View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3115_low_20 (Length: 366)
Name: NF3115_low_20
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 30423468 - 30423822
Alignment:
| Q |
1 |
taataaacttacgcgtcaacacaataatcctaacaccattattattataagtaaaaaagattcaagtcacgagcatcctattcataacaactttaacctt |
100 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30423468 |
taataaacttaagattcaacacaatattcctaacaccattattattataagtaaaaaagattcaagtcacgagcatcctattcataacaactttaacctt |
30423567 |
T |
|
| Q |
101 |
attgaacattcgcacgcatcccaaaatcctaattcaatcaacaacaaaactttctgccaattttaagatacacccaggcattactgttctgggtatacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30423568 |
attgaacattcgcacgcatcccaaaatcctaattcaatcaacaacaaaactttctgccaattttaagatacacccaggcattactgttctgggtatacta |
30423667 |
T |
|
| Q |
201 |
tcaaataacagaaacgaccaatgatattatacgggatactacttcaaaaactttccttaaacgggtccattttctttatttgtatgaaaaatatcaaccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30423668 |
tcaaataacagaaacgaccaatgatattatacgggatactacttcaaaaactttccttaaacgggtctattttctttatttgtatgaaaaatatcaaccc |
30423767 |
T |
|
| Q |
301 |
ttaatagttcgctgcaagatctctggttttatgtcaacttgtgaattgtcttcat |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30423768 |
ttaatagttcgctgcaagatctctggttttatgtcaacttgtgaattgtcttcat |
30423822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University