View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3115_low_5 (Length: 636)
Name: NF3115_low_5
Description: NF3115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3115_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 7 - 620
Target Start/End: Original strand, 40556590 - 40557203
Alignment:
| Q |
7 |
gaatcatgaggacgttgtttgtggatgcaatgaaggttttgacaaaataataaccaagnnnnnnngaaggaaccaatcagcgacaagagattttagcagt |
106 |
Q |
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| T |
40556590 |
gaatcatgaggatgttgtttgtggatgcaatgaaggttttgacaaaataataaccaagaaaaaaagaaggaaccaatcagcgacaagagattttagcatt |
40556689 |
T |
|
| Q |
107 |
cttaaatatggtatgcttgaatcaaagaatcgcggggttgctgattgtagacgcgatgagggtgttgggaaaaaacttatcaagacaagaagaagtgatg |
206 |
Q |
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| T |
40556690 |
cttaaatatggtatgcttgaatcaaagaatcgcggggttactgattgtagacgcgatgagggtgttgggaaaaaacttatcaagacaagaagaagtgatg |
40556789 |
T |
|
| Q |
207 |
gaccacgggtgagaattgcttttggcaatcctgatacaaagaataatgagggagctcatgagggatcttcatccaatgaaggttccaaaaaggagatcaa |
306 |
Q |
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| T |
40556790 |
gaccacgggtgagaattgcttttggcaatcctgatacaaagaataatgagggagctcatgagggatcttcatccaatgaaggttccaaaaaggagatcaa |
40556889 |
T |
|
| Q |
307 |
gaaaagaaaagacaagaatgaacgatcaagcaaaccgtcaaagaaacgcaagaaccaggtgcaagaagagaaaccggagcttccattggtgtttaaagaa |
406 |
Q |
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| T |
40556890 |
gaaaagaaaagacaagaatgaacgatcaagcaaaccgtcaaagaaacgcaagaaccaggtgcaagaagagaaaccggagcttccattggcgtttaaagaa |
40556989 |
T |
|
| Q |
407 |
aagatggaacaaatgggaggttgtgaggtgaagttggtgatccagaaggaactgacaatgagtgacgtggacaaagatcaaagccgcttgtccattccaa |
506 |
Q |
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| T |
40556990 |
aagattgaacaaatggaaggttgtgaggtgaagttggtgatccagaaggaactgacaatgagtgacgtggacaaagatcaaagccgcttgtccattccaa |
40557089 |
T |
|
| Q |
507 |
taggtaagattgaagagaactttctgacaccaacagaggaattgtctttggattatgtgcctcaaaagaaaaaagggaggaagaagatcgtcggtatgca |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
40557090 |
taggtaagattgaagagaactttctgacaccaacagaggaattgtctttggattatgtgcctcaaaataaaaaagggaggaagaagattgttggtatgcc |
40557189 |
T |
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| Q |
607 |
cgtgtccgtgttgg |
620 |
Q |
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| T |
40557190 |
cgtgttcgtgttgg |
40557203 |
T |
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