View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_low_19 (Length: 371)
Name: NF3115_low_19
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 5 - 344
Target Start/End: Complemental strand, 32372180 - 32371841
Alignment:
| Q |
5 |
caaaatagaaaagaggaacatatcagactggacaaagcattgcaaaccagacaaacgaaaaaagagaagaggaccacaaacctgacatgcgaacacaaga |
104 |
Q |
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| T |
32372180 |
caaaatagaaaagaggaacacatcagactggacaaagcattgcaaaccagacaaacgaaaaaagagaagaggaccacaaacctgacatgcgaacacaaga |
32372081 |
T |
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| Q |
105 |
gaaggccgaaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtatcacacagagatttaagagaaacacaaagactag |
204 |
Q |
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| T |
32372080 |
gaaggccgaaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtgtcacacagagatgtaagagaaacacaaagactag |
32371981 |
T |
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| Q |
205 |
agattagagaagatattaggatacaactcttagaattcaataaactgtgaggcggtactgcgatttgggcttttttagnnnnnnnttcgaactccataat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32371980 |
agattagagaagatattaggatacaactcttagaattcaataaactgtgaggcggtactgcgatttgggcttttttagaaaaaaattcgaactccataat |
32371881 |
T |
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| Q |
305 |
cgtgagcttttctcgcatctgtccagaaaacgattatgtt |
344 |
Q |
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|||||| |||||||||||||||||||||||||| |||||| |
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| T |
32371880 |
cgtgagtttttctcgcatctgtccagaaaacgaatatgtt |
32371841 |
T |
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