View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3115_low_3 (Length: 697)

Name: NF3115_low_3
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3115_low_3
NF3115_low_3
[»] chr5 (1 HSPs)
chr5 (18-674)||(19451163-19451819)


Alignment Details
Target: chr5 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 18 - 674
Target Start/End: Original strand, 19451163 - 19451819
Alignment:
Q  18 ataatccatacaagaacaactcccatctttaaagtgatgaaatcgaacacgatctcttacaattatctccacattgtaaattctagatattaatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19451163 ataatccatacaagaacaactcccatctttaaagtgatgaaaccgaacacgatctcttacaattatctccacattgtaaattctagatattaatttagta 19451262  T
Q  118 accttatgacaatcattacacactctaagattcttaaacactcttattggcatgcctggttttgaattcaaaagcccaaaagctatggccaatctctcac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19451263 accttatgacaatcattacacactctaagattcttaaacactcttattggcatgcttggttttgaattcaaaagcccaaaagctatggccaatctctcac 19451362  T
Q  218 tatgcaacctcatagtattctgtttcccttcattaatctcatcaatcaatggtgctcctgaataatcaggtaaataccctacagattctagtttctcctg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19451363 tatgcaacctcatagtattctgtttcccttcattaatctcatcaatcaatggtgctcctgaataatcaggtaaataccctacagattctagtttctcctg 19451462  T
Q  318 aatttcattcatgaacttgtatatctctttactttgtggatgattggtatctccggcaaaaaattcatgagcagcaccatttatctctattaaactacaa 417  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19451463 aatttcattcatgaacttgtatatatctttactttgtggatgattggtgtctccggcaaaaaattcatgagcagcaccgtttatctctattaaactacaa 19451562  T
Q  418 ccaggctctttactcacacccttatcattcattagcttacgaagcaaccctacatcattccacctactagctgaagcatacactttcgacaaaagaacat 517  Q
    ||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19451563 ccaggctttttactcacacccttatcattcattagctttctaagcaaccctacatcattccatctactagctgaagcatacactttcgacaaaagaacat 19451662  T
Q  518 aagcaccaccacaaacactcccgtttgactcaaaaacttgctttgccatttcttcacttagctcaatacttgcatgttgcttataacaagcatctaaaag 617  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19451663 aagcaccaccacaaacactcccgtttgactcaaaaatttgctttgccatttcttcacttagctcaacacttgcatgttgcttataacaagcatctaaaag 19451762  T
Q  618 actcctccaaattacagcatctggtttaatcggcatttctgaaatgacattcagagc 674  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||    
T  19451763 actcctccaaattacagcatctggtttaatcggcatttccgaaaccacattgagagc 19451819  T

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