View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_low_27 (Length: 313)
Name: NF3115_low_27
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_27 |
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| [»] chr7 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 55246727 - 55246566
Alignment:
| Q |
161 |
caatatttaaccttaaataaaataagtagatttttgtatttttacataagtaacg-ata----ct--------ttgggatcatcatccactagatggttg |
247 |
Q |
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| T |
55246727 |
caatatttaaccttaaataaaataagtagatttttgtatttttacagaagtaacggatatcttctaattaaagttgggatcatcatccactagatggttg |
55246628 |
T |
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| Q |
248 |
gtttctcacgggaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgac |
309 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||| | || |||||||| |
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| T |
55246627 |
gtttctcatgggaaaattaattttctgacattcaaaacgtcatatttacatatagaaatgac |
55246566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 55246872 - 55246796
Alignment:
| Q |
16 |
aattatttttgaaagatacacatacattgatttaacaaaggagactaaaatttctgacatgaaatatatattgtgga |
92 |
Q |
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| T |
55246872 |
aatttttttttaaagatacacatacattgatttaacaaaggaaactaaaatttctcacatgaaatatatattgtgga |
55246796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 9041871 - 9041925
Alignment:
| Q |
259 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgttt |
313 |
Q |
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| T |
9041871 |
gaaatttgcttttatgacattcaaaacgtcatattgatacatggaaatgacgttt |
9041925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 55245971 - 55246025
Alignment:
| Q |
259 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgttt |
313 |
Q |
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|||||||| |||| |||| |||||||||||||||| | ||||||||||||||||| |
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| T |
55245971 |
gaaaattgtttttttgacgttcaaaacgtcatattgacacatggaaatgacgttt |
55246025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 53687701 - 53687735
Alignment:
| Q |
259 |
gaaaattgcttttctgacattcaaaacgtcatatt |
293 |
Q |
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| T |
53687701 |
gaaaattacttttctgacattcaaaacgtcatatt |
53687735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 53896839 - 53896785
Alignment:
| Q |
259 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgttt |
313 |
Q |
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|||||||||||||||||||| |||| | ||||| | | ||||||||||||||||| |
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| T |
53896839 |
gaaaattgcttttctgacatacaaagcttcataatgacacatggaaatgacgttt |
53896785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 4996420 - 4996470
Alignment:
| Q |
263 |
attgcttttctgacattcaaaacgtcatatttatacatggaaatgacgttt |
313 |
Q |
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||||||||||||||||||||||||||||||| | ||||| ||||||||||| |
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| T |
4996420 |
attgcttttctgacattcaaaacgtcatattgacacatgaaaatgacgttt |
4996470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 4997227 - 4997173
Alignment:
| Q |
259 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgttt |
313 |
Q |
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||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
4997227 |
gaaaattgcttttttgacattcaaaacttcatattgacacatggaaatgacgttt |
4997173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 48850480 - 48850530
Alignment:
| Q |
259 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgac |
309 |
Q |
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||||||||| ||||||||||||||||||| ||||| | ||||| ||||||| |
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| T |
48850480 |
gaaaattgcatttctgacattcaaaacgttatattgacacatgaaaatgac |
48850530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 1634993 - 1634943
Alignment:
| Q |
263 |
attgcttttctgacattcaaaacgtcatatttatacatggaaatgacgttt |
313 |
Q |
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| T |
1634993 |
attgcttttctgacattcaaaacgttatattgacacatggaaatgacgttt |
1634943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 4222843 - 4222799
Alignment:
| Q |
269 |
tttctgacattcaaaacgtcatatttatacatggaaatgacgttt |
313 |
Q |
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|||||||| |||||||||||||||| | ||||| ||||||||||| |
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| T |
4222843 |
tttctgaccttcaaaacgtcatattgacacatgaaaatgacgttt |
4222799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 38052580 - 38052630
Alignment:
| Q |
259 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgac |
309 |
Q |
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||||||||||||||||||||| ||||||||||||| | | ||||||||||| |
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| T |
38052580 |
gaaaattgcttttctgacattgaaaacgtcatattaacatatggaaatgac |
38052630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 31868333 - 31868387
Alignment:
| Q |
259 |
gaaaattgcttttctgacattcaaaacgtcatatttatacatggaaatgacgttt |
313 |
Q |
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||||||||||||| ||| |||||||||||||| || | ||||| ||||||||||| |
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| T |
31868333 |
gaaaattgcttttttgatattcaaaacgtcatgttgacacatgaaaatgacgttt |
31868387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 21510783 - 21510828
Alignment:
| Q |
264 |
ttgcttttctgacattcaaaacgtcatatttatacatggaaatgac |
309 |
Q |
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||||||||| |||||||||||| ||||| | ||||||||||||||| |
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| T |
21510783 |
ttgcttttccgacattcaaaacttcataataatacatggaaatgac |
21510828 |
T |
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