33384041)
chr4 (19-152)||(51426640-51426775)
chr4 (18-152)||(28083827-28083961)
chr4 (18-152)||(34528267-34528401)
chr4 (18-152)||(21015841-21015975)
chr4 (19-152)||(34151717-34151851)
chr4 (18-152)||(44558751-44558885)
chr4 (18-152)||(49572738-49572871)
chr4 (36-152)||(49422210-49422326)
chr4 (19-152)||(955894-956027)
chr4 (18-150)||(56140529-56140661)
chr4 (18-150)||(37868107-37868239)
chr4 (18-152)||(40352438-40352572)
chr4 (18-152)||(41793466-41793600)
chr4 (18-150)||(1044385-1044515)
chr4 (18-150)||(9491123-9491255)
chr4 (18-152)||(55799366-55799500)
chr4 (18-152)||(4783748-4783879)
chr4 (18-131)||(6175979-6176092)
chr4 (18-131)||(49096176-49096289)
chr4 (19-151)||(37959568-37959690)
chr4 (82-153)||(51026220-51026291)
chr4 (81-138)||(43887664-43887721)
chr4 (81-153)||(9718976-9719048)
chr4 (21-153)||(4909927-4910059)
chr4 (85-153)||(36774879-36774947)
chr4 (85-126)||(2774763-2774804)
chr4 (85-138)||(22438370-22438423)
chr4 (81-115)||(47312924-47312958)
chr4 (85-142)||(24076708-24076765)
chr4 (18-50)||(21410234-21410266)
[»] scaffold0176 (2 HSPs)
scaffold0176 (18-147)||(3425-3554)
scaffold0176 (18-152)||(494-624)
[»] chr5 (31 HSPs)
chr5 (18-152)||(541029-541160)
chr5 (20-152)||(34682361-34682493)
chr5 (18-152)||(25499724-25499858)
chr5 (18-152)||(5898-6032)
chr5 (18-152)||(8574823-8574957)
chr5 (18-137)||(27660042-27660161)
chr5 (18-152)||(11348338-11348472)
chr5 (18-151)||(8539381-8539513)
chr5 (18-152)||(19035340-19035474)
chr5 (18-150)||(41798921-41799054)
chr5 (18-152)||(38855548-38855682)
chr5 (18-152)||(11028841-11028975)
chr5 (24-150)||(35926466-35926592)
chr5 (27-152)||(41201839-41201964)
chr5 (18-152)||(18309894-18310018)
chr5 (83-153)||(20199995-20200065)
chr5 (18-152)||(30710997-30711130)
chr5 (18-152)||(3602996-3603119)
chr5 (81-153)||(6791887-6791959)
chr5 (18-109)||(30887256-30887348)
chr5 (18-123)||(1398706-1398811)
chr5 (84-153)||(36348798-36348867)
chr5 (88-153)||(40937158-40937223)
chr5 (85-153)||(1696460-1696528)
chr5 (85-137)||(41088303-41088355)
chr5 (21-58)||(35566958-35566995)
chr5 (85-153)||(1973094-1973162)
chr5 (85-137)||(7483927-7483979)
chr5 (85-153)||(23190678-23190746)
chr5 (18-70)||(20200068-20200120)
chr5 (116-152)||(35566919-35566955)
[»] scaffold0024 (3 HSPs)
scaffold0024 (277-415)||(21997-22130)
scaffold0024 (234-281)||(22161-22208)
scaffold0024 (159-190)||(22252-22283)
[»] scaffold0199 (1 HSPs)
scaffold0199 (18-152)||(10780-10914)
[»] scaffold0094 (1 HSPs)
scaffold0094 (18-152)||(41-175)
[»] scaffold0494 (1 HSPs)
scaffold0494 (18-152)||(5433-5567)
[»] scaffold0014 (1 HSPs)
scaffold0014 (20-152)||(84684-84816)
[»] scaffold0192 (1 HSPs)
scaffold0192 (85-152)||(16561-16628)
[»] scaffold0859 (1 HSPs)
scaffold0859 (85-153)||(2003-2071)
[»] scaffold0618 (2 HSPs)
scaffold0618 (85-152)||(4044-4114)
scaffold0618 (18-70)||(3987-4039)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 52567861 - 52567995
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  52567861 aggagtttccaaaactccattgttgcgttttttattctccttggtgcgattgtgagcaatttgaagtcattccaagtcaatttcaatcacaaaaacaagt 52567960  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||||||||| ||||||||||||||    
T  52567961 aagttttttgaatcatattgcattgttgttttgtg 52567995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 55267518 - 55267652
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55267518 aggagtttccaaaactccattgttgcgtttttgattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 55267617  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  55267618 aagttttttgaatcctattgcattgttgttttgtg 55267652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 55205370 - 55205504
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55205370 aggagtttccataactccattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaattttaatcacaaaaacaagt 55205469  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  55205470 aagttttttgaatcctattgcattgttgttttgtg 55205504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 34691730 - 34691862
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34691730 gagtttccaaaactccattgttgcgtttttgattctccttgctgcgattttgagcaatttgaagtcattccaagctaatttcaatcacaaaaacaagtaa 34691829  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    || || |||||| ||||| ||||||||||||||    
T  34691830 gtattctgaatcctattgcattgttgttttgtg 34691862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 41805643 - 41805511
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  41805643 gagtttctaaaactccattgttgtgttttttattctccttggtgcgattttgagcaatttgaagtcattccaaatcaatttcaatcacaaaaacaagtaa 41805544  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||| |||| ||||| ||||||||||||||    
T  41805543 gtttttttaatcctattgcattgttgttttgtg 41805511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 24700826 - 24700958
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  24700826 gagtttccaaaactccattgttgcgttttttcttctccaaggtgcgattttgagcaatttcaagtcattccaagccaaattcaatcaaaaaaacaagtaa 24700925  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||| ||||| ||||||||||||||    
T  24700926 gttttttgaatcttattgcattgttgttttgtg 24700958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 2267158 - 2267292
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  2267158 aggagtttccaaaactccattgttgcgtttttgattatccaaggtgcgattttgagtcatttgaagtcattccaagccaatttcaatcacaaaaacaagt 2267257  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  2267258 aagttttttgaatcctattgcattgttgctttgtg 2267292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 50998625 - 50998491
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  50998625 aggagtttccaaaactccattgttgcgtttttgattatccaaggtgcgattttgagtcatttgaagtcattccaagccaatttcaatcacaaaaacaagt 50998526  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  50998525 aagttttttgaatcctattgcattgttgctttgtg 50998491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 36136568 - 36136435
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||||||||||||||||| | ||| |||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  36136568 aggagtttccaaaactctattgttgcgtttat-attatccaaggtgcgattttgagtcatttgaagtcattccaagccaatttcaatcacaaaaacaagt 36136470  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  36136469 aagttttttgaatcctattgcattgttgctttgtg 36136435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 43571656 - 43571520
Alignment:
Q  18 aggagtttccaaaactctattgttgcgtttttt--attctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaa 115  Q
    |||||||| |||||||| |||||| ||||||||  |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  43571656 aggagttttcaaaactccattgttacgttttttttattctcctaggtgcgattttgagcaatttgaagccattccaagtcaatttcaatcacagaaacaa 43571557  T
Q  116 gtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  43571556 gtaagttttttgaatcctattgcattgttgttttgtg 43571520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 2645558 - 2645692
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||| ||||||||  ||||||||||||| ||||||||||| ||||||||||||||||    
T  2645558 aggagtttccaaaactccattgttgcgtttttaattatccaaggtgcaattttgagtcatttgaagtcattacaagccaattttaatcacaaaaacaagt 2645657  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||||||||||| ||||||    
T  2645658 aagttttttgaatcctattgtattgttgctttgtg 2645692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 4002816 - 4002949
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||||    
T  4002816 aggagtttccaaaactccattgttgcgtttttgattatccaaggtgcgattttgagtcatttgaagttattccaagccaattt-aatcacaaaaacaagt 4002914  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||| ||||| ||||| ||||||||||||||    
T  4002915 aagtttttagaatcctattgcattgttgttttgtg 4002949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 45098907 - 45099041
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  ||||||  |||||||||| |||||||| ||| ||||||||| |||||| ||||||||||||||||    
T  45098907 aggagtttccaaaactccattgttacgttttttgatctcctatgtgcgattttcagcaatttcaagccattccaagtcaattttaatcacaaaaacaagt 45099006  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  45099007 aagttttttgaatcctattgcattgttgttttgtg 45099041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 44490451 - 44490582
Alignment:
Q  21 agtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaag 120  Q
    |||||||||||||  |||||| ||||||||  |||||   ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  44490451 agtttccaaaacttcattgttacgtttttttatctccaatgtgtgattttgagcaatttcaagacattccaagccaatttcaatcacaaaaacaagtaag 44490550  T
Q  121 ttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||| ||||| ||||||||||||||    
T  44490551 ttttttgaatcttattgcattgttgttttgtg 44490582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 19440361 - 19440483
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||||| ||| |||| |||||||||||||||||||||||||    
T  19440361 gagtttccaaaactccattgttgcgttttttattctccttggtacgattttaaacaatttgaagtaatttcaagtcaatttcaatcacaaaaacaagtaa 19440460  T
Q  120 gttttttgaatcatattgtattg 142  Q
     |||| |||||| ||||| ||||    
T  19440461 cttttgtgaatcctattgcattg 19440483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 34645664 - 34645796
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||| ||| |||||| |||||||  ||||||| |||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  34645664 aggagtttccaaa-ctccattgttacgtttttggttctcctaggtgcgatttggagcaatttcaagccattccaagccaatttcgatcacaaaaacaagt 34645762  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| || |||||||||||||||||    
T  34645763 aagttttttgaatccta-tgtattgttgttttgtg 34645796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 43478800 - 43478667
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||  ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  43478800 aggagtttccaaaactccattgttacgttttttgatctccaaggtgcgattttgagctatttcaagccattccaagccaatttcaatcacaaaaacaagt 43478701  T
Q  118 aagtt-ttttgaatcatattgtattgttgttttg 150  Q
    ||||| |||| |||| ||||| ||||||||||||    
T  43478700 aagttttttttaatcctattgcattgttgttttg 43478667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 49217193 - 49217325
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  ||| |  ||||| ||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  49217193 aggagtttccaaaactccattgttacgttttttgatcttcaaggtgcaattttgagctatttcaagtcattccaaaccaatttcaatcacaaaaacaagt 49217292  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||| ||||| ||||||||||||    
T  49217293 aagtttttttaatcctattgcattgttgttttg 49217325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 51693981 - 51694113
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||| |||||||| |||||| | ||||||| |||||  ||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  51693981 aggagttttcaaaactccattgttacattttttaatctccaaggtgcgattttgagctatttcaagtcattccaagtcaatttcaatcacaaaaacaagt 51694080  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||  |||| ||||| ||||||||||||    
T  51694081 aagtttttctaatcttattgcattgttgttttg 51694113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 13894329 - 13894461
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||  |||||||  ||||   ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||    
T  13894329 aggagtttccaaaactccattgttatgttttttgatctcgaaggtgcgattttgagctatttcaagtcattccaagccaatttcaatcaccaaaacaagt 13894428  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    | ||||||| |||| ||||| ||||||||||||    
T  13894429 aggtttttttaatcctattgcattgttgttttg 13894461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 16484426 - 16484294
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaag- 116  Q
    ||||||||| ||||||| |||||| ||||||||  |||||  ||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||     
T  16484426 aggagtttcaaaaactccattgttacgttttttgatctccaaggtgcgattttgagctatttcaagtcattccaagccaatttcaataacaaaaacaagt 16484327  T
Q  117 taagttttttgaatcatattgtattgttgtttt 149  Q
    |||||||||| |||| ||||| |||||||||||    
T  16484326 taagtttttttaatcctattgcattgttgtttt 16484294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 44223125 - 44223257
Alignment:
Q  19 ggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    ||||||||||||||||||||||| | ||||| || |||||  |||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||||||    
T  44223125 ggagtttccaaaactctattgttacatttttgat-ctcctacgtgcaattttgagtaatttcaagtcatttcaaaccaatttcaatcacaaaaacaagta 44223223  T
Q  119 agttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||| |||| ||| | ||||||||||||||    
T  44223224 agtttttttaatcttatcgcattgttgttttgtg 44223257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 2950468 - 2950581
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| | |  ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  2950468 aggagtttccaaaactccattgttgcgtttttaatttttcaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 2950567  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  2950568 aagttttttgaatc 2950581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 46406562 - 46406449
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| | |  ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  46406562 aggagtttccaaaactccattgttgcgtttttaatttttcaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 46406463  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  46406462 aagttttttgaatc 46406449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 49138716 - 49138829
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  49138716 aggagtttccaaaactccattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 49138815  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  49138816 aagttttttgaatc 49138829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 3493729 - 3493821
Alignment:
Q  60 ggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||  |||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  3493729 ggtgcgattttgagtcatttgaagccattagaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtg 3493821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 3497423 - 3497515
Alignment:
Q  60 ggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||  |||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  3497423 ggtgcgattttgagtcatttgaagccattagaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgctttgtg 3497515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 20374324 - 20374445
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| |||||| | ||||||||||| |||          ||||||||||||||||||| ||||||| |||||    
T  20374324 aggagtttccaaaactccattgttgcgtttttcattctcttaggtgcgattttcagc----------cattccaagccaatttcaagcacaaaatcaagt 20374413  T
Q  118 aagttttttgaatcatattgtattgttgtttt 149  Q
    |||||||||||||| ||||| |||||||||||    
T  20374414 aagttttttgaatcctattgcattgttgtttt 20374445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 34051284 - 34051171
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||  |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  34051284 aggagtttccaaaacttcattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 34051185  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  34051184 aagttttttgaatc 34051171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 54391999 - 54391887
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  54391999 aggagtttccaaaactccattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 54391900  T
Q  118 aagttttttgaat 130  Q
    ||| |||||||||    
T  54391899 aagctttttgaat 54391887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 18442093 - 18441958
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||| ||||||  |||||||||||||| ||  |||| ||||||||||| | ||   | |||||||||||||||||||  || |||| || |||||    
T  18442093 aggagtttctaaaactgcattgttgcgtttttgatattcctaggtgcgattttcaccaggctaaagtcattccaagccaattctaagcacataatcaagt 18441994  T
Q  118 aagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||| ||||||||||||||| |||||||||||||||    
T  18441993 aagtgttttgaatcatattgcattgttgttttgtga 18441958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 19487167 - 19487032
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||| ||||||  |||||||||||||| ||  |||| ||||||||||| | ||   | |||||||||||||||||||  || |||| || |||||    
T  19487167 aggagtttctaaaactgcattgttgcgtttttgatattcctaggtgcgattttcaccaggctaaagtcattccaagccaattctaagcacataatcaagt 19487068  T
Q  118 aagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||| ||||||||||||||| |||||||||||||||    
T  19487067 aagtgttttgaatcatattgcattgttgttttgtga 19487032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 46345096 - 46345163
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  46345096 cattccaagccaatttcaatcacaaaaacaagtaagtttttttaatcttattgcattgttgttttgtg 46345163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 2430180 - 2430114
Alignment:
Q  86 attccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  2430180 attccaagctaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtg 2430114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 7247828 - 7247707
Alignment:
Q  21 agtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaag 120  Q
    |||||||||||||| ||||||||| ||||||||||| | |||||||||||  |          |||||||||| |||||||||||| ||||| |||||||    
T  7247828 agtttccaaaactccattgttgcggtttttattctcttaggtgcgattttctg----------tcattccaagtcaatttcaatcaaaaaaataagtaag 7247739  T
Q  121 ttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||| ||||| ||||||||||||||    
T  7247738 ttttttgaatcctattgcattgttgttttgtg 7247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 41579695 - 41579570
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||| |||| |||| |||||| | |||||||||||  ||          |||||||||||||||||||||||||||||||||    
T  41579695 aggagtttccaaaactccattgctgcggttttcattctcttaggtgcgattttctgc----------cattccaagccaatttcaatcacaaaaacaagt 41579606  T
Q  118 aag-ttttttgaatcatattgtattgttgttttgtg 152  Q
    ||| ||||||||||| ||||| ||| ||||||||||    
T  41579605 aagtttttttgaatcctattgcattattgttttgtg 41579570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 27096093 - 27096225
Alignment:
Q  21 agtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaag 120  Q
    |||||||||||||| |||||||||||||| ||  |||| ||||||||||| | |||  | ||| |||||||||||||||  ||  | |||| ||||||||    
T  27096093 agtttccaaaactccattgttgcgtttttgatattcctaggtgcgattttcaccaagcttaagccattccaagccaattctaaggaaaaaatcaagtaag 27096192  T
Q  121 ttttttgaatcatattgtattgttgttttgtga 153  Q
    | ||||||||| ||||| |||| ||| ||||||    
T  27096193 tgttttgaatcctattgcattgctgtgttgtga 27096225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 34470483 - 34470551
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||| | ||||||||    
T  34470483 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtga 34470551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 44929270 - 44929198
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |||||| ||| | ||||||||    
T  44929270 aagtcattccaagtcaatttcaagcacaaaatcaagtaagttttttgaatcctattgtgttgctattttgtga 44929198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 50457665 - 50457720
Alignment:
Q  82 agtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattg 137  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  50457665 agtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattg 50457720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 10051773 - 10051841
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||| ||||||||||||| ||||||| |||||||| |||||||||||||||| |||| | ||||||||    
T  10051773 cattctaagccaatttcaagcacaaaatcaagtaaggtttttgaatcatattgcattgctattttgtga 10051841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 51017091 - 51017019
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||||||| |||||||| | ||||||| ||||||||||||||||||| ||||| |||| | ||||||||    
T  51017091 aagtcattccaaaccaatttctagcacaaaatcaagtaagttttttgaatcctattgcattgatattttgtga 51017019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 42321897 - 42321965
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||| ||||||||||| || || |||| ||||||||||||||||||| ||||| |||||| ||||||||    
T  42321897 catttcaagccaatttaaagcaaaaaatcaagtaagttttttgaatcctattgcattgttattttgtga 42321965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 49275194 - 49275133
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattg 142  Q
    |||||||| |||||||||||||| |||||||  ||||||||||||| |||| ||||| ||||    
T  49275194 aagtcatttcaagccaatttcaagcacaaaattaagtaagtttttttaatcctattgcattg 49275133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 2432914 - 2432862
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgatttt 70  Q
    ||||||||||||||||| ||||||||| |||| |||||| | |||||||||||    
T  2432914 aggagtttccaaaactccattgttgcggttttcattctcttaggtgcgatttt 2432862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 8397736 - 8397791
Alignment:
Q  87 ttccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattg 142  Q
    ||||||||||||| ||| ||||||| ||||||||| ||||||||| ||||| ||||    
T  8397736 ttccaagccaattacaagcacaaaatcaagtaagtgttttgaatcctattgcattg 8397791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 29711973 - 29711929
Alignment:
Q  376 aattgacgaatcatctcaatctcattcccataatgatgatgtcca 420  Q
    ||||||||||| || |||||||||||||||||||| |||| ||||    
T  29711973 aattgacgaattatttcaatctcattcccataatggtgatatcca 29711929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 46345039 - 46345091
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgatttt 70  Q
    ||||||||||||||||  ||||||||| |||| |||||| | |||||||||||    
T  46345039 aggagtttccaaaacttcattgttgcggttttcattctcttaggtgcgatttt 46345091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 49924959 - 49925093
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49924959 aggagtttccaaaactccattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 49925058  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||| |||||||||| ||||| ||||||||||||||    
T  49925059 aagatttttgaatcctattgcattgttgttttgtg 49925093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 51271561 - 51271427
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51271561 aggagtttccaaaacttcattgttgcgttttttattctccttgctgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 51271462  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||| |||||| ||||| ||||||||||||||    
T  51271461 aagttttatgaatcctattgcattgttgttttgtg 51271427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 49398440 - 49398306
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49398440 aggagtttccaaaactc-attgttacgttttttattctcctaggtgctattttgagcaatttgaagtcattccaaaccaatttcaatcacaaaaacaagt 49398342  T
Q  118 aagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||||||||| ||||| |||||||||||||||    
T  49398341 aagttttttgaatcttattgcattgttgttttgtga 49398306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 42570226 - 42570359
Alignment:
Q  19 ggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  42570226 ggagtttccaaaactccattgttatgttttttattctcctaggtgcgattttgagcaatttgaagtcattcaaagtcaatttcaatcacaaaaacaagta 42570325  T
Q  119 agttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||| ||||| ||||||||||||||    
T  42570326 agttttttgaatcttattgcattgttgttttgtg 42570359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 41804000 - 41803870
Alignment:
Q  22 gtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaagt 121  Q
    |||| |||||||| |||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41804000 gttttcaaaactccattgttacattttttattctcctaggtgcaattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaataagtaagt 41803901  T
Q  122 tttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||| ||||| ||||||||||||||    
T  41803900 tttttgaatcctattgcattgttgttttgtg 41803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 29437990 - 29437890
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29437990 aggagtttccaaaactccattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaaaccaatttcaatcacaaaaacaagt 29437891  T
Q  118 a 118  Q
    |    
T  29437890 a 29437890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 26633630 - 26633764
Alignment:
Q  19 ggagtttccaaaactctattgttgcgtttt-ttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||| | |||| |||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26633630 ggagtttccaaaactccaatgttacgtttttttattctcctagatgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaact 26633729  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||| |||| ||||| ||||||||||||||    
T  26633730 aagtttttttaatcctattgcattgttgttttgtg 26633764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 14172190 - 14172324
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||| ||||||| ||||||||  |||||| ||||||||||| |||||||| ||  |||||||||||||||||||||||||||||| ||    
T  14172190 aggagtttccaaaactttattgttacgttttttgatctcctaggtgcgattttcagcaatttcaaaccattccaagccaatttcaatcacaaaaacaggt 14172289  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  14172290 aagttttttgaatcctattgcattgttgttttgtg 14172324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 19161994 - 19162128
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||| ||||||||| |||  |||||||||||||   |||||||| |||||||||||||||||||||||||||||||||    
T  19161994 aggagtttccaaaactccattgttgcattttttattatccaaggtgcgattttgaatcatttgaagccattccaagccaatttcaatcacaaaaacaagt 19162093  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||| ||| ||||||    
T  19162094 aagttttttgaatcctattgcatttttgctttgtg 19162128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 44598876 - 44598745
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||| ||||||| |||||| ||||||||  |||||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  44598876 aggagtttcaaaaactccattgttacgttttttgatctccaaggtgcgattttgagctatttcaagtcattccaagccaatttcaataacaaaaacaagt 44598777  T
Q  118 aagttttttgaatcatattgtattgttgtttt 149  Q
    ||||||||| |||| ||||| |||||||||||    
T  44598776 aagtttttttaatcctattgcattgttgtttt 44598745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 49429132 - 49429022
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||||||| |||  ||||||||||| ||  |||||||||||||| |||||||||||||||||||||||||||    
T  49429132 aggagtttccaaaactccattgttgcgttttttattatccaaggtgcgattttaagtcatttgaagtcattctaagccaatttcaatcacaaaaacaagt 49429033  T
Q  118 aagttttttga 128  Q
    |||||||||||    
T  49429032 aagttttttga 49429022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 48228282 - 48228169
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcaca-aaaacaag 116  Q
    ||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||  |||||||| |||||||||||||||||||||||| ||||||||    
T  48228282 aggagtttccaaaactccattgttgcgttttttattatccaaggtgcgattttgagtcatttgaaggcattccaagccaatttcaatcacaaaaaacaag 48228183  T
Q  117 taagttttttgaat 130  Q
    ||||||||||||||    
T  48228182 taagttttttgaat 48228169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 13633968 - 13634102
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| | | |||  | |||||||||||   |||||||| |||| ||||||||||||||||||||||||||||    
T  13633968 aggagtttccaaaactccattgttgcgtttttgagtatccaagttgcgattttgaatcatttgaagacattacaagccaatttcaatcacaaaaacaagt 13634067  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  13634068 aagttttttgaatcctattgcattgttgctttgtg 13634102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 36911665 - 36911532
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttat-tctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    ||||||||||||||| |||||| | ||||||   |||||| ||||||||||| |||||||| ||| |||| ||||||||||||||||||||||||| |||    
T  36911665 gagtttccaaaactccattgttacatttttttgatctcctaggtgcgattttcagcaatttcaagccatttcaagccaatttcaatcacaaaaacaggta 36911566  T
Q  119 agttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||| ||||| ||||||||||||||    
T  36911565 agttttttgaatcttattgcattgttgttttgtg 36911532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 27485136 - 27485267
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||   |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  27485136 aggagtttccaaaactccattgttacgttttttgatctccaatgtgcgattttgagctatttcaagccattccaagccaatttcaatcacaaaaacaagt 27485235  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    || |||||| |||| ||||| ||||||||||||    
T  27485236 aa-tttttttaatcctattgcattgttgttttg 27485267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 29760606 - 29760738
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||| |||||||| |||||| ||||||||  |||||  ||||||||||||||  |||| ||||||||| |||||||||||||||||||||| ||||    
T  29760606 aggagttttcaaaactccattgttacgtttttttatctccaaggtgcgattttgagttatttcaagtcattctaagccaatttcaatcacaaaaagaagt 29760705  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||| ||||| ||||||||||||    
T  29760706 aagtttttttaatcctattgcattgttgttttg 29760738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 44336352 - 44336484
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||   |||| ||||||||  |||| ||| |||||||||||||||||||||||||||||||||    
T  44336352 aggagtttccaaaactcaattgttacgttttttgatctccaatgtgcaattttgagttatttcaagccattccaagccaatttcaatcacaaaaacaagt 44336451  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||| ||||| ||||||||||||    
T  44336452 aagtttttttaatcctattgcattgttgttttg 44336484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 13149018 - 13148890
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||  ||||||  ||||||| ||| |||||||||||||      ||||||||| |||||||||||||||||||||||||    
T  13149018 aggagtttccaaaactccattgttatgtttttggttctcctaggtacgattttgagcaa------gtcattccaggccaatttcaatcacaaaaacaagt 13148925  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||| |||| ||||| || |||||||||||    
T  13148924 aagtttttttaatcctattgcatcgttgttttgtg 13148890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 6437510 - 6437376
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||| ||||||| ||||||||| |||| |||||| | |||||||||||  |  |||  ||| |||| |||| |||||||||||||||||||||||    
T  6437510 aggagtttctaaaactccattgttgcggttttcattctcttaggtgcgattttctgtcattccaagccattacaagtcaatttcaatcacaaaaacaagt 6437411  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    || ||||||||||| ||||| ||||||||||||||    
T  6437410 aaattttttgaatcctattgcattgttgttttgtg 6437376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 18975036 - 18974967
Alignment:
Q  83 gtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  18975036 gtcattccaagccaatttcgatcacaaaaacaagtaagttttttgaatcctattgcattgttgttttgtg 18974967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 46141937 - 46142003
Alignment:
Q  86 attccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  46141937 attccaagccaatttcaatcacaaaaacaagtgagttttttgaatcctattgcattgttgttttgtg 46142003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 14440939 - 14440871
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||| ||||||||    
T  14440939 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgttattttgtga 14440871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 49260097 - 49260165
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| | ||||||||    
T  49260097 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcatattgcattgctattttgtga 49260165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 24362392 - 24362522
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||||   |||| ||| |||  |||||||  |||||||||| ||| |||| ||| |||||||| | |||||||||| |||||||        
T  24362392 aggagtttccaaaactcctctgttacgtgtttggttctcctatgtgcgattttcagccatttcaagccattccaatctaatttcaatcgcaaaaac---- 24362487  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  24362488 aagttttttgaatcctattgcattgttgttttgtg 24362522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 35524843 - 35524965
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||| ||||||| |||||| ||||||||  |||||  ||||||||||||||||||||          ||||||||||| ||||||||||| || |||    
T  35524843 gagtttcaaaaactccattgttacgttttttgatctccaaggtgcgattttgagcaattt----------caagccaatttaaatcacaaaaataattaa 35524932  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||| ||||| |||| |||||||||    
T  35524933 gttttttgaatcctattgcattgctgttttgtg 35524965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 38043616 - 38043672
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattg 137  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  38043616 aagtcattccaagccaatttcaaacacaaaatcaagtaagttttttgaatcctattg 38043672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 33285860 - 33285917
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattg 142  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||    
T  33285860 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattg 33285917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 39855655 - 39855712
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaa-caagtaagttttttgaatcatattg 137  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  39855655 aagtcattccaagccaatttcaagcacaaaaatcaagtaagttttttgaatcctattg 39855712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 23344309 - 23344241
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||  ||||| |||| | ||||||||    
T  23344309 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaattctattgcattgctattttgtga 23344241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 13974627 - 13974563
Alignment:
Q  87 ttccaagccaatttcaatcacaaaaacaagtaagtttttt-gaatcatattgtattgttgttttg 150  Q
    ||||||| || ||||||||||||||| || |||||||||| ||||||||||| ||||||||||||    
T  13974627 ttccaagtcagtttcaatcacaaaaataaataagtttttttgaatcatattgcattgttgttttg 13974563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 40531866 - 40531936
Alignment:
Q  83 gtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||| | ||||| ||||| || |||| ||||||||||||||||||||||||| |||| | ||||||||    
T  40531866 gtcattctacgccaaattcaagcataaaatcaagtaagttttttgaatcatattgcattgctattttgtga 40531936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 14771289 - 14771330
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagtt 122  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  14771289 aagtcattccaagccaatttcaagcacaaaatcaagtaagtt 14771330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 43097357 - 43097284
Alignment:
Q  277 accaagttactagtagctctagcaccaagtttagtatgaacatatccactcctattaccttctcaaaaagtatg 350  Q
    ||||||||||||| || |||||||||||||||||   |||| | | ||||| | ||||||||||||||||||||    
T  43097357 accaagttactagaagttctagcaccaagtttagcgagaacttctacactcatgttaccttctcaaaaagtatg 43097284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 13285253 - 13285205
Alignment:
Q  82 agtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaat 130  Q
    ||||||| |||| ||||||||||||||||| ||||||||| ||||||||    
T  13285253 agtcatttcaaggcaatttcaatcacaaaatcaagtaagtgttttgaat 13285205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 29437597 - 29437560
Alignment:
Q  115 agtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  29437597 agtaagttttttgaatcctattgcattgttgttttgtg 29437560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 35019680 - 35019813
Alignment:
Q  19 ggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35019680 ggagtttccaaaactccattgttgcgtttttgattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 35019779  T
Q  119 agttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||| ||||| ||||||||||||||    
T  35019780 agttttttgaatcctattgcattgttgttttgtg 35019813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 13616343 - 13616475
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  13616343 aggagtttccaaaactccattgttgcgttttttattatccttggtgcgatttcgaacaatttgaagccattccaagccaatttcaatcacaaaaacaagt 13616442  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||| ||||| ||||||||||||    
T  13616443 aagttttttaaatcctattgcattgttgttttg 13616475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 34801606 - 34801741
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcaca-aaaacaag 116  Q
    |||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||    
T  34801606 aggagttttcaaaactccattgttacgttttttattctcctaggtgcgattttgagcaatttgaagccattccaagccaatttcaatcacacaaaaaaag 34801705  T
Q  117 taagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||| ||||| ||| ||||||||||    
T  34801706 taagttttttgaatcctattgcattcttgttttgtg 34801741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 32691287 - 32691421
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  |||| |||||||| ||||||||||| ||||||||||||||||    
T  32691287 aggagtttccaaaactccattgttgcgtttttaattatccaaggtgcgattttgagtcattttaagtcattacaagccaattttaatcacaaaaacaagt 32691386  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||||||||||| ||||||    
T  32691387 aagttttttgaatcctattgtattgttgctttgtg 32691421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 14124689 - 14124556
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||||||||||| |||||||||||||||  ||||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||    
T  14124689 aggagtttccaaaactctattgttacgttttttattctccaaggtgcgattttcagccatttcaagccattccaagccaatttcaatcacaaaaacaagt 14124590  T
Q  118 aagttttttgaatcatattgtattgttgttttgt 151  Q
    | || || |||||| ||||| |||||||||||||    
T  14124589 acgtgttctgaatcttattgcattgttgttttgt 14124556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 32026089 - 32026198
Alignment:
Q  43 cgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattg 142  Q
    ||||||| |||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  32026089 cgtttttgattctcctaggtgcgattttgagcaatttcaagctattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgaattg 32026188  T
Q  143 ttgttttgtg 152  Q
    ||||||||||    
T  32026189 ttgttttgtg 32026198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 29076294 - 29076162
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||   |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  29076294 aggagtttccaaaactccattgttacgttttttgatctccgaagtgcgattttgagctatttcaagtcattccaaaccaatttcaatcacaaaaacaagt 29076195  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||  ||||| ||||||||||||    
T  29076194 aagtttttttaattctattgcattgttgttttg 29076162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 29109827 - 29109695
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||   |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  29109827 aggagtttccaaaactccattgttacgttttttgatctccgaagtgcgattttgagctatttcaagtcattccaaaccaatttcaatcacaaaaacaagt 29109728  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||  ||||| ||||||||||||    
T  29109727 aagtttttttaattctattgcattgttgttttg 29109695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 29111267 - 29111135
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||   |||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  29111267 aggagtttccaaaactccattgttacgttttttgatctccgaagtgcgattttgagctatttcaagtcattccaaaccaatttcaatcacaaaaacaagt 29111168  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||  ||||| ||||||||||||    
T  29111167 aagtttttttaattctattgcattgttgttttg 29111135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 13404601 - 13404469
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||||||||||| ||||||||| |||| |||||| | ||||| |||||  || |||  |||||||||||| ||||||| ||||||||||||||||||    
T  13404601 gagtttccaaaactccattgttgcggttttcattctcttaggtgcaattttctgccattccaagtcattccaatccaatttaaatcacaaaaacaagtaa 13404502  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||| ||||| ||||||||||||||    
T  13404501 gttttttgaatcctattgcattgttgttttgtg 13404469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 29068236 - 29068104
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||| ||||||| |||||| ||||||||  |||||  |||||||||||||||  ||| ||| |||| ||||||||||||||||||||||||||||    
T  29068236 aggagtttctaaaactccattgttacgttttttgatctccaaggtgcgattttgagctctttcaagccatttcaagccaatttcaatcacaaaaacaagt 29068137  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||  ||||| ||||||||||||    
T  29068136 aagtttttttaattctattgcattgttgttttg 29068104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 29083483 - 29083351
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||| ||||||| |||||| ||||||||  |||||  |||||||||||||||  ||| ||| |||| ||||||||||||||||||||||||||||    
T  29083483 aggagtttctaaaactccattgttacgttttttgatctccaaggtgcgattttgagctctttcaagccatttcaagccaatttcaatcacaaaaacaagt 29083384  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||  ||||| ||||||||||||    
T  29083383 aagtttttttaattctattgcattgttgttttg 29083351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 27641689 - 27641555
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||| |||||| |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  27641689 aggagtttccgaaactccattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 27641590  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  27641589 aagttttttgaatcctattgcattgttgctttgtg 27641555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 11693998 - 11693885
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  11693998 aggagtttccaaaactccattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 11693899  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  11693898 aagttttttgaatc 11693885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 6207031 - 6206918
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||  |||| ||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  6207031 aggagtttccaaaacttcattgatgcgtttttaattttttaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 6206932  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  6206931 aagttttttgaatc 6206918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 12398588 - 12398520
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||| ||| | ||||||||    
T  12398588 cattcaaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgtgttgctattttgtga 12398520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 30763482 - 30763550
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgtttt 149  Q
    ||||||||||||||||||| ||| ||||||| ||||||||| ||||||||| ||||| |||||| ||||    
T  30763482 aagtcattccaagccaattacaagcacaaaatcaagtaagtgttttgaatcctattgcattgttttttt 30763550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 42605202 - 42605071
Alignment:
Q  21 agtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaag 120  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  42605202 agtttccaaaactccattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacagaaataagtaag 42605103  T
Q  121 ttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||||| | ||||||||||||    
T  42605102 ttttttgaatcatattgcactgttgttttgtg 42605071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 41855466 - 41855600
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41855466 aggagttttcaaaactccattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaaaccaatttcaatcacaaaaacaagt 41855565  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||  |||| ||||||||||||||    
T  41855566 aagttttttgaatcccattgcattgttgttttgtg 41855600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 40704130 - 40703997
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40704130 aggagtttccaaaactccattgttgcgttttttgttcttctttgtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 40704031  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||| ||||||||||||||| ||||||||||||||    
T  40704030 aagt-ttttgaatcatattgcattgttgttttgtg 40703997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 22550835 - 22550701
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22550835 aggagtttccaaaactccattgttgcgtttttgattatccttgctgcggttttgagcaatttgaagccattccaagccaatttcaatcacaaaaacaagt 22550736  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||| |||||| ||||| ||||||||||||||    
T  22550735 aagttttctgaatcctattgcattgttgttttgtg 22550701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 28168571 - 28168442
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    |||||| |||||||  ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28168571 gagttttcaaaacttcattgttgcgttttttattctcctgggtgcgattttgagcaatttcaagtcattccaagccaatttcaatcacaaaaacaagtaa 28168472  T
Q  120 gttttttgaatcatattgtattgttgtttt 149  Q
    |||||||||  | ||||| |||||||||||    
T  28168471 gttttttgagccctattgaattgttgtttt 28168442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 41016516 - 41016650
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| |    
T  41016516 aggagtttccaaaactccattgttgcgttttttattatccaaggtgcgattttgagtcatttgaagccattccaagccaatttcaatcacaaaaacaatt 41016615  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  41016616 aagttttttgaatcctattgcattgttgctttgtg 41016650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 41276856 - 41276724
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||  ||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  41276856 aggagtttccaaaactccattgttacgttttttgatctccaaggtacgattttgagctatttcaagccattccaagccaatttcaatcacaaaaacaagt 41276757  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||| ||||| ||||||||||||    
T  41276756 aagtttttttaatcctattgcattgttgttttg 41276724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 44052196 - 44052064
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||||||||||| ||||||||  |||||  ||||| ||||||||| |||| ||| |||| ||||||||||||||||||||||||||||    
T  44052196 aggagtttccaaaactctattgttacgttttttgatctccaaggtgccattttgagctatttcaagccatttcaagccaatttcaatcacaaaaacaagt 44052097  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||| ||||| ||||||||||||    
T  44052096 aagtttttttaatcctattgcattgttgttttg 44052064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 45066332 - 45066198
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||| |||||  ||| |||  ||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  45066332 aggagtttccaaaactccattgttgtgttttgaattatccaaggtgcgattttgagtcatttgaagccattacaagccaatttcaatcacaaaaacaagt 45066233  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  45066232 aagttttttgaatcctattgcattgttgctttgtg 45066198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 26455646 - 26455514
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| | ||||||  |||||  ||||||||||||||| |||| |||||||||  ||||||||||||||||||||||||||    
T  26455646 aggagtttccaaaactccattgttacattttttgatctccaaggtgcgattttgagctatttcaagtcattctcagccaatttcaatcacaaaaacaagt 26455547  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||| ||||| ||||||||||||    
T  26455546 aagtttttttaatcctattgcattgttgttttg 26455514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 15030986 - 15031119
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||| || |||||||||||||| ||| |||  ||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  15030986 aggagtttccaaaattccattgttgcgtttttaattatccaaggtgcgattttgagtcatttgaagccattacaagccaatttcaatcacaaaaacaagt 15031085  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||| |||||||||| ||||| ||||||| ||||||    
T  15031086 aag-tttttgaatcctattgcattgttgctttgtg 15031119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 483918 - 484052
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  483918 aggagtttccaaaactccattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 484017  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  484018 aagttttttgaatcctattgcattgttgctttgtg 484052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 38872902 - 38872778
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||| |||||||| ||||||||| |||| |||||| | |||||||||||  ||          |||||||||||||||||||||||||||||||||    
T  38872902 aggagttttcaaaactccattgttgcggttttcattctcttaggtgcgattttctgc----------cattccaagccaatttcaatcacaaaaacaagt 38872813  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  38872812 aagttttttgaatcctattgcattgttgttttgtg 38872778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 18438793 - 18438861
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaat-catattgtattgttgttttgtg 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  18438793 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatccctattgcattgttgttttgtg 18438861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 19241147 - 19241215
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| | ||||||||    
T  19241147 cattccaagccaatttcaaacacaaaatcaagtaagttttttgaatcatattgcattgctattttgtga 19241215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 19314331 - 19314399
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| | ||||||||    
T  19314331 cattccaagccaatttcaaacacaaaatcaagtaagttttttgaatcatattgcattgctattttgtga 19314399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 38032380 - 38032448
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||| | ||||||||    
T  38032380 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtga 38032448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 26488256 - 26488200
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattg 137  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||    
T  26488256 aagtcattccaagctaatttcaagcacaaaatcaagtaagttttttgaatcctattg 26488200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 31170581 - 31170631
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatc 131  Q
    ||||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  31170581 aagtcattccaagccaatttcaagcacaaaatcaagtaagtgttttgaatc 31170631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 26488370 - 26488318
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattg 137  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||| |||||    
T  26488370 cattccaagctaatttcaagcacaaaatcaagtaagttttttgaatcctattg 26488318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 22519533 - 22519478
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgag 73  Q
    ||||||||||||||||| |||||||||||||| ||| | |  ||||||||||||||    
T  22519533 aggagtttccaaaactccattgttgcgtttttaatttttcaaggtgcgattttgag 22519478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 14120630 - 14120558
Alignment:
Q  27 caaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatt 99  Q
    ||||| |||||||||||||||||| |  || | ||||||||||| | |||  | |||||||||||||||||||    
T  14120630 caaaattctattgttgcgttttttttattcataggtgcgattttcaccaagcttaagtcattccaagccaatt 14120558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 28112885 - 28113019
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  28112885 aggagtttccaaaactctattgttacattttttattctcctaggtgcgattttgagcaatttcaagtcattccaaaccaatttcaatcacaaaaacaagt 28112984  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  28112985 aagttttttgaatcctattgcattgttgttttgtg 28113019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 34142629 - 34142500
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  34142629 aggagtttccaaaactccattgttgcgttttttattctccttgctgcgattttgagcaatttaaagccattccaagccaatttcaatcacaaaaacaagt 34142530  T
Q  118 aagttttttgaatcatattgtattgttgtt 147  Q
    ||||||| |||||| ||||| |||||||||    
T  34142529 aagttttctgaatcctattgcattgttgtt 34142500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 10524302 - 10524168
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||||| |||||||||||||||| |||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  10524302 aggagtttccaaaactctaatgttgcgttttttattatccaaggtgcgattttgagtcatttgaagtcattccaagccaatttcaatcacaaaaacaagt 10524203  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  10524202 aagttttttgaatcctattgcattgttgctttgtg 10524168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 48194602 - 48194468
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  48194602 aggagtttccaaaactctattgttgcgtttttgattttccttgctgcgattttgagcaatttgaagctattccaagcgaatttcaatcacaaaaacaagt 48194503  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||| |||||| ||||| ||||||||||||||    
T  48194502 aagttttctgaatcctattgcattgttgttttgtg 48194468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 36392227 - 36392362
Alignment:
Q  18 aggagtttccaaaactctattgttgcg-ttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaag 116  Q
    ||||||||||||||||| |||||| || ||||||  |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36392227 aggagtttccaaaactccattgttacgattttttgatctcctaggtgcgattttgagcaatttcaagtcattccaagccaatttcaatcacaaaaacaag 36392326  T
Q  117 taagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||| ||||| ||||| ||||||||||||||    
T  36392327 taagtttttagaatcctattgcattgttgttttgtg 36392362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 46596991 - 46597120
Alignment:
Q  21 agtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaag 120  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  46596991 agtttccaaaactccattgttgcgttttttattctccttggtgagattttgagcaatttgaagccatt-caagccaatttcaatcacaaaaacaactaag 46597089  T
Q  121 ttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||| |||| ||||| ||||||||||||||    
T  46597090 tttttt-aatcctattgcattgttgttttgtg 46597120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 45258001 - 45257867
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||  |||||||||||||| ||| |||  ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  45258001 aggagtttccaaaacttcattgttgcgtttttgattatccaaggtgcgattttgagtcatttgaagtcatttcaagccaatttcaatcacaaaaacaagt 45257902  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  45257901 aagttttttgaatcctattgcattgttgctttgtg 45257867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 15309946 - 15309812
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||  ||||||  ||||||| ||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  15309946 aggagtttccaaaactccattgttttgtttttggttctcctaggtgcaattttgagtcatttcaagtcattccaagccaatttcaatcacaaaaacaagt 15309847  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||| |||| ||||| ||||||||||||||    
T  15309846 aagtttttttaatcttattgcattgttgttttgtg 15309812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 28977660 - 28977794
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||||||||||| || |||||  ||| |  ||||||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||    
T  28977660 aggagtttccaaaactctattgttacgatttttgatcttcaaggtgcgattttgagctatttcaagtcattccaatccaatttcaatcacataaacaagt 28977759  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||| |||| ||||| ||||||||||||||    
T  28977760 aagtttttttaatcctattgcattgttgttttgtg 28977794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 34139699 - 34139600
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  34139699 aggagtttccaaaactccattgttgcgttttttattatccaaggtgcgattttgagtcatttgaagtcattccaagccaatttcaatcacaaaaacaagt 34139600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 20566304 - 20566170
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| | |  ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  20566304 aggagtttccaaaactccattgttgcgtttttaatttttcaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 20566205  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  20566204 aagttttttgaatcctattgcattgttgctttgtg 20566170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 15070457 - 15070584
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| | | |||  | ||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  15070457 aggagtttccaaaactccattgttgcgtttttgagtatccaagttgcgattttgagtcatttgaagacattacaagccaatttcaatcacaaaaacaagt 15070556  T
Q  118 aagttttttgaatcatattgtattgttg 145  Q
    ||||||||| |||| ||||| |||||||    
T  15070557 aagtttttttaatcctattgcattgttg 15070584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 17840861 - 17840727
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||| |||||||||  |||||||||||||| ||| |||  |||||||||||  |  ||||||||||||||||| ||||||||||||||||||||||||    
T  17840861 aggagtctccaaaacttcattgttgcgtttttgattatccaaggtgcgattttaggtcatttgaagtcattccaatccaatttcaatcacaaaaacaagt 17840762  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||| ||| ||||||    
T  17840761 aagttttttgaatcctattgcattcttgctttgtg 17840727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 33603308 - 33603437
Alignment:
Q  23 tttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaagtt 122  Q
    |||||||||||| |||||| | |||||  ||||||| ||||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||| ||    
T  33603308 tttccaaaactccattgttacctttttggttctcctaggtgcgattttcagccatttcaagtcattccaagtcaatttcaatcacaaaaacaagtaaatt 33603407  T
Q  123 ttttgaatcatattgtattgttgttttgtg 152  Q
    ||| ||||| ||||| |||| |||||||||    
T  33603408 tttagaatcctattgcattgctgttttgtg 33603437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 40590520 - 40590391
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||| || |||| | ||||||||  |||||  ||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  40590520 aggagtttccaaaattccattgctacgttttttgatctccaaggtgcgattttgagctatttcaagccattccaagccaatttcaatcgcaaaaacaagt 40590421  T
Q  118 aagttttttgaatcatattgtattgttgtt 147  Q
    ||||||||| |||| ||||| |||||||||    
T  40590420 aagtttttttaatcctattgcattgttgtt 40590391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 42503919 - 42504054
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| | | |||  | ||||||||||||  |||||||| ||||  ||| |||||||||||||||||||||||    
T  42503919 aggagtttccaaaactccattgttgcgtttttgagtatccaagttgcgattttgagtcatttgaagacattagaagtcaatttcaatcacaaaaacaagt 42504018  T
Q  118 aagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||| |||| ||||| ||||||| |||||||    
T  42504019 aagtttttttaatcctattgcattgttgctttgtga 42504054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 45361726 - 45361858
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| | ||||||  |||||  ||||||||||||||| |||| ||| ||||| || ||||||||||||| ||||||||||    
T  45361726 aggagtttccaaaactccattgttacattttttgatctccaaggtgcgattttgagctatttcaagccattctaaaccaatttcaatcataaaaacaagt 45361825  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||  ||||| ||||||||||||    
T  45361826 aagtttttttaattctattgcattgttgttttg 45361858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 9365781 - 9365894
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  9365781 aggagtttccaaaactccattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 9365880  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  9365881 aagttttttgaatc 9365894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 46860613 - 46860737
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||| |||||  |||||| ||||||||||| | |||||          | |||||||||||||||||||||||||||    
T  46860613 aggagtttccaaaactccattgttgcggtttttgatctcctaggtgcgatttttaacaatt----------ctaagccaatttcaatcacaaaaacaagt 46860702  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  46860703 aagttttttgaatcctattgcattgttgttttgtg 46860737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 48314832 - 48314899
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48314832 cattccaagcaaatttcaatcacaaaaacaagtaagttttttgaatcatattgcattgttgttttgtg 48314899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 48272359 - 48272292
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  48272359 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattacattgttgttttgtg 48272292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 41623845 - 41623723
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||| ||||||| |||||  ||||||||  |||||| | |||||||||||||||||| ||||||          |||||||||||||||||||||    
T  41623845 aggagtttcgaaaactccattgtcacgttttttgatctcctagatgcgattttgagcaatttcaagtca----------atttcaatcacaaaaacaagt 41623756  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    |||||||||||||| ||||| ||||||||||||    
T  41623755 aagttttttgaatcctattgcattgttgttttg 41623723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 1641045 - 1641113
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| | ||||||||    
T  1641045 cattccaagccaatttcaatcacaaaatcaagtaagtgttttgaatcatattgcattggttttttgtga 1641113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 21185794 - 21185861
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||    
T  21185794 catttcaagccaatttcaatcacaaaaacaaataagttttttgaatcctattgcattgttattttgtg 21185861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 42684111 - 42684044
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||| ||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||    
T  42684111 cattccaaaccaatttcaatcacaaaaataagtaagtttttttaatcctattgcattgttgttttgtg 42684044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 10225814 - 10225753
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaattt 79  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||    
T  10225814 aggagtttccaaaactccattgttgcgtttttgattctcctaggtgcaattttgagcaattt 10225753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 20876484 - 20876548
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgtttt 149  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||| |||||| ||||    
T  20876484 cattccaagccaattccaagcacaaaatcaagtaagttttttgaatcctattgcattgttatttt 20876548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 22292640 - 22292588
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattg 137  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  22292640 cattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattg 22292588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 42736772 - 42736704
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||| ||||||| |||||||||||||| |||| ||||| |||||| | ||||||    
T  42736772 cattccaagccaatttcaagcacaaaatcaagtaagtttttttaatcttattgcattgttatattgtga 42736704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 10225758 - 10225701
Alignment:
Q  95 caatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||||||| ||||||||||||| |||| || || ||||||||||||||    
T  10225758 caatttcaatcacaaaaataagtaagtttttttaatcctactgaattgttgttttgtg 10225701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 4231164 - 4231092
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||   ||| ||||| |||| ||||||||||    
T  4231164 aagtcattccaagccaatttcaagcacaaaatcaagtaagttgttatcatcctattgcattgctgttttgtga 4231092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 43349809 - 43349861
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattg 137  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  43349809 cattcgaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattg 43349861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 17184973 - 17184927
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatc 131  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||    
T  17184973 cattccaagccaatttcaatcacaaaatcaattaagtttttcgaatc 17184927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 48314775 - 48314827
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgatttt 70  Q
    |||||||||||||| || ||||||||| |||| |||||| | |||||||||||    
T  48314775 aggagtttccaaaattccattgttgcggttttcattctcttaggtgcgatttt 48314827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 41497575 - 41497709
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  41497575 aggattttccaaaactccattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattcaaagccaatttcaatcacaaaaataagt 41497674  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| || |||||||||||    
T  41497675 aagttttttgaatcctattgcatcgttgttttgtg 41497709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 8268718 - 8268586
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  8268718 gagtttccaaaactccattgttgcgttttttattctcctagatgcgattttgagcaatttcaagccattctaagccaatttcaatcacaaaaacaagtaa 8268619  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||  ||||| ||||||||||||||    
T  8268618 gttttttgaattctattgaattgttgttttgtg 8268586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 23786227 - 23786362
Alignment:
Q  18 aggagtttccaaaactctattgttgcgtttt-ttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaag 116  Q
    |||||||| |||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23786227 aggagttttcaaaactccattgttgcatttttttattctccttgctgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaag 23786326  T
Q  117 taagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||| | |||| ||||| ||||||||||||||    
T  23786327 taagttttctaaatcctattgcattgttgttttgtg 23786362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 23409472 - 23409341
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  23409472 aggagtttccaaaactccattgttacgttttt-attctcctaggtgcgattttgagcaatttgaagccattccaagccaatttcaatcac--aaacaagt 23409376  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  23409375 aagttttttgaatcctattgcattgttgttttgtg 23409341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 40675841 - 40675973
Alignment:
Q  19 ggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    |||||||||||||||  |||||| | ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40675841 ggagtttccaaaactgcattgttacatttttgattctcctag-tgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtc 40675939  T
Q  119 agttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||| ||||| ||||||||||||||    
T  40675940 agttttttgaatcctattgcattgttgttttgtg 40675973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 43493255 - 43493121
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||| ||||||| |||||| | ||||||  |||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||     
T  43493255 aggagtttcaaaaactccattgttacattttttgatctcctaggtgcgattttgagcaatttcaagccattccaagccaatttcaatcacaaaaacaagc 43493156  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  43493155 aagttttttgaatcctattgcattgttgttttgtg 43493121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 35493310 - 35493178
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||||||||||| |||||| ||||||||  |||||  | || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35493310 gagtttccaaaactccattgttacgttttttgatctccaagttgtgattttgagcaatttcaagtcattccaagccaatttcaatcacaaaaacaagtaa 35493211  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||| |||| ||||| ||||||||||||||    
T  35493210 gtttttttaatcctattgcattgttgttttgtg 35493178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 19470060 - 19470193
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||| |||||||||||| |||||| | |||||| || |||| |||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||    
T  19470060 aggaatttccaaaactccattgttacattttttttt-tcctaggtgcgattttgagcaatttcaagtcattccaagccaattccatttacaaaaacaagt 19470158  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||||||||| ||||||||||||||    
T  19470159 aagttttttgaatcatattgcattgttgttttgtg 19470193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 22003372 - 22003238
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||  ||| |||  ||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  22003372 aggagtttccaaaactcaattgttgcgttttaaattatccaaggtgcgattttgagtcatttgaagccattacaagccaatttcaatcacaaaaacaagt 22003273  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||| ||| ||||||    
T  22003272 aagttttttgaatcctattgcattcttgctttgtg 22003238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 3935965 - 3936099
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| | |  ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  3935965 aggagtttccaaaactccattgttgcgtttttaatttttcaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 3936064  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  3936065 aagttttttgaatcctattgcattgttgctttgtg 3936099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 3943162 - 3943029
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttat-tctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaag 116  Q
    |||||||| |||||||| |||||| |||||||| | ||||   ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  3943162 aggagttttcaaaactccattgttacgttttttttatctcaaaggtgcgattttgagctatttcaagtcattccaagccaatttcaatcacaaaaacaag 3943063  T
Q  117 taagttttttgaatcatattgtattgttgttttg 150  Q
    ||| |||||| |||| ||||| ||||||||||||    
T  3943062 taaatttttttaatcctattgcattgttgttttg 3943029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 17426334 - 17426202
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||||||||||| |||||||||||||| ||| | |  ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||||    
T  17426334 gagtttccaaaactccattgttgcgtttttaatttttcaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagtaa 17426235  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||| ||||| ||||||| ||||||    
T  17426234 gttttttgaatcctattgcattgttgctttgtg 17426202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 28477038 - 28476904
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  | ||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  28477038 aggagtttccaaaactccattgttgcgtttttgattatccaagttgcgattttgagtcatttgaagccattacaagccaatttcaatcacaaaaacaagt 28476939  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||| |||||| || || |||| || ||||||    
T  28476938 aagttttgtgaatcctactgcattggtgctttgtg 28476904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 16583565 - 16583432
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||| |  || |||||  |||||  ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  16583565 aggagtttccaaaactccattatgacgctttttgatctccaaggtgcgattttgagctatttcaagtcattccaagccaatttcaatcacaaaaacaagt 16583466  T
Q  118 aagtt-ttttgaatcatattgtattgttgttttg 150  Q
    ||||| |||| |||| ||||| ||||||||||||    
T  16583465 aagttttttttaatcctattgcattgttgttttg 16583432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 34639284 - 34639152
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||| |||||| |||||| | ||||||  |||||  ||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||    
T  34639284 aggagtttcctaaactccattgttacattttttgatctccaaggtgcgattttgagctatttcaagccattccaagccaatttcaataacaaaaacaagt 34639185  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||  ||||  ||||||||||||    
T  34639184 aagtttttttaattttattacattgttgttttg 34639152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 29090680 - 29090811
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttat-tctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    ||||||||||||||| |||||| ||||||||   |||||   |||||||||||||| |||| ||  ||||||||||||||||||| ||||||||||||||    
T  29090680 gagtttccaaaactccattgttacgtttttttgatctccaatgtgcgattttgagctatttcaacccattccaagccaatttcaaccacaaaaacaagta 29090779  T
Q  119 agttttttgaatcatattgtattgttgttttg 150  Q
    |||||||| |||| ||||| ||||||||||||    
T  29090780 agtttttttaatcctattgcattgttgttttg 29090811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 39798545 - 39798679
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||| |||||||| |||||||||||||| | | ||   | |||||||||||   |||| ||| |||| ||||||||||||||||||||||||||||    
T  39798545 aggagttttcaaaactccattgttgcgtttttgagtatcaaagttgcgattttgaatcattttaagccattacaagccaatttcaatcacaaaaacaagt 39798644  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  39798645 aagttttttgaatcctattgcattgttgctttgtg 39798679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 43984272 - 43984159
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  43984272 aggagtttccaaaactccattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 43984173  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  43984172 aagttttttgaatc 43984159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 14181737 - 14181673
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgtttt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  14181737 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctattgcattgttgtttt 14181673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 2917786 - 2917909
Alignment:
Q  19 ggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    |||||||||||||||||||||||||| |||| |||||| | |||||||||||  ||          ||||||||||||||||||| ||||||||||||||    
T  2917786 ggagtttccaaaactctattgttgcggttttcattctcttaggtgcgattttctgc----------cattccaagccaatttcaagcacaaaaacaagta 2917875  T
Q  119 agttttttgaatcatattgtattgttgttttgtg 152  Q
    | | ||||||||| ||||  ||||||||||||||    
T  2917876 aatgttttgaatcctattacattgttgttttgtg 2917909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 23719448 - 23719583
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |  | | ||||||| ||| |  || |  ||||||||||||||||||||||| |||||||  ||||    
T  23719448 aggagtttccaaaactccattgttacgttttttgcttccgtaggtgcgaatttcacaaagtataagtcattccaagccaatttcaagcacaaaattaagt 23719547  T
Q  118 aagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||| || ||||| |||| | ||||||||    
T  23719548 aagttttttgagtcctattgcattgctattttgtga 23719583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 24107120 - 24107255
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |  | | ||||||| ||| |  || |  ||||||||||||||||||||||| |||||||  ||||    
T  24107120 aggagtttccaaaactccattgttacgttttttgcttccgtaggtgcgaatttcacaaagtataagtcattccaagccaatttcaagcacaaaattaagt 24107219  T
Q  118 aagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||| || ||||| |||| | ||||||||    
T  24107220 aagttttttgagtcctattgcattgctattttgtga 24107255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 10358966 - 10359023
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattg 142  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||    
T  10358966 cattccaagccaatttcaaacacaaaatcaagtaagttttttgaatcctattgcattg 10359023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 34520135 - 34520203
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||| ||||| |||| | ||||||||    
T  34520135 cattccaagctaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtga 34520203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 17537320 - 17537381
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattg 142  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |||||| ||||| ||||    
T  17537320 aagtcattccaagctaatttcaagcacaaaatcaagtaagttttgtgaatcctattgcattg 17537381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 37311135 - 37311200
Alignment:
Q  88 tccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||||||||||| ||||||| |||||||||||| |||||| ||||| |||| | ||||||||    
T  37311135 tccaagccaatttcaagcacaaaatcaagtaagttttctgaatcctattgcattgctattttgtga 37311200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 45435177 - 45435112
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaag 83  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  ||||||||    
T  45435177 aggagtttccaaaactccattgttgcgtttttaattatccaaggtgcgattttgagtcatttgaag 45435112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 5422124 - 5422079
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaat 130  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||    
T  5422124 catttcaagccaatttcaagcacaaaatcaagtaagttttttgaat 5422079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 6280960 - 6281094
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||  |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||    
T  6280960 aggagtttccaaaacttcattgttacgttttttattctccttggtgcgattttaaacaatttgaagtcattccaaaccaatttcaatcacaaaaacaagt 6281059  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||| |||||||||| ||||||||||||||    
T  6281060 aagtttttttaatcatattgcattgttgttttgtg 6281094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 39590538 - 39590404
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  39590538 aggagtttccaaaactcaattgttgcgttttttattctccttgctgcgattttgagcaatttgaagccattccaagtcaatttcaatcacaaaaacaagt 39590439  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||| |||| | ||||| ||||||||||||||    
T  39590438 aagttttctgaaccctattgcattgttgttttgtg 39590404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 33383907 - 33384041
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||  |||||||  |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33383907 aggagtttccaaaactccattgttatgttttttgatctcctaggtgcgattttgagcaatttcaagtcattccaagccaatttcaatcacaaaaacaagt 33384006  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  33384007 aagttttttgaatcttattgcattgttgttttgtg 33384041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 51426640 - 51426775
Alignment:
Q  19 ggagtttccaaaactctattgttgcgtttttt--attctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaag 116  Q
    |||||||||||||||| |||||| ||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51426640 ggagtttccaaaactccattgttacgttttttttattttcctaggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaag 51426739  T
Q  117 taagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||| ||||| |||| |||||||||    
T  51426740 taagttttttgaatcctattgcattgctgttttgtg 51426775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 28083961 - 28083827
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  28083961 aggagtttccaaaactccattgttgcgttttttattatccaaggtgcgattttgagtcatttgaattcattccaagccaatttcaatcacaaaaacaagt 28083862  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  28083861 aagttttttgaatcctattgcattgttgctttgtg 28083827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 34528267 - 34528401
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||| |||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  34528267 aggagtttccaaaactccattgttgtgtttttgattatccttgctgcgattttgagcaatttgaagccattccaagccaatttcaatcacaaaaacaaat 34528366  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||| |||||| ||||| ||||||||||||||    
T  34528367 aagttttctgaatcctattgcattgttgttttgtg 34528401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 21015841 - 21015975
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  21015841 aggagtttccaaaactccattgttgcgtttttgattatccaaggtgcgattttgagtcatttgaagccattccaagccaatttcaatcacaaaaacaagt 21015940  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  21015941 aagttttttgaatcctattgcattgttgctttgtg 21015975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 34151717 - 34151851
Alignment:
Q  19 ggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    |||||||| ||||||| ||||||  ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34151717 ggagtttctaaaactccattgttatgttttttattctcctagatgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaccaagta 34151816  T
Q  119 ag-ttttttgaatcatattgtattgttgttttgtg 152  Q
    || ||||||||||| ||||| ||||||||||||||    
T  34151817 agtttttttgaatcctattgcattgttgttttgtg 34151851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 44558751 - 44558885
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||| || ||||||| |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  44558751 aggagtttccaaaactccattattacgtttttgattctcctaggtgcaatttttagcaattcgaagtcattccaagccaatttcaatcacaaaaacaagt 44558850  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| |||||| |||||||    
T  44558851 aagttttttgaatcctattgcattgttattttgtg 44558885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 49572871 - 49572738
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||| |||||||||||| |||||| ||||||||  |||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49572871 aggaatttccaaaactccattgttacgttttttgatctcttaggtgcaattttgagcaattt-aagtcattccaagccaatttcaatcacaaaaacaagt 49572773  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||||||||| |||||| |||||||    
T  49572772 aagttttttgaatcatattgcattgttattttgtg 49572738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 49422210 - 49422326
Alignment:
Q  36 attgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatat 135  Q
    |||||||||||||||  |||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49422210 attgttgcgttttttgatctcctaggtgcgattttcagcaatttcaagccattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcctat 49422309  T
Q  136 tgtattgttgttttgtg 152  Q
    || ||||||||||||||    
T  49422310 tgcattgttgttttgtg 49422326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 955894 - 956027
Alignment:
Q  19 ggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    |||||||| |||| |  |||||| ||||||||  |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||    
T  955894 ggagtttctaaaaattcattgttacgttttttgatctcctaggtgcgattttgagcaatttcaagccattccaagccaatttcaatcacaaaaataagta 955993  T
Q  119 agttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||| ||||| ||||||||||||||    
T  955994 agttttttgaatcctattgcattgttgttttgtg 956027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 56140661 - 56140529
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||  ||||||||||||||  |||| ||| |||||||||||||||||||||||||||||||||    
T  56140661 aggagtttccaaaactccattgttacgttttttgatctccaaggtgcgattttgagttatttcaagccattccaagccaatttcaatcacaaaaacaagt 56140562  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||| ||||| ||||||||||||    
T  56140561 aagtttttttaatcctattgcattgttgttttg 56140529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 37868239 - 37868107
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| | ||||||  |||||  ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  37868239 aggagtttccaaaactccattgttacatttttttatctccaaggtgcgattttgagctatttcaagtcatttcaagccaatttcaatcacaaaaacaagt 37868140  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||  |||| ||||| ||||||||||||    
T  37868139 aagtttttgtaatcctattgcattgttgttttg 37868107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 40352438 - 40352572
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||  ||| |||  ||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  40352438 aggagtttccaaaactccattgttgcgttttgaattatccaaggtgcgattttgagtcatttgaagccattacaagccaatttcaatcacaaaaacaagt 40352537  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||  ||||| ||| ||| ||||||    
T  40352538 aagttttttgaattctattgcattattgctttgtg 40352572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 41793466 - 41793600
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| | |  ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  41793466 aggagtttccaaaactccattgttgcgtttttaatttttcaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 41793565  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  41793566 aagttttttgaatcctattgcattgttgctttgtg 41793600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 1044515 - 1044385
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||  ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| |    
T  1044515 aggagtttccaaaactccattgttacgttttttgatctccaaggtgcgattttgagctatttcaagtcatttcaagccaatttcaatcacaaaaacaaat 1044416  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||  ||||| ||||||||||||    
T  1044415 aagtttttttaat--tattgcattgttgttttg 1044385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 9491255 - 9491123
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||  ||||||||||| ||| |||| ||||||||||||| |||||||||||||||||| ||||    
T  9491255 aggagtttccaaaactccattgttacgttttttgatctccaaggtgcgattttaagctatttcaagtcattccaagtcaatttcaatcacaaaaataagt 9491156  T
Q  118 aagttttttgaatcatattgtattgttgttttg 150  Q
    ||||||||| |||| ||||| |||||| |||||    
T  9491155 aagtttttttaatcctattgcattgttattttg 9491123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 55799500 - 55799366
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| | |  ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  55799500 aggagtttccaaaactccattgttgcgtttttaatttttcaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 55799401  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| |||||  |||||| ||||||    
T  55799400 aagttttttgaatcctattgctttgttgctttgtg 55799366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 4783748 - 4783879
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||  ||||||  || ||||  || |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  4783748 aggagtttccaaaactccattgttaggtttttggttgtcctaagtacgattttgagcaatttcaagccattccaagctaatttcaatcacaaaaacaagt 4783847  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
       ||||||||||| ||||| ||||||||||||||    
T  4783848 ---ttttttgaatcttattgcattgttgttttgtg 4783879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 6175979 - 6176092
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  6175979 aggagtttccaaaactccattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 6176078  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  6176079 aagttttttgaatc 6176092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 49096289 - 49096176
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |    ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  49096289 aggagtttccaaaactccattgttgcgtttttaatttttgaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 49096190  T
Q  118 aagttttttgaatc 131  Q
    ||||||||||||||    
T  49096189 aagttttttgaatc 49096176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 37959690 - 37959568
Alignment:
Q  19 ggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagta 118  Q
    |||||||||||||||| ||||||||| |||| |||||| | |||||||||||  ||          ||||||||||||||||||||||||||||||||||    
T  37959690 ggagtttccaaaactccattgttgcggttttcattctcttaggtgcgattttctgc----------cattccaagccaatttcaatcacaaaaacaagta 37959601  T
Q  119 agttttttgaatcatattgtattgttgttttgt 151  Q
    ||||||||||||| | ||| |||||||| ||||    
T  37959600 agttttttgaatcctgttgcattgttgtattgt 37959568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 51026220 - 51026291
Alignment:
Q  82 agtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||| | ||||||||    
T  51026220 agtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtga 51026291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 43887664 - 43887721
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgt 138  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  43887664 aagtcattccaagccaatttcaagcacaaaatcaagtaagttttttgaatcattttgt 43887721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 9719048 - 9718976
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||| |||||||||||||| || |||| ||||||||||||||||||| ||||  |||||||||||||||    
T  9719048 aagtcatttcaagccaatttcaagcataaaatcaagtaagttttttgaatcttatttcattgttgttttgtga 9718976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 4909927 - 4910059
Alignment:
Q  21 agtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaag 120  Q
    |||||||||||| | |||||||||||||||    || | ||||||||||| | |||    |||||||||||||| |||||||| ||||||| ||||||||    
T  4909927 agtttccaaaacaccattgttgcgttttttgaattcttaggtgcgattttcaccaagcataagtcattccaagctaatttcaagcacaaaatcaagtaag 4910026  T
Q  121 ttttttgaatcatattgtattgttgttttgtga 153  Q
    || ||   ||| ||||| |||||||||||||||    
T  4910027 ttgttatcatcttattgcattgttgttttgtga 4910059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 36774879 - 36774947
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||  ||||| |||| | ||||||||    
T  36774879 cattccaagcgaatttcaagcacaaaatcaagtaagttttttgaattctattgcattgctattttgtga 36774947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 2774804 - 2774763
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagtttttt 126  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  2774804 cattccaagccaatttcaagcacaaaatcaagtaagtttttt 2774763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 22438423 - 22438370
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgt 138  Q
    ||||| ||| ||||||||| ||||||| ||||||||||||||||||| ||||||    
T  22438423 cattcaaagacaatttcaagcacaaaatcaagtaagttttttgaatcctattgt 22438370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 47312958 - 47312924
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaa 115  Q
    ||||||||||||||||||||||| |||||||||||    
T  47312958 aagtcattccaagccaatttcaaacacaaaaacaa 47312924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 24076765 - 24076708
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattg 142  Q
    ||||||||||||||| ||| ||||||| |||||||||  |||||||| ||||| ||||    
T  24076765 cattccaagccaattacaaacacaaaaccaagtaagtgctttgaatcctattgcattg 24076708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 21410234 - 21410266
Alignment:
Q  18 aggagtttccaaaactctattgttgcgtttttt 50  Q
    ||||||||||||||||| |||||||||||||||    
T  21410234 aggagtttccaaaactccattgttgcgtttttt 21410266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 3554 - 3425
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  3554 aggagtttccaaaactccattgttgcgttttttattctccttgctgcgattttgagcaatttaaagccattccaagccaatttcaatcacaaaaacaagt 3455  T
Q  118 aagttttttgaatcatattgtattgttgtt 147  Q
    ||||||| |||||| ||||| |||||||||    
T  3454 aagttttctgaatcctattgcattgttgtt 3425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 624 - 494
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||        
T  624 aggagtttccaaaactccattgttgcgttttttattatccaaggtgcgattttgagtcatttgaagtcattccaagccaatttcaatcacaaaaac---- 529  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  528 aagttttttgaatcttattgcattgttgctttgtg 494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 541029 - 541160
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||||||||||||  |||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  541029 aggagtttccaaaactcccttgttgcgttttttattctccttgct---attttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 541125  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||| |||||| ||||| ||||||||||||||    
T  541126 aagttttctgaatcctattgcattgttgttttgtg 541160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 34682361 - 34682493
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  34682361 gagtttccaaaactccattgttacgttttttattctcctaggtgcgattttgagcaatttgaagtcattccaagttaatttcaatcacaagaacaagtaa 34682460  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||  ||||| ||||||||||||||    
T  34682461 gttttttgaattctattgcattgttgttttgtg 34682493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 25499858 - 25499724
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| | ||||||  |||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  25499858 aggagtttccaaaactccattgttacattttttgatctcctaggtgcgattttgagcaatttcaagtcattacaagccaatttcaatcacaaaaacaagt 25499759  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  25499758 aagttttttgaatcctattgcattgttgttttgtg 25499724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 5898 - 6032
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  5898 aggagtttccaaaactccattgttgcgtttttgattatccaaggtgcgattttgagtcatttgaagccattccaagccaatttcaatcacaaaaacaagt 5997  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  5998 aagttttttgaatcctattgcattgttgctttgtg 6032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 8574823 - 8574957
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||  ||| |||  ||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  8574823 aggagtttccaaaactccattgttgcgttttgaattatccaaggtgcgattttgagtcatttgaagccattacaagccaatttcaatcacaaaaacaagt 8574922  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  8574923 aagttttttgaatcttattgcattgttgctttgtg 8574957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 27660042 - 27660161
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  27660042 aggagtttccaaaactccattgttgcgtttttaattatccaaggtgcgattttgagtcatttgaagccattacaagccaatttcaatcacaaaaacaagt 27660141  T
Q  118 aagttttttgaatcatattg 137  Q
    |||||||||||||| |||||    
T  27660142 aagttttttgaatcttattg 27660161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 11348472 - 11348338
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||    
T  11348472 aggagtttccaaaactccattgttgcgtttttgattatccaaggtgcgattttgagtcatttgaagctattccaagccaatttcaatcacaaaaacaagt 11348373  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||| |||| |||| ||||| ||||||| ||||||    
T  11348372 aagtgtttttaatcctattgcattgttgctttgtg 11348338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 8539513 - 8539381
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||||||||| || |||   |||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||    
T  8539513 aggagtttccaaaactccattgttgcgtttttt-ttatccaatgtgcgattttgagtcatttgaagtcattccaaaccaattccaatcacaaaaacaagt 8539415  T
Q  118 aagttttttgaatcatattgtattgttgttttgt 151  Q
    |||||||||||||| ||||| ||||||| |||||    
T  8539414 aagttttttgaatcctattgcattgttgctttgt 8539381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 19035340 - 19035474
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| | |  ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||    
T  19035340 aggagtttccaaaactccattgttgcgtttttaatttttcaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagt 19035439  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  19035440 aagttttttgaatcctattgcattgttgctttgtg 19035474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 41798921 - 41799054
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||| ||||||||  |||||   |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  41798921 aggagtttccaaaactccattgttacgttttttgatctccaatgtgcgattttgagctatttcaagacattccaagccaatttcaatcacaaaaacaagt 41799020  T
Q  118 aag-ttttttgaatcatattgtattgttgttttg 150  Q
    ||| |||||| |||| ||||| ||||||||||||    
T  41799021 aagttttttttaatcttattgcattgttgttttg 41799054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 38855682 - 38855548
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| | | ||   | |||||||||||   |||||||| |||| ||||||||||||||||||||||||||||    
T  38855682 aggagtttccaaaactccattgttgcgtttttgagtatcaaagttgcgattttgaatcatttgaagccattacaagccaatttcaatcacaaaaacaagt 38855583  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  38855582 aagttttttgaatcctattgcattgttgctttgtg 38855548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 11028975 - 11028841
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| | | ||   | |||||||| ||   |||| |||||||| ||||||||||||||||||||||||||||    
T  11028975 aggagtttccaaaactccattgttgcgtttttgagtatcaaagttgcgatttcgaatcattttaagtcattacaagccaatttcaatcacaaaaacaagt 11028876  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||| ||||||    
T  11028875 aagttttttgaatcctattgcattgttgctttgtg 11028841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 35926466 - 35926592
Alignment:
Q  24 ttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaagttt 123  Q
    ||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||| ||| |||||||||   |||||||||||||| | || |||||||    
T  35926466 ttccaaaactccattgttacgttttttgttctcctaggtgcgattttgagcaatttcaagccattccaagaacatttcaatcacaaagaaaaataagttt 35926565  T
Q  124 tttgaatcatattgtattgttgttttg 150  Q
    |||||||| ||||| |||| |||||||    
T  35926566 tttgaatcctattgcattgctgttttg 35926592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 41201839 - 41201964
Alignment:
Q  27 caaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaagtttttt 126  Q
    ||||||| ||||||| ||||||||   |||||  || |||||||||||||||| ||| ||||  |||||||||||||||||||||| |||||||||||||    
T  41201839 caaaactttattgttacgttttttgagctcctacgtacgattttgagcaatttcaagccattttaagccaatttcaatcacaaaaataagtaagtttttt 41201938  T
Q  127 gaatcatattgtattgttgttttgtg 152  Q
     |||| ||||| ||||||||||||||    
T  41201939 aaatcctattgcattgttgttttgtg 41201964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 18310018 - 18309894
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||  |||| |||||| | |||||||||||  ||          |||||||||||||||||||||||||||||||||    
T  18310018 aggagtttccaaaactccattgttgcagttttcattctcttaggtgcgattttctgc----------cattccaagccaatttcaatcacaaaaacaagt 18309929  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||| ||||||||||||||    
T  18309928 aagttttttgaatcctattgcattgttgttttgtg 18309894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 20200065 - 20199995
Alignment:
Q  83 gtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  20200065 gtcattccaagccaatttcaatcacaaaaacaagtaaattttttgaatcttattgcattgttgttttgtga 20199995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 30711130 - 30710997
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |   |||||||||  ||| |||  ||||||||||||||  |||||||| |||| ||||||||||| ||| ||||||||||||    
T  30711130 aggagtttccaaaactccaagtttgcgtttta-attatccaaggtgcgattttgagtcatttgaagccattacaagccaattttaataacaaaaacaagt 30711032  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||  ||||||||||||| ||||||    
T  30711031 aagttttttgaattctattgtattgttgctttgtg 30710997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 3603119 - 3602996
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| ||||||||| |||| |||||| | |||||||||||  ||          |||||||||||||||||||||||||||||||||    
T  3603119 aggagtttccaaaactccattgttgcggttttcattctcttaggtgcgattttctgc----------cattccaagccaatttcaatcacaaaaacaagt 3603030  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||| |||||||||||||| | ||||||||||||    
T  3603029 aagttctttgaatcatattgca-tgttgttttgtg 3602996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 6791887 - 6791959
Alignment:
Q  81 aagtcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||| |||| | ||||||||    
T  6791887 aagtcattctaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtga 6791959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 30887348 - 30887256
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaa-tttcaatcacaa 109  Q
    ||||||||||||||||| |||||| ||||||||  |||||   |||||||||||||| |||| ||| ||||||||||||| ||||||||||||    
T  30887348 aggagtttccaaaactccattgttacgttttttgatctccaatgtgcgattttgagctatttcaagccattccaagccaattttcaatcacaa 30887256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 1398706 - 1398811
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    |||||||| |||||||| ||||||   ||||||  |||||| |||||||||||||||||||| |||  |||| ||| |||||||||| | |||||||||     
T  1398706 aggagttttcaaaactccattgttatattttttgatctcctaggtgcgattttgagcaatttcaagcaattctaagtcaatttcaataaaaaaaacaagc 1398805  T
Q  118 aagttt 123  Q
    ||||||    
T  1398806 aagttt 1398811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 36348798 - 36348867
Alignment:
Q  84 tcattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||  ||||| |||| | ||||||||    
T  36348798 tcattccaagccaatttcaagcacaaaatcaagtaagttttttgaattctattgcattgctattttgtga 36348867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 40937223 - 40937158
Alignment:
Q  88 tccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||| | ||||||||    
T  40937223 tccaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattgcattgctattttgtga 40937158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 1696528 - 1696460
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||| ||||||||| ||||||| ||| ||||||||||||||| ||||| |||| | ||||||||    
T  1696528 cattccaagtcaatttcaagcacaaaatcaattaagttttttgaatcctattgcattgctattttgtga 1696460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 41088303 - 41088355
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattg 137  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  41088303 cattctaagccaatttcaagcacaaaatcaagtaagttttttgaatcctattg 41088355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 35566995 - 35566958
Alignment:
Q  21 agtttccaaaactctattgttgcgttttttattctcct 58  Q
    |||||||||||||| |||||||||||||||||||||||    
T  35566995 agtttccaaaactccattgttgcgttttttattctcct 35566958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 1973162 - 1973094
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    |||||||||| |||||||| ||||||| ||||||| ||||||||||| ||| | |||| | ||||||||    
T  1973162 cattccaagctaatttcaagcacaaaatcaagtaaattttttgaatcctatggcattgctattttgtga 1973094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 7483927 - 7483979
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattg 137  Q
    |||| |||||||||||||| ||||||| |||||||||||||| |||| |||||    
T  7483927 catttcaagccaatttcaagcacaaaatcaagtaagtttttttaatcctattg 7483979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 23190746 - 23190678
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||||||||||||| |||||||  ||||||||| ||   ||| ||||| |||||||||||||||    
T  23190746 cattccaagccaatttcaagcacaaaattaagtaagttgttatcatcctattgcattgttgttttgtga 23190678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 20200120 - 20200068
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgatttt 70  Q
    ||||||||||||||||| ||||||||| |||| |||||| | ||||| |||||    
T  20200120 aggagtttccaaaactccattgttgcggttttcattctcttaggtgccatttt 20200068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 35566955 - 35566919
Alignment:
Q  116 gtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||||| | ||||||||||||||||||    
T  35566955 gtaagttttttgaatcctgttgtattgttgttttgtg 35566919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 277 - 415
Target Start/End: Complemental strand, 22130 - 21997
Alignment:
Q  277 accaagttactagtagctctagcaccaagtttagtatgaacatatccactcctattaccttctcaaaaagtatgataaagtcacaccgttcaatcaaaga 376  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||||         
T  22130 accaagttactagtagctctagcaccaagtttagtgtgaacgtatccactcctattaccttctcgaaaagtatgataaagtcgcaccgtccaatc----- 22036  T
Q  377 attgacgaatcatctcaatctcattcccataatgatgat 415  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  22035 attgacgaatcatctcaatctcattctgataatgatgat 21997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 22208 - 22161
Alignment:
Q  234 ctaagcacgagagtatgaaactcatatggcatccataagaaggaccaa 281  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  22208 ctaagcatgagagtatgaaactcatatggcatccacaagaaggaccaa 22161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 190
Target Start/End: Complemental strand, 22283 - 22252
Alignment:
Q  159 aaattcatagtatctttttttggttacatgag 190  Q
    ||||||||||||||||||||||||||||||||    
T  22283 aaattcatagtatctttttttggttacatgag 22252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 10780 - 10914
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||  |||||||||||||||||| |||  ||||||||||||||  ||||||| |||||  |||||||||||||||||||||||||||    
T  10780 aggagtttccaaaacttcattgttgcgttttttattatccaaggtgcgattttgagtcatttgaattcattttaagccaatttcaatcacaaaaacaagt 10879  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||||||||| ||||||| ||||||    
T  10880 aagttttttgaatcatattgcattgttgctttgtg 10914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 175 - 41
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||| ||| |||  ||||||||||||||  |||||||| |||| |||| |||||| ||||||||||||||||    
T  175 aggagtttccaaaactccattgttgcgtttttaattatccaaggtgcgattttgagtcatttgaagccattacaagtcaattttaatcacaaaaacaagt 76  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||||| ||||||||| ||| ||||||    
T  75 aagttttttgaatcctattgtattattgctttgtg 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 5433 - 5567
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagt 117  Q
    ||||||||||||||||| |||||||||||||||| | |||  | ||| ||||||||  |||||||| |||| ||||||||||||||||| ||||||||||    
T  5433 aggagtttccaaaactccattgttgcgttttttagtatccaagttgcaattttgagtcatttgaagccattacaagccaatttcaatcataaaaacaagt 5532  T
Q  118 aagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||| |||| ||||| ||||||| ||||||    
T  5533 aagtttttttaatcctattgcattgttgctttgtg 5567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 84684 - 84816
Alignment:
Q  20 gagtttccaaaactctattgttgcgttttttattctccttggtgcgattttgagcaatttgaagtcattccaagccaatttcaatcacaaaaacaagtaa 119  Q
    ||||||||||||||| |||||||| ||||| ||| | |  ||||||||||||||  |||||||| ||||  |||||||||| ||||||||||||||||||    
T  84684 gagtttccaaaactccattgttgcatttttaatttttcaaggtgcgattttgagtcatttgaagccattagaagccaattttaatcacaaaaacaagtaa 84783  T
Q  120 gttttttgaatcatattgtattgttgttttgtg 152  Q
    |||||||||||| ||||| ||||||| ||||||    
T  84784 gttttttgaatcctattgcattgttgctttgtg 84816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 16561 - 16628
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  16561 cattccaagtcaatttcaagcacaaaaacaagtaaattttttgaatcctattgcattgttgttttgtg 16628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 2071 - 2003
Alignment:
Q  85 cattccaagccaatttcaatcacaaaaacaagtaagttttttgaatcatattgtattgttgttttgtga 153  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||||  |||||||||| ||||||||||    
T  2071 cattccaagtcaatttcaagcacaaaaacaagtaagttttgtgaattctattgtattgatgttttgtga 2003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 4044 - 4114
Alignment:
Q  85 cattccaagccaatttcaatc-acaaaaacaag-taag-ttttttgaatcatattgtattgttgttttgtg 152  Q
    ||||||||||||||||||||| ||||||||||| |||| |||||| |||| ||||| ||||||||||||||    
T  4044 cattccaagccaatttcaatcaacaaaaacaagttaagttttttttaatcttattgcattgttgttttgtg 4114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 3987 - 4039
Alignment:
Q  18 aggagtttccaaaactctattgttgcgttttttattctccttggtgcgatttt 70  Q
    ||||||||||||||||  ||||||||| |||| |||||| | |||||||||||    
T  3987 aggagtttccaaaacttcattgttgcggttttcattctcttaggtgcgatttt 4039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University