View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_low_25 (Length: 327)
Name: NF3115_low_25
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 34451043 - 34451182
Alignment:
| Q |
7 |
aaaggaaatccaaatgtagagttgtggttagacaaaagaatccaaggttaatttgggcaatttatatca--taaaatttaagaaagtggaccatcagtat |
104 |
Q |
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| T |
34451043 |
aaaggaaatccaaatgtagagttgtggttagacaaaagaatccaaggttaatttgggcaatttatatcaaataaaatttaagaaagtggaccatcagtat |
34451142 |
T |
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| Q |
105 |
gccaaatcattcgcgggaatatgccaatttatatcatatg |
144 |
Q |
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| T |
34451143 |
gccaaatcattcgcgggaatatgccaatttatatcatatg |
34451182 |
T |
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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 34451439 - 34451538
Alignment:
| Q |
217 |
catacctatattcctctatctttctcttcactcattttaacttgaatagtttgnnnnnnngttacaattcacatgatcaaagagttgaagattcatctca |
316 |
Q |
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| T |
34451439 |
catacctatattcctctatctttctcttcactcattttaacttgaatagtttg-ttttttgttacaattcacatgatcaaagagttgaagattcatctca |
34451537 |
T |
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