View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_low_26 (Length: 313)
Name: NF3115_low_26
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 4194519 - 4194239
Alignment:
| Q |
1 |
atttccatctatttgcgtgatttgtttcgtgatgtatgtctatataactagtcctgtgttgaaactttttggtagatgatgtggccaagttatacgcaat |
100 |
Q |
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| T |
4194519 |
atttccatctatttgcgtgatttgtttcgtgatgtatgtctata--actagtcctgtgttgaaactttttggtagatgatgtggccaagttatacgcaat |
4194422 |
T |
|
| Q |
101 |
actagatactgctaccatattttctgacattcagtctagttgaaattgaggactaaaatagtatcacactgtttgggaaaacaaaatacattaatgtctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4194421 |
actagatactgctaccatattttctgacattcagtctagttgaaattgaggactaaaatagtatcacactgtttgggaaaacaaaatacattaatgtctt |
4194322 |
T |
|
| Q |
201 |
gttgagcgtcattcacaatatccatgcttttggattggtggaatgacatgtaatggagtggattggaattgtattaattgtaatatggttggtt |
294 |
Q |
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| T |
4194321 |
gttgagcgtcattcacaatatccatgcttttggattggtggaat-----------gagtggattggaattgtattaattgtaatatggttggtt |
4194239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 50772789 - 50772932
Alignment:
| Q |
84 |
gccaagttatacgcaatactagatactgctaccatattttctgacattcagtctagttgaaattgaggactaaaatagtatcacactgtttgggaaaaca |
183 |
Q |
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|||||||| || |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50772789 |
gccaagttgtatgcaatactagattctcctaccatattttctgatattcagtctagttgaaattgaggactaaaatagtatcacagcgtttgggaaaac- |
50772887 |
T |
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| Q |
184 |
aaatacattaatgtcttgttgagcgtcattcacaatatccatgct |
228 |
Q |
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||| || |||||||||||| ||||||||||||||| ||||||||| |
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| T |
50772888 |
aaacactttaatgtcttgtcgagcgtcattcacaagatccatgct |
50772932 |
T |
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