View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_low_21 (Length: 353)
Name: NF3115_low_21
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 38123047 - 38122719
Alignment:
| Q |
11 |
cacagaatgggatataaaaattacagctggtctttgcacggcaattcactcagcccggttatcttgtactcttggttagatggtttagctgtgatcctca |
110 |
Q |
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| T |
38123047 |
cacaaaatgggatataaaaattacagctggtctttgcacgacaattcactcagcccggttatcttgtactcttggttagatggtttagctgtgatcctca |
38122948 |
T |
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| Q |
111 |
aattcttcagagtccttttagcctacacagtaagatatac-aagggatcaggccttgatttagttgaagaacaattgagcataacaaatggttaaggaac |
209 |
Q |
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| T |
38122947 |
aattcttgagggtccttttagcctacacagtaaaatatacaaagggatcaggccttgatttagattaagaacaatcgtgcataacaaatggttaaggaac |
38122848 |
T |
|
| Q |
210 |
aattatcaaaacaaacaagtcttc-gaaaatttggttaccttattccagtcaagtctggaacgtactctcacattttgatttgccatcaagaagtcacaa |
308 |
Q |
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| T |
38122847 |
aattagcaacacaagcaagtcatcggaaaatctggttaccttattccagtcaagactgaaaggatctctcacattttgattttcaattaggaagtcaacc |
38122748 |
T |
|
| Q |
309 |
acaggcccaggagagacaatcatagttgt |
337 |
Q |
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|||||||||||| |||||||| ||||| |
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| T |
38122747 |
acaggcccaggacgtacaatcatggttgt |
38122719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 38114552 - 38114224
Alignment:
| Q |
16 |
aatgggatataaaaattacagctggtctttgcacggcaattcactcagcccggttatcttgtactcttggttagatggtttagctgtgatcctcaaattc |
115 |
Q |
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||||||||| ||||||||||||||||| ||||| |||| |||||| | || || || |||||||||||||| | ||| ||| ||||||||||||||| |
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| T |
38114552 |
aatgggatagaaaaattacagctggtccttgcatggcatttcacttaaaccagtaattttgtactcttggttggttgggctagtagtgatcctcaaattc |
38114453 |
T |
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| Q |
116 |
ttcagagtccttttagcctacacag-taagatatacaagggatcaggccttgat-ttag-----ttgaagaacaattgagcataacaaatggttaaggaa |
208 |
Q |
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| T |
38114452 |
tttagagtccttttagcctacacaaataaaatatacaagggatcaggtctaggtcttagaatacttgaagagcaattgagcataacaaatggttcagaaa |
38114353 |
T |
|
| Q |
209 |
caattatcaaaacaaacaagtcttc-gaaaatttggttaccttattccagtcaagtctggaacgtactctcacattttgatttgccatcaagaagtcaca |
307 |
Q |
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| T |
38114352 |
caattag-aaaacaaacaagtcttcagaaaatttggttaccttattccagtcaagactgaaaggatctctcacattctggtttgcaatcaagaaatcaac |
38114254 |
T |
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| Q |
308 |
aacaggcccaggagagacaatcatagttgt |
337 |
Q |
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| T |
38114253 |
cacaggcccaggatggacaatcatggttgt |
38114224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 14915445 - 14915153
Alignment:
| Q |
20 |
ggatataaaaattacagctggtctttgcacggcaattcactcagcccggttatcttgtactcttggttagatggtttagctgtgatcctcaaattcttca |
119 |
Q |
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||||| |||||| |||||||||||||||| ||| |||||||||||| || || ||| |||||||||| || || ||| ||||| ||||| || || | |
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| T |
14915445 |
ggatagaaaaatcacagctggtctttgcatggcctttcactcagcccagtgattttgaactcttggttggacggcatagtcgtgattctcaagtttttaa |
14915346 |
T |
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| Q |
120 |
gagtccttttagcctacacagtaagatatacaagggatc------aggccttgatttagttgaagaacaattgagcataacaaatggttaaggaacaatt |
213 |
Q |
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|||||||||| ||||||||| ||| ||| |||| | ||| ||| || ||||||| |||||||||| || | |||||||| || |||||| | |
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| T |
14915345 |
gagtccttttggcctacacaataaaatagacaaagtatcataattaggttttattttagttaaagaacaattaagtacggcaaatggtaaaagaacaaat |
14915246 |
T |
|
| Q |
214 |
atcaaaacaaacaagtcttcgaa-aatttggttaccttattccagtcaagtctggaacgtactctcacattttgatttgccatcaagaagtca |
305 |
Q |
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| |||||||||||||||||| || ||| |||||||| |||| ||||| || || | || |||||||||||||||| |||||||||||| |
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| T |
14915245 |
aacaaaacaaacaagtcttcaaattttttttttaccttaatccaatcaaggttgaaaggatctttcacattttgatttgcaatcaagaagtca |
14915153 |
T |
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