View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_low_23 (Length: 335)
Name: NF3115_low_23
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 4303885 - 4303562
Alignment:
| Q |
12 |
aagaaaagatcaaaataataataattgacatatatttggttggttttgatacgttgttcagctgttcctttcttgcacagaagaatcgataaaagtcatg |
111 |
Q |
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| T |
4303885 |
aagaaaagatcaaaataataataattgacatatatttggttggttttgatacgttgttcagctgttcctttcttgcacagaagaatcgataaaagtcatg |
4303786 |
T |
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| Q |
112 |
aagaatggaaatttcaaattgattggtgcatgtaagtttcaattattttggttctaaagttttacgttgacgaatgattattttatattttttaaagaag |
211 |
Q |
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| T |
4303785 |
aagaatggaaatttcaaattgattggtgcatgtaagtttcaattattttggctctaaagttttacgttgatgaatgattattttttattttttaaagaag |
4303686 |
T |
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| Q |
212 |
ttatgttgatgaatgaattaatattgactaaagactaaatcaacaatttagtccttgtaagggtacaccatttactctttgaatttgtcaaatagtaaat |
311 |
Q |
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| T |
4303685 |
ttatgttgatgaatgaattaatattgactaaagactaaatcaacaatttagtccttgtaagggtacaccatttactctttgaatttgtcaaatagtaaat |
4303586 |
T |
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| Q |
312 |
ttgaacagtattagtcaacttgat |
335 |
Q |
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| T |
4303585 |
ttgaacagtattagtcaacttgat |
4303562 |
T |
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