View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_low_24 (Length: 330)
Name: NF3115_low_24
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 2522591 - 2522293
Alignment:
| Q |
17 |
accttgaaccaggtttgtttaactattacatatcttgtgatgataacgtttgcaattggatagtttagatattatttatgaatatttatgttttcctaat |
116 |
Q |
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| T |
2522591 |
accttgaaccaggtttgtttaactattacatatcttgtgatgataaagtttgcaattggatagtttagatattatttatgcatatttatgttttactaat |
2522492 |
T |
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| Q |
117 |
gttattatatcaatgctaacattttgtgtttttgatatattgttgatattcctttttatgttgtgannnnnnnnngttgaattttcatgttaaaaacatg |
216 |
Q |
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| T |
2522491 |
gttattatatcaatgctaacattttgcgtttttgatatattgttgatattcctttttatgttgtga--tttttttgttgaattttcatgttaaaaacatg |
2522394 |
T |
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| Q |
217 |
gtgcataaactcatttagtcactcattgcattttctgtagtaaattgcactaagtttatgttgacttaaagtagatccatatatttgccaatttctgctt |
316 |
Q |
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| T |
2522393 |
gtgcataaactcatttagtcactcattgcattttctgtagtaaattgcactaagtttatgttgacttaaagtagacccatatatgtgccaatttctgctt |
2522294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 51 - 290
Target Start/End: Complemental strand, 1768546 - 1768313
Alignment:
| Q |
51 |
ttgtgatgataacgtttgcaattggatagtttagatattatttatgaatatttatgttttcctaatgttattatatcaatgctaacattttgtgtttttg |
150 |
Q |
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||||||| |||| |||||||||| ||||||||| ||||||||| || |||||| ||||| | ||| ||||||||||||||| ||| ||||| || |||| |
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| T |
1768546 |
ttgtgattataaagtttgcaatttgatagtttaaatattatttgtgcatatttccgttttaccaatattattatatcaatgccaactttttgcgtatttg |
1768447 |
T |
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| Q |
151 |
atatattgttgatattcctttttatgttgtgannnnnnnnngttgaattttcatgttaaaaacatggtgcataaactcatttagtcactcattgcatttt |
250 |
Q |
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| T |
1768446 |
atat---gttgatattcctttttattttgtaatttttt---gttgtattttcatgttaaaaacatggcatgtgaactcatttagtcactcattgcatttt |
1768353 |
T |
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| Q |
251 |
ctgtagtaaattgcactaagtttatgttgacttaaagtag |
290 |
Q |
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| T |
1768352 |
ctgtaataaattgcatcaagtttttgttgacttaaagtag |
1768313 |
T |
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