View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3115_low_42 (Length: 232)

Name: NF3115_low_42
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3115_low_42
NF3115_low_42
[»] chr3 (27 HSPs)
chr3 (17-215)||(3015905-3016103)
chr3 (128-215)||(3044435-3044522)
chr3 (39-115)||(38462196-38462273)
chr3 (39-107)||(41028929-41028998)
chr3 (57-120)||(20173984-20174048)
chr3 (48-127)||(50016045-50016125)
chr3 (41-122)||(39971227-39971309)
chr3 (65-123)||(48597694-48597752)
chr3 (39-107)||(22232749-22232818)
chr3 (39-107)||(44374722-44374791)
chr3 (39-98)||(20192684-20192744)
chr3 (41-100)||(22667355-22667415)
chr3 (41-100)||(22723994-22724054)
chr3 (37-96)||(23808306-23808366)
chr3 (39-114)||(2865737-2865812)
chr3 (39-82)||(26492903-26492946)
chr3 (39-101)||(49586994-49587056)
chr3 (39-121)||(51278235-51278318)
chr3 (41-106)||(24268235-24268301)
chr3 (39-92)||(40122830-40122884)
chr3 (65-122)||(13804696-13804753)
chr3 (34-106)||(16790429-16790502)
chr3 (39-83)||(34954030-34954075)
chr3 (41-101)||(34958257-34958318)
chr3 (34-106)||(44284131-44284204)
chr3 (58-93)||(5435924-5435960)
chr3 (39-106)||(27792796-27792864)
[»] chr4 (26 HSPs)
chr4 (39-115)||(44319865-44319941)
chr4 (39-101)||(47970247-47970310)
chr4 (39-113)||(54325115-54325190)
chr4 (39-142)||(24929376-24929485)
chr4 (39-106)||(4191663-4191732)
chr4 (39-123)||(36734800-36734885)
chr4 (57-124)||(4471077-4471145)
chr4 (39-126)||(8703698-8703788)
chr4 (49-98)||(21593099-21593149)
chr4 (57-126)||(40709476-40709546)
chr4 (41-110)||(3891497-3891565)
chr4 (39-95)||(30338670-30338727)
chr4 (50-122)||(51555956-51556029)
chr4 (41-100)||(4663776-4663836)
chr4 (39-106)||(21157692-21157760)
chr4 (52-123)||(41050603-41050675)
chr4 (39-106)||(23819014-23819081)
chr4 (39-124)||(22684594-22684680)
chr4 (34-98)||(51044531-51044597)
chr4 (65-106)||(2980576-2980617)
chr4 (69-126)||(23525674-23525731)
chr4 (41-96)||(3662283-3662338)
chr4 (48-107)||(45128397-45128457)
chr4 (41-104)||(46013380-46013444)
chr4 (41-104)||(46247144-46247208)
chr4 (87-123)||(46860276-46860312)
[»] chr7 (24 HSPs)
chr7 (42-142)||(27481375-27481481)
chr7 (41-115)||(3610820-3610895)
chr7 (41-115)||(43328164-43328239)
chr7 (65-123)||(22388009-22388067)
chr7 (34-106)||(7244626-7244699)
chr7 (39-107)||(7274384-7274452)
chr7 (39-98)||(33894555-33894614)
chr7 (69-123)||(47528042-47528096)
chr7 (39-107)||(35536030-35536099)
chr7 (39-114)||(9527168-9527244)
chr7 (40-99)||(30496635-30496695)
chr7 (39-106)||(45593797-45593865)
chr7 (45-142)||(753288-753391)
chr7 (57-124)||(47559705-47559772)
chr7 (69-115)||(23721416-23721462)
chr7 (41-98)||(28165023-28165081)
chr7 (39-91)||(1417203-1417256)
chr7 (58-115)||(45078208-45078265)
chr7 (65-106)||(47006972-47007013)
chr7 (67-123)||(941451-941507)
chr7 (39-90)||(5006587-5006639)
chr7 (39-98)||(5276156-5276216)
chr7 (42-101)||(24973873-24973933)
chr7 (65-101)||(27492724-27492760)
[»] chr2 (37 HSPs)
chr2 (40-121)||(34339032-34339114)
chr2 (42-122)||(3235464-3235546)
chr2 (39-109)||(37053515-37053586)
chr2 (49-122)||(33197327-33197401)
chr2 (65-123)||(42974259-42974317)
chr2 (39-115)||(33192108-33192185)
chr2 (39-98)||(18962116-18962176)
chr2 (39-106)||(33267594-33267662)
chr2 (41-99)||(10143103-10143162)
chr2 (39-145)||(11344362-11344468)
chr2 (39-109)||(17952779-17952850)
chr2 (39-147)||(32098386-32098503)
chr2 (41-94)||(13866825-13866879)
chr2 (41-80)||(26857190-26857230)
chr2 (39-115)||(29503161-29503236)
chr2 (39-107)||(35809856-35809924)
chr2 (60-115)||(2400071-2400126)
chr2 (39-101)||(3673736-3673799)
chr2 (39-100)||(14277971-14278034)
chr2 (77-115)||(9404515-9404553)
chr2 (64-106)||(10190203-10190245)
chr2 (88-126)||(15377463-15377501)
chr2 (42-99)||(34054982-34055040)
chr2 (51-115)||(1493603-1493668)
chr2 (41-106)||(7103563-7103627)
chr2 (34-98)||(7282950-7283015)
chr2 (65-122)||(11393760-11393817)
chr2 (65-122)||(11410421-11410478)
chr2 (65-98)||(26522729-26522762)
chr2 (39-107)||(28803584-28803653)
chr2 (39-115)||(35755580-35755657)
chr2 (51-110)||(12215727-12215787)
chr2 (39-126)||(13630359-13630447)
chr2 (39-99)||(33942082-33942142)
chr2 (40-107)||(37766721-37766789)
chr2 (48-115)||(38239638-38239706)
chr2 (41-92)||(43299483-43299535)
[»] chr8 (23 HSPs)
chr8 (41-107)||(14482125-14482192)
chr8 (48-120)||(26716525-26716596)
chr8 (39-142)||(8536127-8536235)
chr8 (44-107)||(39392744-39392808)
chr8 (72-114)||(9912943-9912985)
chr8 (47-123)||(34563157-34563234)
chr8 (43-126)||(29699158-29699242)
chr8 (65-108)||(26813910-26813953)
chr8 (34-100)||(41001229-41001296)
chr8 (41-106)||(35534941-35535007)
chr8 (39-100)||(42597331-42597393)
chr8 (39-123)||(4558705-4558790)
chr8 (39-123)||(12972763-12972848)
chr8 (39-123)||(13561390-13561475)
chr8 (42-110)||(30013139-30013207)
chr8 (69-126)||(42508672-42508729)
chr8 (39-97)||(5290574-5290628)
chr8 (40-99)||(26215427-26215487)
chr8 (40-107)||(28769418-28769486)
chr8 (39-98)||(34770824-34770884)
chr8 (39-106)||(35298556-35298624)
chr8 (41-120)||(38036192-38036272)
chr8 (39-98)||(43368778-43368838)
[»] chr6 (28 HSPs)
chr6 (41-123)||(9027484-9027567)
chr6 (39-98)||(2456884-2456943)
chr6 (41-119)||(29269808-29269886)
chr6 (65-126)||(31461582-31461643)
chr6 (39-123)||(1497887-1497973)
chr6 (39-125)||(7713930-7714017)
chr6 (41-107)||(24774681-24774748)
chr6 (39-112)||(3169323-3169397)
chr6 (39-124)||(9732382-9732468)
chr6 (40-114)||(31564767-31564840)
chr6 (40-101)||(33259745-33259807)
chr6 (46-122)||(2514610-2514687)
chr6 (65-122)||(31668790-31668847)
chr6 (39-121)||(7351686-7351769)
chr6 (43-82)||(10616994-10617033)
chr6 (39-125)||(13360641-13360727)
chr6 (88-142)||(14340931-14340990)
chr6 (34-80)||(31583651-31583698)
chr6 (58-107)||(7148590-7148640)
chr6 (40-105)||(24836278-24836344)
chr6 (65-107)||(29249397-29249439)
chr6 (67-121)||(31337932-31337986)
chr6 (50-122)||(5884947-5885020)
chr6 (49-106)||(8010281-8010338)
chr6 (39-107)||(29274307-29274376)
chr6 (34-106)||(31672541-31672614)
chr6 (39-126)||(33068639-33068727)
chr6 (41-80)||(34633206-34633246)
[»] chr5 (25 HSPs)
chr5 (65-123)||(29588787-29588845)
chr5 (39-142)||(20982213-20982322)
chr5 (39-106)||(19177403-19177471)
chr5 (39-115)||(32059667-32059743)
chr5 (39-122)||(37063152-37063236)
chr5 (39-119)||(28586844-28586925)
chr5 (42-107)||(35095864-35095930)
chr5 (49-113)||(11095557-11095622)
chr5 (34-97)||(7096200-7096264)
chr5 (39-86)||(14295450-14295498)
chr5 (70-122)||(14961852-14961904)
chr5 (70-121)||(25079655-25079707)
chr5 (70-121)||(25137624-25137676)
chr5 (39-121)||(6738485-6738568)
chr5 (57-115)||(10391268-10391327)
chr5 (57-123)||(26516205-26516272)
chr5 (52-126)||(27106014-27106089)
chr5 (49-107)||(32172576-32172635)
chr5 (41-100)||(33234292-33234351)
chr5 (39-101)||(35135740-35135803)
chr5 (65-123)||(29115318-29115376)
chr5 (40-101)||(36646169-36646231)
chr5 (40-119)||(11835187-11835268)
chr5 (39-82)||(10303749-10303793)
chr5 (40-79)||(29117009-29117049)
[»] scaffold0654 (1 HSPs)
scaffold0654 (39-114)||(6715-6791)
[»] scaffold0014 (1 HSPs)
scaffold0014 (39-114)||(116634-116710)
[»] scaffold0590 (1 HSPs)
scaffold0590 (46-122)||(1159-1236)
[»] scaffold0275 (1 HSPs)
scaffold0275 (46-122)||(2739-2816)
[»] scaffold0024 (1 HSPs)
scaffold0024 (39-123)||(27483-27568)
[»] chr1 (31 HSPs)
chr1 (39-120)||(45107533-45107614)
chr1 (49-107)||(870968-871027)
chr1 (39-97)||(15360827-15360886)
chr1 (34-107)||(23373363-23373437)
chr1 (45-122)||(30259571-30259649)
chr1 (39-123)||(4363710-4363794)
chr1 (50-106)||(6659627-6659684)
chr1 (39-131)||(12519048-12519141)
chr1 (41-114)||(12763028-12763100)
chr1 (45-101)||(18434562-18434619)
chr1 (39-80)||(24502913-24502954)
chr1 (39-107)||(40357964-40358033)
chr1 (44-123)||(35689626-35689706)
chr1 (40-99)||(37818395-37818455)
chr1 (65-101)||(41638178-41638214)
chr1 (67-126)||(24857621-24857680)
chr1 (40-122)||(37175949-37176032)
chr1 (52-126)||(49557045-49557120)
chr1 (41-107)||(26179416-26179482)
chr1 (40-107)||(48282056-48282125)
chr1 (39-123)||(608343-608428)
chr1 (39-122)||(4276714-4276799)
chr1 (39-79)||(15709818-15709859)
chr1 (43-107)||(23895259-23895324)
chr1 (42-102)||(43029482-43029543)
chr1 (39-99)||(45999366-45999427)
chr1 (41-101)||(46499934-46499995)
chr1 (41-102)||(4548648-4548711)
chr1 (65-101)||(13037793-13037829)
chr1 (41-113)||(46712290-46712362)
chr1 (34-106)||(48748656-48748728)
[»] scaffold0053 (1 HSPs)
scaffold0053 (47-98)||(20111-20163)
[»] scaffold0022 (1 HSPs)
scaffold0022 (45-107)||(143145-143208)
[»] scaffold0428 (1 HSPs)
scaffold0428 (40-101)||(3833-3895)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 3015905 - 3016103
Alignment:
Q  17 cagcttataccttataggcttctgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3015905 cagcttataccttataggcttctgaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgt 3016004  T
Q  117 tataagcactaagttgtttatccaaaaagagcataaagctaacaacatcaaatatcaattttaagcgtgcattcatgcaaagtgatgtcattggagtat 215  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||  || ||||||||||||    
T  3016005 tataagcactaagttatttatccaaaaagagcataaagctaacaacatcaaatatcaactttgagggtgcattcatgcaaaggcatctcattggagtat 3016103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 3044435 - 3044522
Alignment:
Q  128 agttgtttatccaaaaagagcataaagctaacaacatcaaatatcaattttaagcgtgcattcatgcaaagtgatgtcattggagtat 215  Q
    ||||||||||||||| |  || || | |||||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||||||    
T  3044435 agttgtttatccaaacatggcctacacctaacaacgtcaaatatcaactttgagtgtgcattcatgcaaagtgatctcattggagtat 3044522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 38462273 - 38462196
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    ||||||||||||||||| ||||||||||| | ||||||||||| | ||| |||| ||||||||| |||||||||||||    
T  38462273 tgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttatg 38462196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 41028929 - 41028998
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||||||| ||||||| ||||| ||||| ||||||||||||| | |||||||||||||||||| |||||    
T  41028929 tgaaaacagattgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataag 41028998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 20173984 - 20174048
Alignment:
Q  57 attttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttata 120  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||  |||||||||| ||||    
T  20173984 attttatcttttgttatagaaataactaatacataagcacttatataactagtgtttatgctata 20174048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 50016045 - 50016125
Alignment:
Q  48 tttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcacta 127  Q
    |||||||| ||||||| |||| |||||||||||||  |||||||||||||||||| ||||| | |||| |||||| |||||    
T  50016045 tttgactttattttatatttggttatagaaatagtccatacataagcacttatatgataagggcttatattataaacacta 50016125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 39971309 - 39971227
Alignment:
Q  41 aaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||||| |||| ||| ||||||||||| |||||| || ||  | |||||||||||||||||| ||||||||| ||||||||||    
T  39971309 aaaacaatttggctttattttatcttttgttatataagtaacttatacataagcacttatatgataagtgttgatgttataag 39971227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 48597694 - 48597752
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||||||||||||||| | ||||||||||||| |||||||||| || || |||||||    
T  48597694 tttgttatagaaatagtttaaacataagcacttacataataagtgattgtgctataagc 48597752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 22232818 - 22232749
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||||||||||||||| |||||||| ||||||||| |||||| | |||||| |||| |||||| |||||    
T  22232818 tgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 44374722 - 44374791
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||||| |||||||| ||||||||||| |||| ||| |||| | |||||||||||||||||| |||||    
T  44374722 tgaaaacaatttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgataag 44374791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 20192684 - 20192744
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcactta 98  Q
    ||||||| ||||||||| ||||||||||| |||||| |||||| | |||||||||||||||    
T  20192684 tgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcactta 20192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 22667415 - 22667355
Alignment:
Q  41 aaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttata 100  Q
    ||||||||||| |||||||||||| |||||||||||| ||| | | |||||||||||||||    
T  22667415 aaaacagtttggcttcattttatcttttgttatagaagtagcttaaacataagcacttata 22667355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 22724054 - 22723994
Alignment:
Q  41 aaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttata 100  Q
    ||||||||||| |||||||||||| |||||||||||| ||| | | |||||||||||||||    
T  22724054 aaaacagtttggcttcattttatcttttgttatagaagtagcttaaacataagcacttata 22723994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 23808306 - 23808366
Alignment:
Q  37 tctgaaaacagtttgacttcatttta-tctttgttatagaaatagttaatacataagcact 96  Q
    ||||||||||||||||||| |||||| ||| | |||||||||||| | |||||||||||||    
T  23808306 tctgaaaacagtttgacttaattttattctctattatagaaatagcttatacataagcact 23808366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 2865737 - 2865812
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgtttat 114  Q
    |||||||| ||||||||  ||||| ||||||||||||||||| | ||| |||| | |||| | |||||||||||||    
T  2865737 tgaaaacaatttgactttgttttaactttgttatagaaatagcttatatataatcccttagaaaataagtgtttat 2865812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 26492946 - 26492903
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagtt 82  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||    
T  26492946 tgaaaacagtttgactttattttatatttggtatagaaatagtt 26492903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 49586994 - 49587056
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatat 101  Q
    ||||||||||||||||| |||||||| |||||||||||||||| | |||  |||||||||||||    
T  49586994 tgaaaacagtttgactttattttatcttttgttatagaaatagcttata-gtaagcacttatat 49587056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 51278235 - 51278318
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataa 121  Q
    ||||||||||||||||| |||| || ||| ||||||||||||| | |||||| |||| |||||| |||| || |||| ||||||    
T  51278235 tgaaaacagtttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgataaatgcttatattataa 51278318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 24268235 - 24268301
Alignment:
Q  41 aaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataa 106  Q
    |||| |||||||||| |||||| |||| | ||||||||||||| |||||||||||||| ||| ||||    
T  24268235 aaaaaagtttgacttgattttaacttttgctatagaaatagtttatacataagcacttgtatgataa 24268301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 40122830 - 40122884
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataag 92  Q
    ||||||||||||||||| |||||||| |||||||| ||||||| | |||||||||    
T  40122830 tgaaaacagtttgactttattttatcttttgttattgaaatagcttatacataag 40122884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 13804753 - 13804696
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||||||||||||||||| |||||||| |||||| || || || ||||||| ||||||    
T  13804753 tttgttatagaaatagtttatacataaacacttaaatgatcagcgtttatgctataag 13804696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 16790429 - 16790502
Alignment:
Q  34 gcttctgaaaacagtttgacttcattttatct-ttgttatagaaatagttaatacataagcacttatataataa 106  Q
    |||| |||||| | ||||| || ||||||||| |||||||| |||||| | |||||||||||||||||| ||||    
T  16790429 gcttatgaaaataatttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgataa 16790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 34954075 - 34954030
Alignment:
Q  39 tgaaaacagtttgacttcattttatctt-tgttatagaaatagtta 83  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||    
T  34954075 tgaaaacagcttgactttattttatcttgtgttatagaaatagtta 34954030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 34958318 - 34958257
Alignment:
Q  41 aaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatat 101  Q
    ||||||| ||||||| |||||||||| |||||||||||||||| || ||||||  |||||||    
T  34958318 aaaacagcttgactttattttatcttgtgttatagaaatagtttattcataagtgcttatat 34958257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 44284131 - 44284204
Alignment:
Q  34 gcttctgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataa 106  Q
    |||| |||||||||||||||||  |||||| ||| ||||||||||||| | |||||| || |||||||| ||||    
T  44284131 gcttatgaaaacagtttgactttgttttattttttgttatagaaatagcttatacattagtacttatatgataa 44284204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 5435960 - 5435924
Alignment:
Q  58 ttttatctttg-ttatagaaatagttaatacataagc 93  Q
    ||||||||||| |||||||||||||||||||||||||    
T  5435960 ttttatctttggttatagaaatagttaatacataagc 5435924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 27792864 - 27792796
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataa 106  Q
    |||||| |||||||| | ||||||||||| ||| | ||||||| | |||||||||||||||||| ||||    
T  27792864 tgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgataa 27792796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 44319941 - 44319865
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||| |||||| ||||||||||| ||||||| |||||    
T  44319941 tgaaaacagttcgactttattttatcttttttatagaaatagtttatacatgagcacttatatgataagtgcttatg 44319865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 47970310 - 47970247
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatat 101  Q
    |||||| |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatat 47970247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 54325115 - 54325190
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgttta 113  Q
    ||||||||||||||||| ||||||||||| || |||||||||||| ||||| |||||||||||| |||||| ||||    
T  54325115 tgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgataagtattta 54325190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 24929485 - 24929376
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcac-----taagttg 132  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||| ||||| || || |||||| ||||| | ||||||||||| |||     |||||||    
T  24929485 tgaaaacagttagactttattttatcttttgttatagaaatagttcatacaaaaacaattatatgataagagattatgttataaacactcaattaagttg 24929386  T
Q  133 tttatccaaa 142  Q
    ||||||||||    
T  24929385 tttatccaaa 24929376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 4191732 - 4191663
Alignment:
Q  39 tgaaaacagtttgacttcatttt-atcttt-gttatagaaatagttaatacataagcacttatataataa 106  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||| | |||||||||||||||||| ||||    
T  4191732 tgaaaacagtttgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgataa 4191663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 36734885 - 36734800
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||| |||||||||| |||||| |||| |||||||||| || | |||||||||||||||||| ||||  || ||||||||||||    
T  36734885 tgaaaatagtttgactttattttaccttttgttatagaaagagattatacataagcacttatatgataaaggtatatgttataagc 36734800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 4471145 - 4471077
Alignment:
Q  57 attttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagca 124  Q
    ||||||||||| |||||| |||||||| || |||||||||||||||||||| || ||||| ||||||||    
T  4471145 attttatcttttgttataaaaatagtttatgcataagcacttatataataattgcttatgctataagca 4471077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 8703698 - 8703788
Alignment:
Q  39 tgaaaacagtttga--cttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    ||||||||||||||  |||  ||||||| ||||||| |||||||| | ||||||||||||| || | |||||| |||||||||||||||||    
T  8703698 tgaaaacagtttgatacttttttttatcctttgttagagaaatagcttatacataagcactcatctgataagtatttatgttataagcact 8703788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 21593099 - 21593149
Alignment:
Q  49 ttgacttcattttatcttt-gttatagaaatagttaatacataagcactta 98  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||||||||||    
T  21593099 ttgactttattttatctttagttatagaaatagtttatacataagcactta 21593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 40709476 - 40709546
Alignment:
Q  57 attttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    ||||||||||| |||||||||| || | ||| ||||||||||||||| |||||| ||||| ||||||||||    
T  40709476 attttatcttttgttatagaaacagcttataaataagcacttatatattaagtggttatgatataagcact 40709546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 3891565 - 3891497
Alignment:
Q  41 aaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgt 110  Q
    ||||| ||| ||||| |||||||| | ||||||||||||||| || ||||||||||||||| ||||||||    
T  3891565 aaaacggttcgactttattttatcct-gttatagaaatagtttattcataagcacttatatgataagtgt 3891497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 30338670 - 30338727
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcac 95  Q
    |||||||||||| |||| ||| ||||||| ||||||||||||||| ||||||||||||    
T  30338670 tgaaaacagtttaactttattctatcttttgttatagaaatagtttatacataagcac 30338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 51555956 - 51556029
Alignment:
Q  50 tgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||||| ||||||||||| ||||||  ||||| | |||||||||||||||||| |||| || ||||||||||||    
T  51555956 tgactttattttatcttttgttataataatagcttatacataagcacttatatgataaatggttatgttataag 51556029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 4663776 - 4663836
Alignment:
Q  41 aaaacagtttgacttcattttat-ctttgttatagaaatagttaatacataagcacttata 100  Q
    |||| |||||| ||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  4663776 aaaatagtttggcttcattttattctttgttatagaaataacttatacataagcacttata 4663836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 21157760 - 21157692
Alignment:
Q  39 tgaaaacagtttgacttcattttat-ctttgttatagaaatagttaatacataagcacttatataataa 106  Q
    ||||||||||||||||| | ||||| |||||||||  |||||| | |||||||||||||||||| ||||    
T  21157760 tgaaaacagtttgactttagtttatactttgttatcaaaatagctgatacataagcacttatatgataa 21157692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 41050675 - 41050603
Alignment:
Q  52 acttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    ||||||||| |||||| ||||||||||||||| |||||| | ||||||||| ||||||| | ||| |||||||    
T  41050675 acttcatttcatcttttgttatagaaatagtttatacattaacacttatatgataagtggtcatgctataagc 41050603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 23819081 - 23819014
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataa 106  Q
    |||||||||||||||| |||||||| |||||||| ||||||  | |||||||| ||||| ||| ||||    
T  23819081 tgaaaacagtttgactacattttatatttgttatggaaataacttatacataaacacttgtatgataa 23819014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 22684594 - 22684680
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagca 124  Q
    |||||||| |||||||| |||||| | |||||||||||||||| | ||||| ||||| |||||| ||||| |  |||| ||||||||    
T  22684594 tgaaaacaatttgactttattttaccgtttgttatagaaatagcttatacagaagcatttatatgataagcgcatatggtataagca 22684680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 51044531 - 51044597
Alignment:
Q  34 gcttctgaaaaca-gtttgacttcattttatcttt-gttatagaaatagttaatacataagcactta 98  Q
    |||| |||||||| ||||||||| ||||||||||| ||||||||||||| | |||||||| ||||||    
T  51044531 gcttatgaaaacaagtttgactttattttatcttttgttatagaaatagcttatacataaacactta 51044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 2980576 - 2980617
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataa 106  Q
    |||||||||||||||| | |||||||||||||||||| ||||    
T  2980576 tttgttatagaaatagcttatacataagcacttatatgataa 2980617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 23525674 - 23525731
Alignment:
Q  69 ttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    |||||||||||| | ||||||||| ||| ||||| ||||||| |||| ||||||||||    
T  23525674 ttatagaaatagctcatacataaggactaatatattaagtgtctatgctataagcact 23525731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 3662338 - 3662283
Alignment:
Q  41 aaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcact 96  Q
    ||||||||||||||| |||||||| |||||||||| ||||||| || ||||||||||    
T  3662338 aaaacagtttgactttattttatcttttgttataggaatagtttat-cataagcact 3662283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 45128397 - 45128457
Alignment:
Q  48 tttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||| || ||||||||||| ||||||||||||||| |||||||||  ||||||| |||||    
T  45128397 tttgatttgattttatcttttgttatagaaatagtttatacataagttcttatatgataag 45128457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 46013380 - 46013444
Alignment:
Q  41 aaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataat 104  Q
    ||||||||||||||| |||||||| ||||||  |||||||||| | |||||| ||||||| ||||    
T  46013380 aaaacagtttgactttattttatcttttgttccagaaatagtttacacataaacacttatttaat 46013444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 46247208 - 46247144
Alignment:
Q  41 aaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataat 104  Q
    ||||||||||||||| |||||||| ||||||  |||||||||| | |||||| ||||||| ||||    
T  46247208 aaaacagtttgactttattttatcttttgttccagaaatagtttacacataaacacttatttaat 46247144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 46860312 - 46860276
Alignment:
Q  87 cataagcacttatataataagtgtttatgttataagc 123  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  46860312 cataagcacttatatcataagtgtttatgctataagc 46860276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 27481375 - 27481481
Alignment:
Q  42 aaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcac-----taagttgttt 135  Q
    ||||||||||||||| ||||||| |||||||||||||||| | |||||||| ||||||||||||||   |||||| |||||||||     ||||||||||    
T  27481375 aaacagtttgacttcgttttatcctttgttatagaaatagcttatacataaacacttatataataaacatttatgctataagcacctaattaagttgttt 27481474  T
Q  136 atccaaa 142  Q
    |||||||    
T  27481475 atccaaa 27481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 3610820 - 3610895
Alignment:
Q  41 aaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| | |||||||||||||||||| | |||||||||||    
T  3610820 aaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttatg 3610895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 43328239 - 43328164
Alignment:
Q  41 aaaacagtttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    |||||||||| |||| |||||||||||| |||||||||||| ||||||||||||||  |||| || ||||||||||    
T  43328239 aaaacagtttaacttaattttatctttggttatagaaatagctaatacataagcaccgatatgattagtgtttatg 43328164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 22388009 - 22388067
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||||||||||||| | || |||||||||||| || |||||||||||||||||||||    
T  22388009 tttgttatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagc 22388067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 7244699 - 7244626
Alignment:
Q  34 gcttctgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataa 106  Q
    |||| |||||||||||||||||  |||||||||| | ||||||||||| | |||||||||||||||||| ||||    
T  7244699 gcttatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataa 7244626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 7274452 - 7274384
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||||||||||  ||| |||||||||||||| ||||||||||| ||| |||||||||| ||| |||||    
T  7274452 tgaaaacagtttacctttattttatctttgttgtagaaatagtttatatataagcacttttatgataag 7274384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 33894614 - 33894555
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcactta 98  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||    
T  33894614 tgaaaacagtttgactt-attttatcttttgttatagaaatagcttatacataagcactta 33894555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 47528042 - 47528096
Alignment:
Q  69 ttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||||||||| | |||||||| ||||| ||||||||||||||||| |||||||    
T  47528042 ttatagaaatagcttatacataaacacttgtataataagtgtttatgctataagc 47528096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 35536099 - 35536030
Alignment:
Q  39 tgaaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||||| |||||||| |||||||||| |||||||||||||| | ||||||||||  |||||| |||||    
T  35536099 tgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagcctttatatgataag 35536030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 9527168 - 9527244
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttat 114  Q
    ||||||||||||||||| ||| ||||||| |||||||| ||||   ||| |||||||||| ||| ||||||||||||    
T  9527168 tgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgtatgataagtgtttat 9527244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 30496695 - 30496635
Alignment:
Q  40 gaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttat 99  Q
    ||||||| |||||||| ||||||| ||| ||||||||||||||| |||||||| |||||||    
T  30496695 gaaaacaatttgactttattttatattttgttatagaaatagtttatacataaacacttat 30496635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 45593797 - 45593865
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataa 106  Q
    ||||||||||||||||| ||||||| ||| |||| |||||||| | ||||||||||| |||||| ||||    
T  45593797 tgaaaacagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataa 45593865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 753288 - 753391
Alignment:
Q  45 cagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcac-----taagttgtttatc 138  Q
    ||||||||||| |||| || ||| ||||||||||||||  ||||| |||| ||||||| |||| |||||||| ||||| |||     |||||||||||||    
T  753288 cagtttgactttatttcatattttgttatagaaatagtgtatacacaagcgcttatatgataaatgtttatgctataaacacttaattaagttgtttatc 753387  T
Q  139 caaa 142  Q
    ||||    
T  753388 caaa 753391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 47559705 - 47559772
Alignment:
Q  57 attttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagca 124  Q
    ||||||| |||||| ||||||||  | || ||||||||||||||| || ||||||||| |||||||||    
T  47559705 attttatttttgttgtagaaataacttattcataagcacttatatgattagtgtttatattataagca 47559772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 23721462 - 23721416
Alignment:
Q  69 ttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    |||||||||||||| ||||||||||||||  || |||||||||||||    
T  23721462 ttatagaaatagtttatacataagcactttgatgataagtgtttatg 23721416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 28165081 - 28165023
Alignment:
Q  41 aaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcactta 98  Q
    |||||| ||||||||||||||||| ||||||||||||| |  | |||||||||||||||    
T  28165081 aaaacaatttgacttcattttatcttttgttatagaaagaacttatacataagcactta 28165023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 1417256 - 1417203
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataa 91  Q
    |||||||| |||||||| |||||||| ||||||||| |||||||| ||||||||    
T  1417256 tgaaaacaatttgactttattttatcttttgttatataaatagtttatacataa 1417203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 45078265 - 45078208
Alignment:
Q  58 ttttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    |||||| ||||||||| |||||| | |||||||||||||||||| ||||  |||||||    
T  45078265 ttttatttttgttataaaaatagcttatacataagcacttatatgataaacgtttatg 45078208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 47007013 - 47006972
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataa 106  Q
    ||||||||||||| |||| |||||||||||||||||| ||||    
T  47007013 tttgttatagaaaaagtttatacataagcacttatatgataa 47006972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 941507 - 941451
Alignment:
Q  67 tgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||||||||||| | ||| ||| |||||||||| |||||| |||||| |||||||    
T  941507 tgttatagaaatagcttatatatatgcacttatattataagtttttatgctataagc 941451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 5006587 - 5006639
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacata 90  Q
    ||||||||||||||||| |||||||| |||||||||| ||||| | |||||||    
T  5006587 tgaaaacagtttgactttattttatcttttgttataggaatagcttatacata 5006639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 5276216 - 5276156
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcactta 98  Q
    ||||||| ||||||||| || |||||||| |||||| |||||| | |||||||||||||||    
T  5276216 tgaaaacggtttgactttatgttatcttttgttataaaaatagcttatacataagcactta 5276156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 24973933 - 24973873
Alignment:
Q  42 aaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatat 101  Q
    ||||| ||||| || ||||||||||| ||||||||||||| |  |||||||||||||||||    
T  24973933 aaacaatttgaatttattttatcttttgttatagaaatagcttttacataagcacttatat 24973873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 27492760 - 27492724
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatat 101  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  27492760 tttgttatagaaatagtttatacataagaacttatat 27492724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 34339114 - 34339032
Alignment:
Q  40 gaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataa 121  Q
    ||||||||| |||||| ||||||||||| | |||||||| |||| |||||||||||||||||| ||||||||||||| |||||    
T  34339114 gaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttatgctataa 34339032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 3235464 - 3235546
Alignment:
Q  42 aaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatata--ataagtgtttatgttataag 122  Q
    |||||||||||||| |||||   ||||||||| |||||| |||||||||||||||||||||  ||||||||||||| ||||||    
T  3235464 aaacagtttgactttatttttcatttgttataaaaatagctaatacataagcacttatatatgataagtgtttatgctataag 3235546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 37053586 - 37053515
Alignment:
Q  39 tgaaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataagtg 109  Q
    ||||||||||||||||| ||||||| || |||||||||||||||  |||||||||||||||||| |||||||    
T  37053586 tgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataagtg 37053515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 33197327 - 33197401
Alignment:
Q  49 ttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    ||||||| ||| ||||||| ||||||||||||| | ||| |||||||||||||| ||||| ||||||||||||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatgttataag 33197401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 42974317 - 42974259
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||||||||||||||| ||||| ||||||| |||| ||||||||||||| |||||||    
T  42974317 tttgttatagaaatagtttatacacaagcactaatatgataagtgtttatgctataagc 42974259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 33192185 - 33192108
Alignment:
Q  39 tgaaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||  || |||||||||| | | ||||| |||||||    
T  33192185 tgaaaacagtttgactttattttatcttatgttatagaaatagtttttatataagcacttgtgtgataagagtttatg 33192108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 18962116 - 18962176
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcactta 98  Q
    |||||||||||| |||| ||||||||||| |||||| |||||| |||||||||||||||||    
T  18962116 tgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcactta 18962176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 33267594 - 33267662
Alignment:
Q  39 tgaaaacagtttgacttcatttta-tctttgttatagaaatagttaatacataagcacttatataataa 106  Q
    |||||||||||| |||| |||||| | |||||||||||||||| | |||||||||||||||||| ||||    
T  33267594 tgaaaacagtttaactttattttactgtttgttatagaaatagattatacataagcacttatatgataa 33267662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 10143162 - 10143103
Alignment:
Q  41 aaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttat 99  Q
    ||||||||||||||| ||||||||||| ||||||||||||  | ||||||||||||||||    
T  10143162 aaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcacttat 10143103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 11344362 - 11344468
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcactaagttgtttat 137  Q
    |||||||| ||||||||  |||||||||| ||||||||||||  | || ||||||||||||||||| |||||||  ||  |||| |||| || |||||||    
T  11344362 tgaaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcacttatataacaagtgttattgcaataaacact-agctgtttat 11344460  T
Q  138 ccaaaaag 145  Q
    ||||||||    
T  11344461 ccaaaaag 11344468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 17952779 - 17952850
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtg 109  Q
    |||||| |||||||||| ||||||||||| ||||||||||||| | ||| |||||| ||||||| |||||||    
T  17952779 tgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataagtg 17952850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 32098386 - 32098503
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcact---tatataataagtgtttatgttataagcac-----taag 129  Q
    |||||||| |||||||| |||||||| |||||||||||||||| | ||| ||||||| |   ||||| |||| |||||||| |||||||||     ||||    
T  32098386 tgaaaacactttgactttattttatcttttgttatagaaatagcttatatataagcatttagtatatgataactgtttatgctataagcacttaagtaag 32098485  T
Q  130 ttgtttatccaaaaagag 147  Q
    ||||||||||||| ||||    
T  32098486 ttgtttatccaaatagag 32098503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 13866879 - 13866825
Alignment:
Q  41 aaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagca 94  Q
    ||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||    
T  13866879 aaaacagtttgacttaattttatcttttgctatagaaatagtttatacataagca 13866825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 26857190 - 26857230
Alignment:
Q  41 aaaacagtttgacttcattttatctt-tgttatagaaatag 80  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  26857190 aaaacagtttgacttcattttatcttgtgttatagaaatag 26857230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 29503161 - 29503236
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    |||||| |||||||||| |||||||||| ||||||||||||    |||||||| ||||| ||||||||||| |||||    
T  29503161 tgaaaatagtttgactttattttatctt-gttatagaaatatcatatacataaacacttctataataagtgcttatg 29503236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 35809924 - 35809856
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||||| ||||| || ||||||||||||| || ||||||  | |||||||||||||||||| |||||    
T  35809924 tgaaaacaatttgattttattttatctttgtcatggaaataacttatacataagcacttatatgataag 35809856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 2400126 - 2400071
Alignment:
Q  60 ttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    |||||||||||||||||| |  | |||||||||||||||||| |||| ||||||||    
T  2400126 ttatctttgttatagaaacaacttatacataagcacttatatgataattgtttatg 2400071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 3673799 - 3673736
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatat 101  Q
    |||||||| ||| |||| ||||||| ||| ||||||||||||  ||||||||||||||||||||    
T  3673799 tgaaaacaatttaactttattttatattttgttatagaaataactaatacataagcacttatat 3673736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 14277971 - 14278034
Alignment:
Q  39 tgaaaacagttt-gacttcattttatcttt-gttatagaaatagttaatacataagcacttata 100  Q
    |||||||||||| ||||| |||| || ||| ||||||||||||||| |||||||||||||||||    
T  14277971 tgaaaacagttttgactttatttaatgtttagttatagaaatagtttatacataagcacttata 14278034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 9404553 - 9404515
Alignment:
Q  77 atagttaatacataagcacttatataataagtgtttatg 115  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  9404553 atagtttatacataagcacttatatgataagtgtttatg 9404515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 10190245 - 10190203
Alignment:
Q  64 ctttgttatagaaatagttaatacataagcacttatataataa 106  Q
    |||||||||| |||||||| |||||||||||||||||| ||||    
T  10190245 ctttgttataaaaatagtttatacataagcacttatatgataa 10190203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 15377501 - 15377463
Alignment:
Q  88 ataagcacttatataataagtgtttatgttataagcact 126  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  15377501 ataagcacttatatgataagtgtgtatgttataagcact 15377463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 34054982 - 34055040
Alignment:
Q  42 aaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttat 99  Q
    |||||||||| ||| ||||||||||| |||||||||||||   ||||||||||||||||    
T  34054982 aaacagtttgcctttattttatcttttgttatagaaatagcctatacataagcacttat 34055040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 1493603 - 1493668
Alignment:
Q  51 gacttcattttatct-ttgttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    ||||| ||||||||| |||||||||||| |||| ||| ||||||| |||||| ||||| |||||||    
T  1493603 gactttattttatctattgttatagaaagagtttataaataagcaattatatgataagagtttatg 1493668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 7103563 - 7103627
Alignment:
Q  41 aaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataa 106  Q
    ||||||||||||||| |||||||| |||||||| | ||||||  ||||||||||| ||||| ||||    
T  7103563 aaaacagtttgactttattttatc-ttgttataaatatagtttctacataagcacatatatgataa 7103627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 7283015 - 7282950
Alignment:
Q  34 gcttctgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcactta 98  Q
    |||| ||||||||||||||||||||||| || ||| ||||| |||||| | |||||||| ||||||    
T  7283015 gcttatgaaaacagtttgacttcattttttcttttcttataaaaatagcttatacataaacactta 7282950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 11393760 - 11393817
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||| ||||||||||| | ||||||||||||||| || |||| |||||||| ||||||    
T  11393760 tttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataag 11393817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 11410421 - 11410478
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||| ||||||||||| | ||||||||||||||| || |||| |||||||| ||||||    
T  11410421 tttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataag 11410478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 26522729 - 26522762
Alignment:
Q  65 tttgttatagaaatagttaatacataagcactta 98  Q
    |||||||||||||||||| |||||||||||||||    
T  26522729 tttgttatagaaatagtttatacataagcactta 26522762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 28803584 - 28803653
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||  | ||| |||||||||||||| |||||    
T  28803584 tgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataag 28803653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 35755580 - 35755657
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    |||||||| |||||||| ||||| | |||| |||||||||||| | |||||||| ||||||||  | |||||||||||    
T  35755580 tgaaaacaatttgactttattttctatttgattatagaaatagcttatacataaacacttatacgacaagtgtttatg 35755657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 12215787 - 12215727
Alignment:
Q  51 gacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgt 110  Q
    ||||| ||||||||||| ||| ||||||||||| |||||||||||||  ||| ||||||||    
T  12215787 gactttattttatcttttgttgtagaaatagtttatacataagcactcctattataagtgt 12215727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 13630359 - 13630447
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    ||||||||||||||||| || ||||| |||| || |||||||  | |||||||||||| ||||| | || ||| || ||||||||||||    
T  13630359 tgaaaacagtttgactttatcttatcttttgatagagaaataacttatacataagcacctatatgaaaaatgtgtacgttataagcact 13630447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 33942142 - 33942082
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttat 99  Q
    ||||||||||||||||| |||||||||||    ||||||||| | ||||| ||||||||||    
T  33942142 tgaaaacagtttgactttattttatcttttgattagaaatagctcatacaaaagcacttat 33942082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 37766789 - 37766721
Alignment:
Q  40 gaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||||| |||||||| ||||||| ||| || |||  ||||| |||||||||||||||||||| |||||    
T  37766789 gaaaacattttgactttattttattttttgtcatatgaatagctaatacataagcacttatatgataag 37766721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 38239638 - 38239706
Alignment:
Q  48 tttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    |||||||| ||||||||||| ||||||||||||| | |||||||| |||||| || || |||| |||||    
T  38239638 tttgacttgattttatcttttgttatagaaatagcttatacataaacacttacatgatgagtgcttatg 38239706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 43299483 - 43299535
Alignment:
Q  41 aaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataag 92  Q
    ||||||||||||||| |||||||||| ||||||| |||||| |||| ||||||    
T  43299483 aaaacagtttgactttattttatcttctgttatataaatagctaattcataag 43299535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 14482192 - 14482125
Alignment:
Q  41 aaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||||    
T  14482192 aaaacaatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataag 14482125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 26716525 - 26716596
Alignment:
Q  48 tttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatgttata 120  Q
    |||||||| |||| ||||| ||||||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  26716525 tttgactttatttaatctt-gttatagaagtagcttatacataagcacttatataataagtgtttatgctata 26716596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 8536127 - 8536235
Alignment:
Q  39 tgaaaacagtttgacttca-ttttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcac-----taagttg 132  Q
    |||||||| |||||||||| |||||| |||||||||||||||| | |||||||||||||||||| | |||  || ||| |||||||||     |||||||    
T  8536127 tgaaaacaatttgacttcacttttat-tttgttatagaaatagcttatacataagcacttatatgacaagcattcatggtataagcactcaattaagttg 8536225  T
Q  133 tttatccaaa 142  Q
    ||||||||||    
T  8536226 tttatccaaa 8536235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 39392744 - 39392808
Alignment:
Q  44 acagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||  ||||||||| |||||    
T  39392744 acagtttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataag 39392808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 9912943 - 9912985
Alignment:
Q  72 tagaaatagttaatacataagcacttatataataagtgtttat 114  Q
    ||||||||||| ||||||||| |||||||||||||||||||||    
T  9912943 tagaaatagtttatacataagaacttatataataagtgtttat 9912985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 34563234 - 34563157
Alignment:
Q  47 gtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    ||||||||| |||||||| ||||| |||||||||  | ||| |||||||||||||| |||| |||||||| |||||||    
T  34563234 gtttgactttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataagc 34563157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 29699242 - 29699158
Alignment:
Q  43 aacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    |||| |||||||| ||||||||||| ||||||||||||  |  |||||||||| |||||| |||| | |||||| ||||||||||    
T  29699242 aacattttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctataagcact 29699158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 26813910 - 26813953
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagt 108  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  26813910 tttgttatagaaataatttatacataagcacttatatgataagt 26813953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 41001229 - 41001296
Alignment:
Q  34 gcttctgaaaacagtttgacttcattttatct-ttgttatagaaatagttaatacataagcacttata 100  Q
    |||| |||||||||| ||||||||||| |||| ||||||||||||||| | | | |||||||||||||    
T  41001229 gcttatgaaaacagtctgacttcatttaatctcttgttatagaaatagcttacagataagcacttata 41001296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 35534941 - 35535007
Alignment:
Q  41 aaaacagtttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatataataa 106  Q
    ||||||||||||||| |||||| ||||  |||||||||||| | ||| |||||||||||||| ||||    
T  35534941 aaaacagtttgactttattttaacttttattatagaaatagcttatatataagcacttatatgataa 35535007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 42597393 - 42597331
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttata 100  Q
    |||||||| ||| |||| ||||||||||| ||||||||||||| | ||||||||| |||||||    
T  42597393 tgaaaacaattttactttattttatcttttgttatagaaatagcttatacataagtacttata 42597331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 4558790 - 4558705
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||| | ||| |||| |||||||||||  |||||||||||| | |||||||| |||||| |||||||  ||||||| |||||||    
T  4558790 tgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacacttacataataaacgtttatgctataagc 4558705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 12972848 - 12972763
Alignment:
Q  39 tgaaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    ||||| |||||| | || |||| ||||| |||||| ||||||| | |||||||||||||||||| |||| || ||||| |||||||    
T  12972848 tgaaaccagtttaattttatttcatcttctgttattgaaatagcttatacataagcacttatatgataaatgcttatgctataagc 12972763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 13561390 - 13561475
Alignment:
Q  39 tgaaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||||| |||||||| |||| || || |||||||||||||| | || |||| | |||| ||| || ||||||||||||||||||    
T  13561390 tgaaaacaatttgactttatttaattttctgttatagaaatagcttattcatatgtacttttatgatgagtgtttatgttataagc 13561475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 30013207 - 30013139
Alignment:
Q  42 aaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgt 110  Q
    |||||||||||||| |||| | |||| |||||| |||||| | | |||||||||||||||||||||||||    
T  30013207 aaacagtttgacttaatttgaccttttgttata-aaatagcttaaacataagcacttatataataagtgt 30013139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 42508672 - 42508729
Alignment:
Q  69 ttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    ||||||||||||  ||||||||| | ||||||| |||| ||||||||||| |||||||    
T  42508672 ttatagaaatagccaatacataaacccttatatgataaatgtttatgttagaagcact 42508729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 5290628 - 5290574
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcactt 97  Q
    ||||||||||||||||  |||||||  ||||||||||||||| | ||||||||||||||    
T  5290628 tgaaaacagtttgact--attttat--ttgttatagaaatagcttatacataagcactt 5290574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 26215487 - 26215427
Alignment:
Q  40 gaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttat 99  Q
    ||||| ||||| |||| ||||||||||| ||||||||||||| | |||||||||| |||||    
T  26215487 gaaaatagtttaactttattttatcttttgttatagaaatagcttatacataagcgcttat 26215427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 28769418 - 28769486
Alignment:
Q  40 gaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||| |||||||||| |||||||  |||||||||| ||||| | ||||||||||| |||||| |||||    
T  28769418 gaaaatagtttgacttaattttatagtttgttataggaatagcttatacataagcatttatatgataag 28769486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 34770884 - 34770824
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcactta 98  Q
    |||||||| |||||||| |||||||| ||||| || |||||||||  ||||||||||||||    
T  34770884 tgaaaacaatttgactttattttatcttttgtaatggaaatagtttttacataagcactta 34770824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 35298556 - 35298624
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataa 106  Q
    ||||||| ||||| ||| ||||||||||| ||||  ||||||| | |||||||||||||||||| ||||    
T  35298556 tgaaaactgtttggctttattttatcttttgttactgaaatagcttatacataagcacttatatgataa 35298624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 38036192 - 38036272
Alignment:
Q  41 aaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttata 120  Q
    |||||| ||||| || ||||||| ||| |||| | |||||||| ||||||||||||||||| |||||| | ||||| ||||    
T  38036192 aaaacaatttgaatttattttattttttgttaaataaatagtttatacataagcacttatagaataagcgcttatgctata 38036272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 43368778 - 43368838
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcactta 98  Q
    ||||||| ||||||||||||||||| |||  |||| ||||||| | |||||||||||||||    
T  43368778 tgaaaactgtttgacttcattttatttttatttatcgaaataggtcatacataagcactta 43368838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 9027567 - 9027484
Alignment:
Q  41 aaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    ||||||||||||||| |||||||||| | || ||||||||| | ||| |||||||||||||||||||||||| ||| |||||||    
T  9027567 aaaacagtttgactttattttatcttctattgtagaaatagcttatagataagcacttatataataagtgttcatgctataagc 9027484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 2456943 - 2456884
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcactta 98  Q
    ||||| ||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  2456943 tgaaagcagcttgactttattttatctttgttatcgaaatagtttatacataagcactta 2456884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 29269886 - 29269808
Alignment:
Q  41 aaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataagtgtttatgttat 119  Q
    |||||| |||||||| |||||||||| |||||||||||||||| ||||| ||||| |||||| ||||| |||||||||||    
T  29269886 aaaacaatttgactttattttatcttctgttatagaaatagtttatacacaagcatttatatgataag-gtttatgttat 29269808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 31461643 - 31461582
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    |||||||||||||||| | ||||||||||||||||| |||||||| ||||  ||||||||||    
T  31461643 tttgttatagaaatagcttatacataagcacttatacaataagtgcttataatataagcact 31461582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 1497973 - 1497887
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt--gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    ||||||||||||||||| |||||| ||||  |||| | |||||| | | ||||||||||||| || ||||||||||||| |||||||    
T  1497973 tgaaaacagtttgactttattttaccttttggttaaaaaaatagcttaaacataagcacttaaatgataagtgtttatgctataagc 1497887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 7714017 - 7713930
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcac 125  Q
    |||||||| |||||||| |||||||| ||||||||  || ||||| |||||||||| ||||||| ||| ||| ||||| |||||||||    
T  7714017 tgaaaacaatttgactttattttatcttttgttatgaaagtagtttatacataagctcttatatgataggtggttatgctataagcac 7713930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 24774748 - 24774681
Alignment:
Q  41 aaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||||||||| || |||||    
T  24774748 aaaacagtttgactttattttatattttgttatagaaatagtttatatataagcacttacatgataag 24774681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 3169323 - 3169397
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgttt 112  Q
    ||||||||||| || || |||| |||||| ||||||||||||| | | |||||||||||||||| ||||||||||    
T  3169323 tgaaaacagttcgaatttatttcatcttttgttatagaaataggttacacataagcacttatatgataagtgttt 3169397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 9732468 - 9732382
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagca 124  Q
    |||||||| |||||||| |||||||| |||  ||||||||||| | || |||||||||||||||  ||| |||||||| ||||||||    
T  9732468 tgaaaacaatttgacttaattttatcctttaatatagaaatagcttatgcataagcacttatatggtaaatgtttatgctataagca 9732382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 31564767 - 31564840
Alignment:
Q  40 gaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgtttat 114  Q
    ||||||||| ||||||||||||||| |||||||| |||||| | ||||||| ||| || ||| ||||||||||||    
T  31564767 gaaaacagtgtgacttcattttatc-ttgttataaaaatagcttatacatatgcaattttatgataagtgtttat 31564840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 33259807 - 33259745
Alignment:
Q  40 gaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatat 101  Q
    ||||||||| |||||||| ||||||||| |||||| |||||| | ||||||||||||||||||    
T  33259807 gaaaacagtatgacttcaatttatcttttgttataaaaatagcttatacataagcacttatat 33259745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 2514687 - 2514610
Alignment:
Q  46 agtttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||||||||| |||||||||||  |||||||||||| | ||||||||||||||| || |||||  |||||| ||||||    
T  2514687 agtttgactttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttatgctataag 2514610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 31668790 - 31668847
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||||||||||||||| | |||||||||||||||||| |||| || ||||| ||||||    
T  31668790 tttgttatagaaatagcttatacataagcacttatatgataattgcttatgctataag 31668847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 7351686 - 7351769
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataa 121  Q
    |||||||||||| |||| |||||||  ||| ||||| |||||||| ||||||||||| |||||| ||||| | ||||| |||||    
T  7351686 tgaaaacagtttaactttattttatagtttattatataaatagtttatacataagcatttatatgataagagcttatgctataa 7351769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 10616994 - 10617033
Alignment:
Q  43 aacagtttgacttcattttatctttgttatagaaatagtt 82  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  10616994 aacaatttaacttcattttatctttgttatagaaatagtt 10617033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 13360727 - 13360641
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcac 125  Q
    ||||||| | ||||||| ||||||| ||| |||||||||||||||   |||||||||||||||| ||||| | ||| |||||||||||    
T  13360727 tgaaaactgcttgactttattttatattttgttatagaaatagtttgcacataagcacttatatgataagcgctta-gttataagcac 13360641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 14340931 - 14340990
Alignment:
Q  88 ataagcacttatataataagtgtttatgttataagcac-----taagttgtttatccaaa 142  Q
    |||| ||||||||| |||||||||||||||||||||||     |||||||||||||||||    
T  14340931 ataaacacttatatgataagtgtttatgttataagcacttaattaagttgtttatccaaa 14340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 31583698 - 31583651
Alignment:
Q  34 gcttctgaaaacagtttgacttcattttatct-ttgttatagaaatag 80  Q
    |||| |||||||| |||||||||||||||||| |||||||||||||||    
T  31583698 gcttatgaaaacaatttgacttcattttatctcttgttatagaaatag 31583651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 7148640 - 7148590
Alignment:
Q  58 ttttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||||||| ||| ||||||||| | ||||||||||||||||||||||||    
T  7148640 ttttatctttagttgtagaaatagcttatacataagcacttatataataag 7148590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 24836278 - 24836344
Alignment:
Q  40 gaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataata 105  Q
    ||||||| |||||||| ||||||||||| ||||||||||||  | ||||||||  ||||||||||||    
T  24836278 gaaaacaatttgactttattttatcttttgttatagaaataacttatacataaatacttatataata 24836344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 29249439 - 29249397
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||||||||||||| | |||||||||||||||||| |||||    
T  29249439 tttgttatagaaatagctgatacataagcacttatatgataag 29249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 31337986 - 31337932
Alignment:
Q  67 tgttatagaaatagttaatacataagcacttatataataagtgtttatgttataa 121  Q
    |||||||||||||||| ||||||||| ||||||| |||||| | ||||| |||||    
T  31337986 tgttatagaaatagtttatacataagtacttatacaataagcgcttatgctataa 31337932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 5884947 - 5885020
Alignment:
Q  50 tgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||||||||||||| ||| |||||||||||| || ||||||| |||||||||| |||  ||||| || ||||||    
T  5884947 tgacttcattttattttttgttatagaaataatttatacatatgcacttatatgatacatgtttgtgctataag 5885020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 8010338 - 8010281
Alignment:
Q  49 ttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataa 106  Q
    ||||||| |||||||  ||||||||||||||| | |||| ||||||||||||| ||||    
T  8010338 ttgactttattttattgttgttatagaaatagcttatacctaagcacttatatgataa 8010281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 29274307 - 29274376
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||||| |||||||| |||||||| |||| ||||||||||| | ||||||||||| || ||| |||||    
T  29274307 tgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 31672541 - 31672614
Alignment:
Q  34 gcttctgaaaacagtttgacttcatttta-tctttgttatagaaatagttaatacataagcacttatataataa 106  Q
    |||| ||||||||||||||||| |||||| | ||||| || ||||||||| |||||||| ||||| ||| ||||    
T  31672541 gcttatgaaaacagtttgactttattttattttttgtcatggaaatagtttatacataaacacttgtatgataa 31672614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 33068639 - 33068727
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    ||||||||||||||  | ||||||||||| ||||||||||||  | ||||||||||| |||| | ||||| | ||||| ||||| ||||    
T  33068639 tgaaaacagtttgatattattttatcttttgttatagaaataacttatacataagcatttatttgataagcgcttatgctataaacact 33068727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 34633206 - 34633246
Alignment:
Q  41 aaaacagtttgacttcattttatctt-tgttatagaaatag 80  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  34633206 aaaacagtttgacttcattttatcttgttttatagaaatag 34633246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 29588845 - 29588787
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||||||||||||| | |||||||||||||||||||| ||||||||||| |||||||    
T  29588845 tttgttatagaaatagcttatacataagcacttatataaaaagtgtttatgctataagc 29588787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 20982213 - 20982322
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact-----aagttg 132  Q
    ||||||| | ||||||| |||||||| |||||||||||||||| | |||||||||||||||||| |||||   ||||| ||||||||||     ||||||    
T  20982213 tgaaaacgggttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaagttg 20982312  T
Q  133 tttatccaaa 142  Q
    ||||||||||    
T  20982313 tttatccaaa 20982322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 19177471 - 19177403
Alignment:
Q  39 tgaaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataa 106  Q
    ||||||||||| ||||| |||||||||| |||| ||||||||||| |||||||||||||||||| ||||    
T  19177471 tgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagcacttatatgataa 19177403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 32059667 - 32059743
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    ||||||||||||||||| |||||||||| |||| | ||| || | |||||||||||||||||| |||||| ||||||    
T  32059667 tgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttatg 32059743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 37063152 - 37063236
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||| | |||  |||||| ||||||    
T  37063152 tgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagcatttatgctataag 37063236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 28586844 - 28586925
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttat 119  Q
    ||||||||||||||||| |||||||| |||||||||||||||||  |||||||| ||| ||||| |||   |||||||||||    
T  28586844 tgaaaacagtttgactttattttatcttttgttatagaaatagtgtatacataaccacatatatgatagtcgtttatgttat 28586925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 35095864 - 35095930
Alignment:
Q  42 aaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||| |||||||| ||||||||||| ||||||||||||||| | | |||||||||||||| |||||    
T  35095864 aaacaatttgactttattttatcttttgttatagaaatagtttaaatataagcacttatatgataag 35095930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 11095557 - 11095622
Alignment:
Q  49 ttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatataataagtgttta 113  Q
    ||||||| ||| |||| |||||||||||||||||| |||||||| |||||||||  ||||||||||    
T  11095557 ttgactttattgtatcatttgttatagaaatagtttatacataatcacttatatggtaagtgttta 11095622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 7096200 - 7096264
Alignment:
Q  34 gcttctgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcactt 97  Q
    |||| ||||||  ||||||||| ||||||||||| ||||||||||||| | ||||||||||||||    
T  7096200 gcttatgaaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcactt 7096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 14295498 - 14295450
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaata 86  Q
    ||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  14295498 tgaaaacagtttgactttattttatcttttgttatagaaatagctaata 14295450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 14961904 - 14961852
Alignment:
Q  70 tatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    ||||||||||| | |||||||||| |||||| |||||||||||||| ||||||    
T  14961904 tatagaaatagctcatacataagcgcttataaaataagtgtttatgctataag 14961852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 25079655 - 25079707
Alignment:
Q  70 tatagaaatagtta-atacataagcacttatataataagtgtttatgttataa 121  Q
    |||||||||||||  ||| ||||||||||||||||||||||||| ||||||||    
T  25079655 tatagaaatagttttatatataagcacttatataataagtgtttttgttataa 25079707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 25137624 - 25137676
Alignment:
Q  70 tatagaaatagtta-atacataagcacttatataataagtgtttatgttataa 121  Q
    |||||||||||||  ||| ||||||||||||||||||||||||| ||||||||    
T  25137624 tatagaaatagttttatatataagcacttatataataagtgtttttgttataa 25137676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 6738485 - 6738568
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatataataagtgtttatgttataa 121  Q
    |||||| | |||||||| ||||| |||||  |||| ||||||| | ||||||||| |||||||| ||||||||||||| |||||    
T  6738485 tgaaaagaatttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgataagtgtttatgctataa 6738568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 10391327 - 10391268
Alignment:
Q  57 attttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatg 115  Q
    ||||||||||| |||||| |||||| | |||| ||||||||||||| |||||||||||||    
T  10391327 attttatcttttgttataaaaatagcttatacgtaagcacttatatgataagtgtttatg 10391268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 26516272 - 26516205
Alignment:
Q  57 attttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    ||||||||||| ||| ||||||||| | |||||||||||||||||| ||||| | ||||| |||||||    
T  26516272 attttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagc 26516205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 27106014 - 27106089
Alignment:
Q  52 acttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    |||| ||||||||||| |||||||||||   | |||| |||||||||||| |||||||||||||| | ||||||||    
T  27106014 actttattttatcttttgttatagaaatgacttatacgtaagcacttatacaataagtgtttatgctgtaagcact 27106089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 32172635 - 32172576
Alignment:
Q  49 ttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||| ||| ||| |||||    
T  32172635 ttgacttcattttatcttttgttgtagaaatagtttatacataagctcttgtatgataag 32172576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 33234351 - 33234292
Alignment:
Q  41 aaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttata 100  Q
    ||||||||||||||||||||||| |||||  ||||||||  | ||||| |||||||||||    
T  33234351 aaaacagtttgacttcattttatatttgtcgtagaaataacttatacacaagcacttata 33234292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 35135740 - 35135803
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttatat 101  Q
    |||||| |||||||||| |||||||| |||||||||||||||  | |||||||| |||||||||    
T  35135740 tgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttatat 35135803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 29115318 - 29115376
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||| ||||||||| | |||||||||||||| ||| |||| |||||||| |||||||    
T  29115318 tttgttgtagaaatagcttatacataagcacttttatgataaatgtttatgctataagc 29115376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 36646231 - 36646169
Alignment:
Q  40 gaaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatat 101  Q
    |||||||||||||||| | |||||||| ||||||| |||||||| || |||||||| ||||||    
T  36646231 gaaaacagtttgactttagtttatcttatgttataaaaatagtttatgcataagcatttatat 36646169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 11835268 - 11835187
Alignment:
Q  40 gaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcacttat-ataataagtgtttatgttat 119  Q
    ||||||| ||| |||| |||||||| ||||||||| |||| ||| |||||||| ||||||| || ||||| |||||||||||    
T  11835268 gaaaacaatttaactttattttatcttttgttataaaaatggtttatacataaacacttatcatgataagcgtttatgttat 11835187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 10303793 - 10303749
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagtt 82  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||    
T  10303793 tgaaaacaatttgactttattttatcttttgttatagaaatagtt 10303749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 29117009 - 29117049
Alignment:
Q  40 gaaaacagtttgacttcattttatc-tttgttatagaaata 79  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  29117009 gaaaacagtttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 6715 - 6791
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttat 114  Q
    |||||||| |||||||| | ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  6715 tgaaaacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttat 6791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 116634 - 116710
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttat 114  Q
    |||||||| |||||||| | ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  116634 tgaaaacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttat 116710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 1159 - 1236
Alignment:
Q  46 agtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||| |||   ||||||| ||||||    
T  1159 agtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataag 1236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 2816 - 2739
Alignment:
Q  46 agtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    |||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||| |||   ||||||| ||||||    
T  2816 agtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataag 2739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 27568 - 27483
Alignment:
Q  39 tgaaaacagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||||| |||||||| |||||||||| |||||||||||||  | ||||||||||||||| || ||||| | ||||| |||||||    
T  27568 tgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagcttatgctataagc 27483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 45107614 - 45107533
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgtttatgttata 120  Q
    |||||| |||||||||| ||||||| ||| |||||||||||| | ||| |||||||||||||| |||  |||||||| ||||    
T  45107614 tgaaaatagtttgactttattttatttttcttatagaaatagcttatagataagcacttatatgatagatgtttatgctata 45107533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 871027 - 870968
Alignment:
Q  49 ttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||||| ||||||||||| |||||| |||||||| |||||||||||||||||| |||||    
T  871027 ttgacttaattttatcttttgttataaaaatagtttatacataagcacttatatgataag 870968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 15360886 - 15360827
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaatagttaatacataagcactt 97  Q
    ||||||||||||||||| |||||||| |||||||||||||||  |||||||||| |||||    
T  15360886 tgaaaacagtttgactttattttatcttttgttatagaaataactaatacataaacactt 15360827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 23373363 - 23373437
Alignment:
Q  34 gcttctgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    |||| ||||||||| ||||||| ||||||||||| | ||||||||||| |||||| |||||| |||||| |||||    
T  23373363 gcttatgaaaacagattgactttattttatcttttgatatagaaatagctaatacgtaagcagttatatgataag 23373437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 30259571 - 30259649
Alignment:
Q  45 cagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    ||||||||||| ||||||| ||| ||||||||||||| |  | ||||||||||| ||| |||||||| |||||||||||    
T  30259571 cagtttgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgataagtgtgtatgttataag 30259649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 4363710 - 4363794
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    ||||||||||||||| | |||| |||||| |||||| ||||||   |||||||||||||||||| | ||||||||||| |||||||    
T  4363710 tgaaaacagtttgacattatttaatcttttgttata-aaatagagtatacataagcacttatatgacaagtgtttatgctataagc 4363794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 6659684 - 6659627
Alignment:
Q  50 tgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataa 106  Q
    |||| ||||||||||||| | ||||||||||||| |||||||||||||||||| ||||    
T  6659684 tgacgtcattttatcttttgctatagaaatagtttatacataagcacttatatgataa 6659627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 12519048 - 12519141
Alignment:
Q  39 tgaaaacagtttgacttcattttat-ctttgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcactaagtt 131  Q
    |||||||| |||||||| ||||||| | ||||||||||| ||| | ||||||| |  ||||||||||| ||||||||| ||||| |||| ||||    
T  12519048 tgaaaacaatttgactttattttatacattgttatagaagtagattatacataggtgcttatataataggtgtttatgctataaacacttagtt 12519141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 12763100 - 12763028
Alignment:
Q  41 aaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgtttat 114  Q
    ||||||||||||||  |||||||||| || ||||||||| || ||| |||||||| ||||| ||||||||||||    
T  12763100 aaaacagtttgactatattttatctt-gtcatagaaatactttatagataagcacatatatgataagtgtttat 12763028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 18434562 - 18434619
Alignment:
Q  45 cagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatat 101  Q
    ||||||||||| ||||||||||| ||||| ||||||| ||||||| ||||||||||||    
T  18434562 cagtttgactttattttatcttttgttatggaaataggtaatacagaagcacttatat 18434619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 24502913 - 24502954
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttgttatagaaatag 80  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  24502913 tgaaaacagtttgactatattttatctttgttatagaaatag 24502954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 40357964 - 40358033
Alignment:
Q  39 tgaaaacagtttgacttcattttatct-ttgttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||||| |||||||| ||||||||  ||||||||||||||| | |||||||  |||||||||||||||    
T  40357964 tgaaaacaatttgactttattttatccattgttatagaaatagcttatacatagtcacttatataataag 40358033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 35689706 - 35689626
Alignment:
Q  44 acagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||| |||||||||||| | |||| || |||||||||  | ||||||||| |||||| | |||||||||||||||||||||    
T  35689706 acagcttgacttcatttcagcttttgtgatagaaatatctcatacataagtacttatttgataagtgtttatgttataagc 35689626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 37818455 - 37818395
Alignment:
Q  40 gaaaacagtttgacttcattttatct-ttgttatagaaatagttaatacataagcacttat 99  Q
    ||||| ||||||||||| |||||||| ||||||||||||||  | ||||||||||||||||    
T  37818455 gaaaatagtttgacttcgttttatctcttgttatagaaataacttatacataagcacttat 37818395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 41638214 - 41638178
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatat 101  Q
    |||||||||||||||| ||||||||||||||||||||    
T  41638214 tttgttatagaaatagctaatacataagcacttatat 41638178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 24857621 - 24857680
Alignment:
Q  67 tgttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    |||||||||||||||| |||||||| ||||||||| || |||| ||||| || |||||||    
T  24857621 tgttatagaaatagtttatacataaacacttatatgattagtgcttatgatacaagcact 24857680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 37175949 - 37176032
Alignment:
Q  40 gaaaacagtttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatataataagtgtttatgttataag 122  Q
    ||||| |||||||||| |||||| ||||| |||||||||||||| ||| |||| ||||||    ||||| ||||||||||||||    
T  37175949 gaaaatagtttgactttattttacctttggttatagaaatagtttatatataatcacttactgtataagcgtttatgttataag 37176032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 49557120 - 49557045
Alignment:
Q  52 acttcattttatcttt-gttatagaaatagttaatacataagcacttatataataagtgtttatgttataagcact 126  Q
    |||| ||||||||||| ||||||||||||  | |||||  ||||||||||| ||||||| ||| ||||||||||||    
T  49557120 actttattttatcttttgttatagaaataacttatacagcagcacttatatgataagtgattacgttataagcact 49557045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 26179482 - 26179416
Alignment:
Q  41 aaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||| ||| ||||  |||| ||||| || ||||||||||| |||||||||||||||||| |||||    
T  26179482 aaaacaattttacttttttttttctttcttctagaaatagtttatacataagcacttatattataag 26179416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 48282125 - 48282056
Alignment:
Q  40 gaaaacagtttgacttcattttatctttgtt--atagaaatagttaatacataagcacttatataataag 107  Q
    ||||| |||||||||| ||||||||||| ||  |||||||||| |  ||||||||||||||||| |||||    
T  48282125 gaaaatagtttgactttattttatctttcttttatagaaatagcttttacataagcacttatatgataag 48282056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 608343 - 608428
Alignment:
Q  39 tgaaaacagtttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatataataagtgtttatgttataagc 123  Q
    |||||||||||| |||| |||| ||||||| || ||||||||| | ||||||||| || ||| | |||| | ||||||||||||||    
T  608343 tgaaaacagtttaactttatttcatctttgcttttagaaatagcttatacataagtacctatgtgataaatatttatgttataagc 608428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 4276714 - 4276799
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacat-aagcacttatataataagtgtttatgttataag 122  Q
    |||||||||| |||||| || |||||||| ||||||||||||||| |||| | || || |||||| ||||||| ||||| ||||||    
T  4276714 tgaaaacagtatgactttatattatcttttgttatagaaatagtttatacttaaaacatttatatgataagtgattatgctataag 4276799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 15709859 - 15709818
Alignment:
Q  39 tgaaaacagtttgacttcattttatc-tttgttatagaaata 79  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  15709859 tgaaaacagtttgacttaattttatcatttgttatagaaata 15709818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 23895324 - 23895259
Alignment:
Q  43 aacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatataataag 107  Q
    |||||||||| || ||||||||||| ||||||||||||| | ||||||||  |||||||| |||||    
T  23895324 aacagtttgaatttattttatcttttgttatagaaatagcttatacataataacttatatgataag 23895259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 43029482 - 43029543
Alignment:
Q  42 aaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatata 102  Q
    ||||||||||| || ||||||||||| ||| ||||||||| | ||||||||||||| |||||    
T  43029482 aaacagtttgaatttattttatcttttgttgtagaaataggttatacataagcactcatata 43029543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 45999366 - 45999427
Alignment:
Q  39 tgaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttat 99  Q
    ||||| ||||||||||| || |||||||| ||||||||||||| | |||||| |||||||||    
T  45999366 tgaaagcagtttgactttatcttatcttttgttatagaaatagcttatacatgagcacttat 45999427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 46499934 - 46499995
Alignment:
Q  41 aaaacagtttgacttcattttatctttg-ttatagaaatagttaatacataagcacttatat 101  Q
    |||||| |||||||| |||||||||||  |||||||||||| | ||| ||||||||||||||    
T  46499934 aaaacaatttgactttattttatcttttcttatagaaatagcttatagataagcacttatat 46499995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 4548711 - 4548648
Alignment:
Q  41 aaaacagtttgacttcattttatc--tttgttatagaaatagttaatacataagcacttatata 102  Q
    ||||||||||||||| ||||||||  ||||||| | |||||||  |||||| ||||||||||||    
T  4548711 aaaacagtttgactttattttatctttttgttacaaaaatagtctatacatgagcacttatata 4548648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 13037829 - 13037793
Alignment:
Q  65 tttgttatagaaatagttaatacataagcacttatat 101  Q
    |||||||||||||||| | ||||||||||||||||||    
T  13037829 tttgttatagaaatagcttatacataagcacttatat 13037793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 46712362 - 46712290
Alignment:
Q  41 aaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataagtgttta 113  Q
    |||||| ||||| ||||||| || || ||||||||||||| | |||| ||||||||| | | |||||||||||    
T  46712362 aaaacaatttgaattcatttgattttagttatagaaatagcttatacctaagcacttgtgtgataagtgttta 46712290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 48748656 - 48748728
Alignment:
Q  34 gcttctgaaaacagtttgacttcattttatctttgttatagaaatagttaatacataagcacttatataataa 106  Q
    |||| |||||||| ||| |||| |||| ||||||  ||||||||||| | |||||||||||| ||||| ||||    
T  48748656 gcttatgaaaacaatttaactttatttcatcttttgtatagaaatagcttatacataagcacatatatgataa 48748728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 20163 - 20111
Alignment:
Q  47 gtttgacttcattttatctttg-ttatagaaatagttaatacataagcactta 98  Q
    ||||||||| |||||||||||| |||||||||||||  |||||||||||||||    
T  20163 gtttgactttattttatctttggttatagaaatagtatatacataagcactta 20111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 143145 - 143208
Alignment:
Q  45 cagtttgacttcattttatctt-tgttatagaaatagttaatacataagcacttatataataag 107  Q
    ||||||||| | |||||||||| |||||||||||||| |||| ||||||| ||||||| |||||    
T  143145 cagtttgacattattttatcttgtgttatagaaatagctaattcataagcgcttatatgataag 143208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 3895 - 3833
Alignment:
Q  40 gaaaacagtttgacttcattttatcttt-gttatagaaatagttaatacataagcacttatat 101  Q
    ||||||||| |||||||| ||||||||| |||||| |||||| | | ||||||||||||||||    
T  3895 gaaaacagtatgacttcagtttatcttttgttataaaaatagcttacacataagcacttatat 3833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University