View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3115_low_35 (Length: 257)
Name: NF3115_low_35
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_35 |
 | |
|
| [»] scaffold0064 (2 HSPs) |
| | |
|
| [»] scaffold0039 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 19097979 - 19097802
Alignment:
| Q |
1 |
ttattatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19097979 |
ttattatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcatatgttgggtctaaattagagctg |
19097880 |
T |
|
| Q |
101 |
tgcgaacttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19097879 |
tgcgaacttatgattatgttgtttggctgaattgtttaaaatgcgtgtccaaagtcagattttgattgtgttgcagaa |
19097802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 25404642 - 25404465
Alignment:
| Q |
1 |
ttattatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
25404642 |
ttattatatatgcaaaaagttgttagtgatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgctgggtttaatttagagctg |
25404543 |
T |
|
| Q |
101 |
tgcgaacttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25404542 |
tgcgaacttatgattatgttgtttggcttaattgtttaaaatgcgtgtccaaagtcggattttgattgtgttgcagaa |
25404465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 25409218 - 25409041
Alignment:
| Q |
1 |
ttattatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
25409218 |
ttattatatatgcaaaaagttgttagtgatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgctgggtttaatttagagctg |
25409119 |
T |
|
| Q |
101 |
tgcgaacttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25409118 |
tgcgaacttatgattatgttgtttggcttaattgtttaaaatgcgtgtccaaagtcggattttgattgtgttgcagaa |
25409041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 24952568 - 24952741
Alignment:
| Q |
5 |
tatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcg |
104 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| | ||| |
|
|
| T |
24952568 |
tatacatgcaaaaagttgttagtagcgacatctcttggaatgtaggcaagtgtctgaaattgttaacttacgtgtgtatggtctaaattagagttgtgca |
24952667 |
T |
|
| Q |
105 |
aacttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
|| || |||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
24952668 |
aatttgtgattacgttgtttggctgaattgtttaagatgcgtacccaatgttggattttgattgtgttgcagaa |
24952741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 24952377 - 24952424
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaa |
53 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24952377 |
atatatgcaaaaagttgttagtagtgacatcacttggaatgtaggcaa |
24952424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 24952450 - 24952533
Alignment:
| Q |
91 |
attagagctatgcgaacttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgca |
175 |
Q |
| |
|
||| ||||| |||||| ||||||||| ||| |||||||||||||||||| ||| |||| || || ||||| || |||||||||| |
|
|
| T |
24952450 |
atttgagctgtgcgaatttatgattacgtt-tttggctgaattgtttaagatgtgtgtgcagggtcggattctgtttgtgttgca |
24952533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 19482933 - 19482761
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19482933 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctgtgcga |
19482834 |
T |
|
| Q |
106 |
acttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
19482833 |
acttatgattatgttgtttggctgaattgtttaaaatgcatgtccaaagtcggattttgattgtgttgcagaa |
19482761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 25475636 - 25475464
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25475636 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctgtgcga |
25475537 |
T |
|
| Q |
106 |
acttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
25475536 |
acttatgattatgttgtttggctgaattgtttaaaatgcatgtccaaagtcggattttgattgtgttgcagaa |
25475464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 9818101 - 9817929
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9818101 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctgtgcga |
9818002 |
T |
|
| Q |
106 |
acttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
9818001 |
acttatgattatgttgtttggctgaattgtttaaaatgcatgtccaaagtcggattttgattgtgttgcagaa |
9817929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 18451784 - 18451956
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
18451784 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagttgtgcga |
18451883 |
T |
|
| Q |
106 |
acttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
18451884 |
acttatgattatgttgtttggctgaattgtttaaaatgcatgtccaaagtcggattttgattgtgttgcagaa |
18451956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 21840361 - 21840533
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcga |
105 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21840361 |
atatatgcaaaaagttgttagtaatgatatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctgtgcga |
21840460 |
T |
|
| Q |
106 |
acttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
21840461 |
acttatgattatgttgtttggctgaattgcttaaaatgcatgtccaaagtcggattttgattgtgttgcagaa |
21840533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 21231934 - 21232113
Alignment:
| Q |
1 |
ttattatatatgcaaaaagttgttagta--atgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21231934 |
ttattatatatgcaaaaagttgttagtataatgacatcacttggaatgtagacaagtgtttgaaattgttaacttgcgtatgttgggtttaaattagagc |
21232033 |
T |
|
| Q |
99 |
tatgcgaacttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21232034 |
tttgcgaacttatgattatgttgtttggctgaattgtttaaaatgcgtgtccaaagtcggattttgattgtgttgcagaa |
21232113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 21231545 - 21231687
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| | ||| |||||| |||||||||| ||| | |
|
|
| T |
21231545 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgcctgaaactgttaagttgcttgtgtagggtctgaattagagctgtgcaa |
21231644 |
T |
|
| Q |
106 |
acttatgattaagttgtttggctgaattgtttaaaatgcgtgt |
148 |
Q |
| |
|
| ||||||||| ||||||| ||| |||||||||| ||| |||| |
|
|
| T |
21231645 |
atttatgattatgttgttttgcttaattgtttaagatgtgtgt |
21231687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 21231747 - 21231862
Alignment:
| Q |
1 |
ttattatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| ||| |||||| ||||||| || |
|
|
| T |
21231747 |
ttattatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgcctgaaactgttaagttgcgtgtgtagggtctgaattagaactg |
21231846 |
T |
|
| Q |
101 |
tgcgaacttatgatta |
116 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
21231847 |
tgcgaatttatgatta |
21231862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 20144514 - 20144338
Alignment:
| Q |
1 |
ttattatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
20144514 |
ttattatatatgcaaaaagttgttagtgatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgctgggtttaatttagagctg |
20144415 |
T |
|
| Q |
101 |
tgcgaacttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
20144414 |
tgcgaacttatgattatgttgtttggctgaattgtttaaaatgcgtg-ccaaagtcggattttgattgtgttgcagaa |
20144338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 3540122 - 3539945
Alignment:
| Q |
1 |
ttattatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |||||||| | |
|
|
| T |
3540122 |
ttattatatatgcaaaaagttgttagtagtgacatcacttggaatgtaggcaagtgcctgaaattgtgaacttgcgtgtgttgggtctgaattagagttg |
3540023 |
T |
|
| Q |
101 |
tgcgaacttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3540022 |
tgcgaacttatgattatgttgtttggctgaattgtttaagatgcgtgtccaaagtcggattttgattgtgttgcagaa |
3539945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 3540322 - 3540150
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcga |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| | |||||| ||| |||||| ||||| || | || || |
|
|
| T |
3540322 |
atatatgcaaaaagttgttagtagtgacatcacttggaatgtaggcaagtgcctgaaacagtttagttgcgtgtgtagggtctgaattaaagttgtgtga |
3540223 |
T |
|
| Q |
106 |
acttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
| ||||||||| |||||| |||||||||||||| ||| |||| || || ||||| || |||||||| |||| |
|
|
| T |
3540222 |
atttatgattatgttgttatgctgaattgtttaagatgtgtgtgcagggtcggattatgtttgtgttgtagaa |
3540150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 15009 - 15168
Alignment:
| Q |
12 |
gcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcgaacttat |
111 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||| | || |||||||| |
|
|
| T |
15009 |
gcaaaaagtagttagtagtgacatcacttggaatataggcaagtgcctgaaattgttaacttgtgta----gggtctaaattagagttgtgtgaacttat |
15104 |
T |
|
| Q |
112 |
gattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgca |
175 |
Q |
| |
|
||||| | |||||||||||||||||||| |||||||||||| || ||||||||||||||||||| |
|
|
| T |
15105 |
gattatgctgtttggctgaattgtttaagatgcgtgtccaaggtcggattttgattgtgttgca |
15168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 14796 - 14931
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagt--gtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgc |
103 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||| |||||| |||||| ||| |||| | |||| ||||||||| |
|
|
| T |
14796 |
atatatgcaaaaagttgttagtagtgaaatcacttggaatgtaggcaagtccctatgaaactgttaagttgcgtgtgtagggtttgaattcgagctatgc |
14895 |
T |
|
| Q |
104 |
gaacttatgattaagttgtttggctgaattgtttaa |
139 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||| |
|
|
| T |
14896 |
gattttatgattatgttgtttggctgaattgtttaa |
14931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 86484 - 86650
Alignment:
| Q |
5 |
tatatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcg |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||| |||||||| | | | |
|
|
| T |
86484 |
tatatatgcaaaaagttgttagtagtgacatcacttggaatgtaggcaagtgcatgaaattgttaccttg----tgtagggtctgaattagagttgtatg |
86579 |
T |
|
| Q |
105 |
aacttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgca |
175 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||| || || ||||||| ||||||||||| |
|
|
| T |
86580 |
aacttatgattatgttgtttggctgaattgtttaagatgcgtgtcaaaggtcggatttttattgtgttgca |
86650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 86280 - 86449
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcga |
105 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||||| |||||| | | |||| | |||| ||||| ||||| |
|
|
| T |
86280 |
atatatgcaaaaagttgttcgtagtgacatcactcggaatgtaggcaagtgcctgaaattgttaagttgcgtgtttagggtttgaattcgagctgtgcga |
86379 |
T |
|
| Q |
106 |
acttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgca |
175 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| ||| || ||||| || |||||||||| |
|
|
| T |
86380 |
ttttatgattatgttgtttggctgaattgtttaaaatgtgtgtgcaaggtcggattctgtttgtgttgca |
86449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 18404524 - 18404696
Alignment:
| Q |
6 |
atatatgcaaaaagttgttagtaatgacatcacttggaatgtaggcaagtgtctgaaattgttaacttgcgtatgttgggtctaaattagagctatgcga |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| | |||| | ||| |||||| ||||| || | ||||| |
|
|
| T |
18404524 |
atatatgcaaaaagttgttagtagtgacatcacttggaatgtaggcaagtgcctgaaactgtttagttgcatgtgtagggtctgaattaaagttgtgcga |
18404623 |
T |
|
| Q |
106 |
acttatgattaagttgtttggctgaattgtttaaaatgcgtgtccaaagttggattttgattgtgttgcagaa |
178 |
Q |
| |
|
| ||||||||| ||||||| |||||||||||||| ||| |||| || || ||||| || |||||||| |||| |
|
|
| T |
18404624 |
atttatgattatgttgttttgctgaattgtttaagatgtgtgtgcagggtcggattctgtttgtgttgtagaa |
18404696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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