View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_low_40 (Length: 237)
Name: NF3115_low_40
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9222928 - 9223153
Alignment:
| Q |
1 |
tgttgtagaaagctaaaaacaagacaattattgttgttgaatgagctgaaaataggagcagataccgtttttccttggaaagcttggaagaatgagagga |
100 |
Q |
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| T |
9222928 |
tgttgtagaaagctaaaaacaagacaattattgt---tgaatgagctgaaaataggagcagataccgtttttccttggaaagcttggaagaatgagagga |
9223024 |
T |
|
| Q |
101 |
aattgcacacacatctacattcatctgcaagtatctcagacaattcttgtatgtttttatttttgaaggcagaataaagtttcataactgcatctagggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9223025 |
aattgcacacacatctacattcatctgcaagtatctcagacaattcttgtatgtttttatttttgaaggcagaataaagtttcataactgcatctagggc |
9223124 |
T |
|
| Q |
201 |
ttgatcattatcttctcccacaggttctg |
229 |
Q |
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||||||||||||||||||||| ||||||| |
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| T |
9223125 |
ttgatcattatcttctcccactggttctg |
9223153 |
T |
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